Gene Expression Omnibus (GEO) Overview Version：2013-04-06Japanese page
An overview of the GEO entries broken down by the measurement platforms and the features of the measured samples.
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Data unit : [ DataSet / Sample / Platform ] Show explanation>> <<Hide explanation
DataSet : Series(GSE) x Platform(GPL). A set of related gene expression data.
Sample : Biological materials.
platform : Methods or instruments used for the gene expression profilings.
The numbers shown in the tabs are the numbers of the data (series, samples or platforms) belonging to the groups.
  Human
(220)		   Primates
(8)		   Rodents
(273)		   Mammals
(11)		   Vertebrates
(10)		   Invertebrates
(64)		   Plants
(106)		   Bacteria
(52)		   Viruses
(0)		   Phages
(0)		   Unclassified
(6)		   All
(750)		  
  SAGE NlaIII
(1)		   SAGE RsaI
(0)		   SAGE Sau3A
(0)		   MPSS
(0)		   GeneChip
(331)		   Tiling Array
(56)		   cDNA Array
(111)		   Oligo Array
(105)		   Bead Array
(29)		   Protein Array
(0)		   Antibody
(0)		   RT-PCR
(6)		   HT-Seq
(110)		   Other
(0)		   All
(750)		  
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Title Platform Institute Submission date Species Data size
(probes x samples)		 Sample NCBI
FTP
site
Animal Plant  
brain blood connective reproductive muscular digestive liver lung urinary endo/exo-crine embryo adult aerial structure young aerial structure root meristem/growing tissue flower/sexual organ seed/fruit/grain pooled unclassified
1 Integrative genome-wide expression profiling identifies three distinct molecular subgroups of renal cell carcinoma with different patient outcome (GSE19949) [GeneChip] [GenomeWideSNP_6] Affymetrix Genome-Wide Human SNP 6.0 Array (GPL6801) University of Zurich 2010-01-19 Homo sapiens
Homo sapiens		 214,410,516
(1,880,794 x 114) 		114 by_platform
by_series
2 Affymetrix SNP array data for Marginal Zone Lymphoma samples (GSE24881) [GeneChip] [Mapping250K_Nsp] Affymetrix Mapping 250K Nsp SNP Array (GPL3718) Oncology Institute of Southern Switzerland 2010-10-21 Homo sapiens
Homo sapiens		 57,189,684
(262,338 x 218) 		218 by_platform
by_series
3 Genomic profiles of diffuse large B-cell lymphomas (GSE15127) [GeneChip] [Mapping250K_Nsp] Affymetrix Mapping 250K Nsp SNP Array (GPL3718) Oncology Institute of Southern Switzerland 2009-03-05 Homo sapiens
Homo sapiens		 43,810,446
(262,338 x 167) 		2 1 164 by_platform
by_series
4 The transcriptome of nonpolypoid and polypoid preinvasive lesions of the human large intestine (GSE21962) [GeneChip] [HuEx-1_0-st] Affymetrix Human Exon 1.0 ST Array [transcript (gene) version] (GPL5175) University of Zurich 2010-05-21 Homo sapiens
Homo sapiens		 29,156,548
(316,919 x 92) 		4 88 by_platform
by_series
5 Molecular variability of FLT3/ITD mutants and their impact on the differentiation program of 32D cells (GSE12766) [GeneChip] [MoEx-1_0-st] Affymetrix Mouse Exon 1.0 ST Array [probe set (exon) version] (GPL6193) Department of Biomedicine 2008-09-12 Mus musculus
Mus musculus		 21,366,127
(1,256,831 x 17) 		17 by_platform
by_series
6 Developmental time-course of adult cell-type-specific retina genes of amacrine cells (GSE33088) [GeneChip] [MoEx-1_0-st] Affymetrix Mouse Exon 1.0 ST Array [transcript (gene) version] (GPL6096) Friedrich Miescher Institute 2011-10-19 Mus musculus
Mus musculus		 7,950,656
(283,952 x 28) 		28 by_platform
by_series
7 Retina cells (GSE33089) [GeneChip] [MoEx-1_0-st] Affymetrix Mouse Exon 1.0 ST Array [transcript (gene) version] (GPL6096) Friedrich Miescher Institute 2011-10-19 Mus musculus
Mus musculus		 7,950,656
(283,952 x 28) 		28 by_platform
by_series
8 A20 IN MARGINAL ZONE LYMPHOMAS (GSE13989) [GeneChip] [Mapping250K_Nsp] Affymetrix Mapping 250K Nsp SNP Array (GPL3718) Oncology Institute of Southern Switzerland 2008-12-16 Homo sapiens
Homo sapiens		 7,083,126
(262,338 x 27) 		27 by_platform
by_series
9 A stroma-related gene signature predicts sensitivity to epirubicin-containing neoadjuvant chemotherapy in breast cancer. (GSE4779) [GeneChip] [U133_X3P] Affymetrix Human X3P Array (GPL1352) Swiss Institute of Bioinformatics 2006-05-05 Homo sapiens
Homo sapiens		 6,258,618
(61,359 x 102) 		102 by_platform
by_series
10 Longitudinal study of gene expression in healthy individuals (GSE16028) [GeneChip] [HG-U133_Plus_2] Affymetrix Human Genome U133 Plus 2.0 Array (GPL570) F.Hoffmann-La Roche AG 2009-05-08 Homo sapiens
Homo sapiens		 5,959,575
(54,675 x 109) 		109 by_platform
by_series
11 Sleep deprivation and the brain (GSE9444) [GeneChip] [Mouse430_2] Affymetrix Mouse Genome 430 2.0 Array (GPL1261) University of Lausanne 2007-10-26 Mus musculus
Mus musculus		 5,908,231
(45,101 x 131) 		26 18 87 by_platform
by_series
12 Design of a Tobacco Exon Array with application to investigate the differential cadmium accumulation property in two tobacco varieties (GSE42319) [GeneChip] [TobArrays520623F] Affymetrix Nicotiana tabacum TobArray520623F (GPL16290) Philip Morris Products SA 2012-11-15 Nicotiana tabacum
Nicotiana tabacum		 5,719,182
(272,342 x 21) 		11 10 by_platform
by_series
13 Sleep in a dish: key electrophysiological, molecular, and metabolic signatures of sleep and wakefulness revealed in primary cortical cultures (GSE33491) [GeneChip] [MoEx-1_0-st] Affymetrix Mouse Exon 1.0 ST Array [transcript (gene) version] (GPL6096) UNI Lausanne 2011-11-04 Mus musculus
Mus musculus		 5,111,136
(283,952 x 18) 		18 by_platform
by_series
14 Gene expression patterns in peripheral blood correlate with the extent of coronary artery disease (GSE12288) [GeneChip] [HG-U133A] Affymetrix Human Genome U133A Array (GPL96) Novartis 2008-07-30 Homo sapiens
Homo sapiens		 4,946,826
(22,283 x 222) 		222 by_platform
by_series
15 Copy number variation and gene expression in the mouse (GSE10744) [GeneChip] [Mouse430_2] Affymetrix Mouse Genome 430 2.0 Array (GPL1261) University of Lausanne 2008-03-06 Mus musculus
Mus musculus		 4,870,908
(45,101 x 108) 		18 18 18 18 18 18 by_platform
by_series
16 Glioblastoma from a homogenous cohort of patients treated within clinical trial (GSE7696) [GeneChip] [HG-U133_Plus_2] Affymetrix Human Genome U133 Plus 2.0 Array (GPL570) CHUV 2007-05-03 Homo sapiens
Homo sapiens		 4,592,700
(54,675 x 84) 		84 by_platform
by_series
17 Transcriptomic analyses of renal allograft biopsies reveal conserved rejection signatures and molecular pathways (GSE9493) [GeneChip] [HG-U133_Plus_2] Affymetrix Human Genome U133 Plus 2.0 Array (GPL570) Novartis Pharma AG 2007-11-01 Homo sapiens
Homo sapiens		 4,483,350
(54,675 x 82) 		82 by_platform
by_series
18 Regulation of gene expression in the postnatally developing monkey hippocampal formation (GSE32590) [GeneChip] [HG-U133_Plus_2] Affymetrix Human Genome U133 Plus 2.0 Array (GPL570) University of Fribourg 2011-10-04 Macaca mulatta
Macaca mulatta		 4,374,000
(54,675 x 80) 		80 by_platform
by_series
19 Interferon signaling and treatment outcome in chronic hepatitis C (GSE11190) [GeneChip] [HG-U133_Plus_2] Affymetrix Human Genome U133 Plus 2.0 Array (GPL570) Friedrich Miescher Institute for Biomedical Research 2008-04-16 Homo sapiens
Homo sapiens		 4,264,650
(54,675 x 78) 		38 40 by_platform
by_series
20 Evaluation of affinity-based genome-wide DNA methylation data: effects of CpG density, amplification bias and copy number variation (GSE24546) [GeneChip] [GenomeWideSNP_6] Affymetrix Genome-Wide Human SNP 6.0 Array (GPL6801) University of Zuerich 2010-10-06 Homo sapiens
Homo sapiens		 3,761,588
(1,880,794 x 2) 		1 1 by_platform
by_series
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