Gene Expression Omnibus (GEO) Overview Version:2014-04-12Japanese page
An overview of the GEO entries broken down by the measurement platforms and the features of the measured samples.
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Data Unit : [ DataSet / Sample / Platform ] Show explanation>> <<Hide explanation
DataSet : Series(GSE) x Platform(GPL). A set of related gene expression data.
Sample : Biological materials.
platform : Methods or instruments used for the gene expression profilings.
The numbers shown in the tabs are the numbers of the data (series, samples or platforms) belonging to the groups.
  Human
(3,985)
  Primates
(80)
  Rodents
(1,907)
  Mammals
(359)
  Vertebrates
(450)
  Invertebrates
(1,139)
  Plants
(2,490)
  Bacteria
(1,901)
  Viruses
(90)
  Phages
(11)
  Unclassified
(542)
  All
(13,032)
 
  SAGE NlaIII
(83)
  SAGE RsaI
(1)
  SAGE Sau3A
(5)
  MPSS
(18)
  GeneChip
(809)
  Tiling Array
(1,310)
  cDNA Array
(2,770)
  Oligo Array
(5,679)
  Bead Array
(210)
  Protein Array
(1)
  Antibody
(28)
  RT-PCR
(209)
  HT-Seq
(1,710)
  Other
(187)
  All
(13,032)
 
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Platform ID Title Number of the probes Institute Submission date Manufacturer Species Platform class Reasoning of the classification
Keywords used for the classification are shown with bold font.
1 GPL7350 Aalborg University Illumina human-6 v2.0 expression beadchip 46,713 Aalborg University 2008-09-22 Illumina Inc Homo sapiens
Homo sapiens
Bead Array oligonucleotide beads, Aalborg University Illumina human-6 v2.0 expression beadchip, The official commercial Illumina human-6 v2.0 expression beadchip is assigned accession number GPL6102. This platform was created to align with Bioconductor normalized data output.
2 GPL7245 Ajou University Mus musculus Array 24K 24,620 Ajou University 2008-09-03 Illumina Mus musculus
Mus musculus
Bead Array oligonucleotide beads, Ajou University Mus musculus Array 24K,
3 GPL16420 All Illumina Human expression beadchips based on nuID 47,230 The Sanford-Burnham Medical Research Institute 2012-12-21 Illumina Inc. Homo sapiens
Homo sapiens
Bead Array oligonucleotide beads, All Illumina Human expression beadchips based on nuID, This platform pools probe IDs of all Illumina Human expression beadchips based on nuID. nuIDs are defnined based on probe sequence, they are universally unique. Using nuIDs will make data integration and maintenance very easier. See Bioconductor lumi package for more details of nuID annotation.
4 GPL1986 Bead-based microRNA profiling platform version 1 282 Yale University 2005-04-25 Homo sapiens
Homo sapiens
Bead Array oligonucleotide beads, Bead-based microRNA profiling platform version 1, Capture oligonucleotides were crosslinked to uniquely-colored Luminex xMap beads, which serve as discriminators of probe identity This set includes 282 oligonucleotides, designed based on miRNA registry rfam 5.0 database. Capture oligonucleotides also recognize miRNAs in Mus musculus and Rattus norvegicus Keywords = bead Keywords = Luminex Keywords = oligonucleotide Keywords = miRNA Keywords = microRNA
5 GPL1987 Bead-based microRNA profiling platform version 2 288 Yale University 2005-04-25 Homo sapiens
Homo sapiens
Bead Array oligonucleotide beads, Bead-based microRNA profiling platform version 2, Capture oligonucleotides were crosslinked to uniquely-colored Luminex xMap beads, which serve as discriminators of probe identity This set includes 282 oligonucleotides, designed based on miRNA registry rfam 5.0 database. Capture oligonucleotides also recognize miRNAs in Mus musculus and Rattus norvegicus Keywords = bead Keywords = Luminex Keywords = oligonucleotide Keywords = miRNA Keywords = microRNA
6 GPL5173 Bead-based microRNA profiling platform version 3 359 Genentech, Inc. 2007-05-18 Luminex Homo sapiens
Homo sapiens
Bead Array oligonucleotide beads, Bead-based microRNA profiling platform version 3, Capture oligonucleotides were crosslinked to uniquely coloured Luminex xMap beads, which serve as discriminator of probe identity. This platform includes 359 probes (310 unique microRNA probes and 6 unique control probes), designed based on the microRNA registry Rfam 7. Keywords = bead Keywords = Luminex Keywords = oligonucleotide Keywords = miRNA Keywords = microRNA
7 GPL10296 CHB Illumina MouseRef-8 v2.0 expression beadchip 18,097 Children's Hospital of Boston 2010-04-06 Illumina Inc. Mus musculus
Mus musculus
Bead Array oligonucleotide beads, CHB Illumina MouseRef-8 v2.0 expression beadchip,
8 GPL15183 CRUK/Melton lab-Human melanoma-71-v2-microRNA expression profiling 1,146 The University of Edinburgh 2012-02-02 Illumina Inc. Homo sapiens
Homo sapiens
Bead Array oligonucleotide beads, CRUK/Melton lab-Human melanoma-71-v2-microRNA expression profiling,
9 GPL13645 Custom human colon-CDMR DNA methylation array (384 CpG) 384 University of Maryland 2011-05-24 Illumina, Inc. Homo sapiens
Homo sapiens
Bead Array oligonucleotide beads, Custom human colon-CDMR DNA methylation array (384 CpG), Custom nucleotide-specific bead array on the Illumina GoldenGate platform to analyze 151 colon cancer-specific differentially DNA-methylated regions (cDMRs) from Irizarry et al. (PMID 19151715).
10 GPL16354 Custom Illumina GoldenGate DNA methylation Beadchip 384 IDIBELL 2012-12-05 Illumina, Inc. Mus musculus
Mus musculus
Bead Array oligonucleotide beads, Custom Illumina GoldenGate DNA methylation Beadchip,
11 GPL5089 Custom Illumina Sentrix Human Cancer Genes 1,385 NCI/NIH 2007-04-13 Illumina Homo sapiens
Homo sapiens
Bead Array oligonucleotide beads, Custom Illumina Sentrix Human Cancer Genes, This custom Illumina Sentrix® Array Matrix-96 microarray contains 50mer probes targeting 697 genes relevant to cancer research. Candidate gene content for the custom array was developed by a voting scheme based on other "cancer gene" lists available on the World Wide Web on November 6, 2003. Eleven lists were assembled from a variety of academic, industrial and government sources and a list of all genes present on all lists was assembled with the genes ranked according to frequency of occurrence. Any gene appearing ≥ four lists was included in the array design. We designed the custom microarray using transcript sequences from NCBI RefSeq build 34.3. Sequences overlapping SNPs as defined in dbSNP build 121 and SNP500Cancer were avoided.
12 GPL5873 DASL Custom Prostate Panel by Gene 526 Mayo Clinic 2007-09-16 Illumina, Inc. Homo sapiens
Homo sapiens
Bead Array oligonucleotide beads, DASL Custom Prostate Panel by Gene, Panel contains 526 probe sets (typically three probes/set). Of these 481 were potentially prostate cancer relevant based upon markers of prostate cancer aggressiveness identified by a Mayo/University of Minnesota Partnership (PMID: 17376245) and previously published studies. DASL Custom Prostate Panel by Probe may be viewed at GPL5831.
13 GPL5831 DASL Custom Prostate Panel by Probe 1,536 Mayo Clinic 2007-09-11 Illumina, Inc. Homo sapiens
Homo sapiens
Bead Array oligonucleotide beads, DASL Custom Prostate Panel by Probe, Panel contains 526 probe sets (typically three probes/set). Of these 481 were potentially prostate cancer relevant based upon markers of prostate cancer aggressiveness identified by a Mayo/University of Minnesota Partnership (PMID: 17376245) and previously published studies. DASL Custom Prostate Panel by Gene may be viewed at GPL5873. The GPL5831.dap file (linked as a Supplementary file at the foot of the record) is required by BeadStudio for processing Illumina image files.
14 GPL8128 DASL Human 1.5K Cancer Panel 1,488 University of Queensland 2009-01-29 Illumina Homo sapiens
Homo sapiens
Bead Array oligonucleotide beads, DASL Human 1.5K Cancer Panel,
15 GPL5858 DASL Human Cancer Panel by Gene 502 Mayo Clinic 2007-09-13 Illumina, Inc Homo sapiens
Homo sapiens
Bead Array oligonucleotide beads, DASL Human Cancer Panel by Gene, DASL Human Cancer Panel by Probe may be viewed at GPL5826.
16 GPL5826 DASL Human Cancer Panel by Probe 1,506 Mayo Clinic 2007-09-10 Illumina, Inc. Homo sapiens
Homo sapiens
Bead Array oligonucleotide beads, DASL Human Cancer Panel by Probe, DASL Human Cancer Panel by Gene may be viewed at GPL5858. The GPL5826.dap file (linked as a Supplementary file at the foot of the record) is required by BeadStudio for processing Illumina image files.
17 GPL13644 Duke/Wray Strongylocentrotus purpuratus 384-v1 336 Duke University 2011-05-24 Illumina Inc. Strongylocentrotus purpuratus
Strongylocentrotus purpuratus
Bead Array oligonucleotide beads, Duke/Wray Strongylocentrotus purpuratus 384-v1,
18 GPL9006 Emory University Custom Breast Cancer DASL Panel 512 Emory University 2009-08-10 Illumina Homo sapiens
Homo sapiens
Bead Array oligonucleotide beads, Emory University Custom Breast Cancer DASL Panel,
19 GPL5943 Emory_University Mouse-6 Expression BeadChip 47K 46,628 Emory University 2007-10-01 Illumina Inc. Mus musculus
Mus musculus
Bead Array oligonucleotide beads, Emory_University Mouse-6 Expression BeadChip 47K, The Sentrix Mouse-6 BeadChip can be used to study expression of over 47,000 mouse transcripts based on MEEBO, RefSeq and RIKEN FANTOM2 content. researchers can generate whole-genome expression profiles for 6 samples in parallel on a single BeadChip. Each array is composed of 3 micron features with average feature redundancy of 30-fold . All features are QCed by a sequential hybridization process called array decoding. The probes are fully screened all-full-length 50-mers and the assay requires 50-100ng of total RNA input.
20 GPL7172 Experimental Therapeutics Centre Human Ref-8 version 2 22,177 Experimental Therapeutics Centre 2008-08-15 Illumina Homo sapiens
Homo sapiens
Bead Array oligonucleotide beads, Experimental Therapeutics Centre Human Ref-8 version 2, Alternative platform created for Experimental Therapeutics Centre Assay Development Group. Equivalent official platform: GPL6104
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