Gene Expression Omnibus (GEO) Overview Version：2013-04-06Japanese page
An overview of the GEO entries broken down by the measurement platforms and the features of the measured samples.
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Data Unit : [ DataSet / Sample / Platform ] Show explanation>> <<Hide explanation
DataSet : Series(GSE) x Platform(GPL). A set of related gene expression data.
Sample : Biological materials.
platform : Methods or instruments used for the gene expression profilings.
The numbers shown in the tabs are the numbers of the data (series, samples or platforms) belonging to the groups.
  Human
(502,421)		   Primates
(4,928)		   Rodents
(181,106)		   Mammals
(16,260)		   Vertebrates
(18,263)		   Invertebrates
(37,338)		   Plants
(91,454)		   Bacteria
(39,082)		   Viruses
(1,266)		   Phages
(101)		   Unclassified
(5,242)		   All
(898,944)		  
  SAGE NlaIII
(0)		   SAGE RsaI
(0)		   SAGE Sau3A
(0)		   MPSS
(0)		   GeneChip
(0)		   Tiling Array
(40)		   cDNA Array
(102)		   Oligo Array
(1,057)		   Bead Array
(0)		   Protein Array
(0)		   Antibody
(0)		   RT-PCR
(0)		   HT-Seq
(67)		   Other
(0)		   All
(1,266)		  
  brain
(12)		   blood
(274)		   connective
(420)		   reproductive
(0)		   muscular
(0)		   digestive
(1)		   liver
(0)		   lung
(28)		   urinary
(0)		   endo/exo-crine
(0)		   embryo
(0)		   adult aerial structure
(0)		   young aerial structure
(0)		   root
(0)		   meristem/growing tissue
(0)		   flower/sexual organ
(0)		   seed/fruit/grain
(0)		   pooled
(1)		   unclassified
(530)		   all
(1,266)		  
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Sample ID Title Number of Data Institute Submission date Platform Sample type Species Organ class Reasoning of the classification
Keywords used for the classification are shown with bold font.
1 GSM324087 Col-0 (TMV-Cg, 3dpi) 13,312 texas tech university 2008-09-24 [HT Sequencing] Illumina Genome Analyzer II (Youcai mosaic virus) (GPL9403) SRA Youcai mosaic virus
Youcai mosaic virus		 unclassified source_name:TMV-Cg infected Arabidopsis thaliana Col-0 host. title:Col-0 (TMV-Cg, 3dpi) description:The processed data below represent the sequence and normalized abundance of virus-derived small RNAs For the ease of retrieving the small RNA data, we organized the processed small RNAs captured from TMV-Cg-infected Col-0 tissues into multiple files, each containing a distinct size class ranging from 18- to 25-nt. _18nt.txt file is small RNAs of 18-nt in size _19nt.txt file is small RNAs of 19-nt in size _20nt.txt file is small RNAs of 20-nt in size _21nt.txt file is small RNAs of 21-nt in size _22nt.txt file is small RNAs of 22-nt in size _23nt.txt file is small RNAs of 23-nt in size _24nt.txt file is small RNAs of 24-nt in size _25nt.txt file is small RNAs of 25-nt in size Host genetic background: Wild type; Viral pathogen: TMV-Cg
2 GSM324089 rdr6-15 (TMV-Cg, 3dpi) 10,988 texas tech university 2008-09-24 [HT Sequencing] Illumina Genome Analyzer II (Youcai mosaic virus) (GPL9403) SRA Youcai mosaic virus
Youcai mosaic virus		 unclassified source_name:TMV-Cg infected Arabidopsis thaliana rdr6-15 host. title:rdr6-15 (TMV-Cg, 3dpi) description:The processed data below represent the sequence and normalized abundance of virus-derived small RNAs For the ease of retrieving the small RNA data, we organized the processed small RNAs captured from TMV-Cg-infected rdr6-15 tissues into multiple files, each containing a distinct size class ranging from 18- to 25-nt. _18nt.txt file is small RNAs of 18-nt in size _19nt.txt file is small RNAs of 19-nt in size _20nt.txt file is small RNAs of 20-nt in size _21nt.txt file is small RNAs of 21-nt in size _22nt.txt file is small RNAs of 22-nt in size _23nt.txt file is small RNAs of 23-nt in size _24nt.txt file is small RNAs of 24-nt in size _25nt.txt file is small RNAs of 25-nt in size Host genetic background: rdr6-15; Viral pathogen: TMV-Cg
3 GSM304467 TuMV_1st454 7,656 CEH Oxford 2008-07-09 [HT Sequencing] 454 GS (Turnip mosaic virus) (GPL9383) SRA Turnip mosaic virus
Turnip mosaic virus		 unclassified source_name:Brassica juncea total RNA title:TuMV_1st454 description:siRNA
4 GSM324088 rdr1-1 (TMV-Cg, 3dpi) 5,545 texas tech university 2008-09-24 [HT Sequencing] Illumina Genome Analyzer II (Youcai mosaic virus) (GPL9403) SRA Youcai mosaic virus
Youcai mosaic virus		 unclassified source_name:TMV-Cg infected Arabidopsis thaliana rdr1-1 host. title:rdr1-1 (TMV-Cg, 3dpi) description:The processed data below represent the sequence and normalized abundance of virus-derived small RNAs For the ease of retrieving the small RNA data, we organized the processed small RNAs captured from TMV-Cg-infected rdr1-1 tissues into multiple files, each containing a distinct size class ranging from 18- to 25-nt. _18nt.txt file is small RNAs of 18-nt in size _19nt.txt file is small RNAs of 19-nt in size _20nt.txt file is small RNAs of 20-nt in size _21nt.txt file is small RNAs of 21-nt in size _22nt.txt file is small RNAs of 22-nt in size _23nt.txt file is small RNAs of 23-nt in size _24nt.txt file is small RNAs of 24-nt in size _25nt.txt file is small RNAs of 25-nt in size Host genetic background: rdr1-1; Viral pathogen: TMV-Cg
5 GSM304466 CSV_1st454 1,623 CEH Oxford 2008-07-09 [HT Sequencing] 454 GS (Cocksfoot streak virus) (GPL9382) SRA Cocksfoot streak virus
Cocksfoot streak virus		 unclassified source_name:Cocksfoot grass total RNA title:CSV_1st454 description:siRNA
6 GSM1006709 S2-mock 0 CNRS 2012-09-19 [HT Sequencing] Illumina HiSeq 2000 (Invertebrate iridescent virus 6) (GPL16081) SRA Invertebrate iridescent virus 6
Invertebrate iridescent virus 6		 unclassified source_name:Drosophila S2 cells title:S2-mock description:non infected Drosophila S2 cells
7 GSM1006710 S2-IIV6 0 CNRS 2012-09-19 [HT Sequencing] Illumina HiSeq 2000 (Invertebrate iridescent virus 6) (GPL16081) SRA Invertebrate iridescent virus 6
Invertebrate iridescent virus 6		 unclassified source_name:Drosophila S2 cells title:S2-IIV6 description:IIV6 infected Drosophila S2 cells
8 GSM1006711 yw-IIV6 0 CNRS 2012-09-19 [HT Sequencing] Illumina HiSeq 2000 (Invertebrate iridescent virus 6) (GPL16081) SRA Invertebrate iridescent virus 6
Invertebrate iridescent virus 6		 unclassified source_name:Adult flies title:yw-IIV6 description:IIV6 infected Drosophila adult flies
9 GSM1006712 Dcr2[R416X]-IIV6 0 CNRS 2012-09-19 [HT Sequencing] Illumina HiSeq 2000 (Invertebrate iridescent virus 6) (GPL16081) SRA Invertebrate iridescent virus 6
Invertebrate iridescent virus 6		 unclassified source_name:Adult flies title:Dcr2[R416X]-IIV6 description:IIV6 infected Drosophila adult Dcr2 mutant flies
10 GSM1020234 Footprints from cells infected with HCMV for 5hr, pretreated with cycloheximide 0 UCSF 2012-10-16 [HT Sequencing] Illumina Genome Analyzer II (Human herpesvirus 5) (GPL16185) SRA Human herpesvirus 5
Human herpesvirus 5		 skin Human fibroblasts infected with HCMV, cycloheximide, 5hr
11 GSM1020235 Footprints from cells infected with HCMV for 24hr, pretreated with cycloheximide 0 UCSF 2012-10-16 [HT Sequencing] Illumina Genome Analyzer II (Human herpesvirus 5) (GPL16185) SRA Human herpesvirus 5
Human herpesvirus 5		 skin Human fibroblasts infected with HCMV, cycloheximide, 24hr
12 GSM1020236 Footprints from cells infected with HCMV for 72hr, pretreated with cycloheximide 0 UCSF 2012-10-16 [HT Sequencing] Illumina Genome Analyzer II (Human herpesvirus 5) (GPL16185) SRA Human herpesvirus 5
Human herpesvirus 5		 skin Human fibroblasts infected with HCMV, cycloheximide, 72hr
13 GSM1020237 Footprints from cells infected with HCMV for 72hr, pretreated with cycloheximide, replicate 0 UCSF 2012-10-16 [HT Sequencing] Illumina HiSeq 2000 (Human herpesvirus 5) (GPL16186) SRA Human herpesvirus 5
Human herpesvirus 5		 skin Human fibroblasts infected with HCMV, cycloheximide, 72hr
14 GSM1020238 Footprints from cells infected with HCMV for 5hr, pretreated with Harringtonine 0 UCSF 2012-10-16 [HT Sequencing] Illumina Genome Analyzer II (Human herpesvirus 5) (GPL16185) SRA Human herpesvirus 5
Human herpesvirus 5		 skin Human fibroblasts infected with HCMV, Harringtonine, 5hr
15 GSM1020239 Footprints from cells infected with HCMV for 72hr, pretreated with Harringtonine 0 UCSF 2012-10-16 [HT Sequencing] Illumina Genome Analyzer II (Human herpesvirus 5) (GPL16185) SRA Human herpesvirus 5
Human herpesvirus 5		 skin Human fibroblasts infected with HCMV, Harringtonine, 72hr
16 GSM1020240 Footprints from cells infected with HCMV for 5hr, pretreated with LTM 0 UCSF 2012-10-16 [HT Sequencing] Illumina HiSeq 2000 (Human herpesvirus 5) (GPL16186) SRA Human herpesvirus 5
Human herpesvirus 5		 skin Human fibroblasts infected with HCMV, LTM, 5hr
17 GSM1020241 Footprints from cells infected with HCMV for 72hr, pretreated with LTM 0 UCSF 2012-10-16 [HT Sequencing] Illumina HiSeq 2000 (Human herpesvirus 5) (GPL16186) SRA Human herpesvirus 5
Human herpesvirus 5		 skin Human fibroblasts infected with HCMV, LTM, 72hr
18 GSM1020242 Footprints from cells infected with HCMV for 5hr, no drug pretreatment 0 UCSF 2012-10-16 [HT Sequencing] Illumina Genome Analyzer II (Human herpesvirus 5) (GPL16185) SRA Human herpesvirus 5
Human herpesvirus 5		 skin Human fibroblasts infected with HCMV, none, 5hr
19 GSM1020243 Footprints from cells infected with HCMV for 72hr, no drug pretreatment 0 UCSF 2012-10-16 [HT Sequencing] Illumina Genome Analyzer II (Human herpesvirus 5) (GPL16185) SRA Human herpesvirus 5
Human herpesvirus 5		 skin Human fibroblasts infected with HCMV, none, 72hr
20 GSM1020244 mRNA-seq from cells infected with HCMV for 5hr 0 UCSF 2012-10-16 [HT Sequencing] Illumina Genome Analyzer II (Human herpesvirus 5) (GPL16185) SRA Human herpesvirus 5
Human herpesvirus 5		 skin Human fibroblasts infected with HCMV, 5hr
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