Gene Expression Omnibus (GEO) Overview Version：2013-04-06Japanese page
An overview of the GEO entries broken down by the measurement platforms and the features of the measured samples.
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Data Unit : [ DataSet / Sample / Platform ] Show explanation>> <<Hide explanation
DataSet : Series(GSE) x Platform(GPL). A set of related gene expression data.
Sample : Biological materials.
platform : Methods or instruments used for the gene expression profilings.
The numbers shown in the tabs are the numbers of the data (series, samples or platforms) belonging to the groups.
  Human
(12)		   Primates
(0)		   Rodents
(12)		   Mammals
(4)		   Vertebrates
(0)		   Invertebrates
(1)		   Plants
(6)		   Bacteria
(2)		   Viruses
(0)		   Phages
(0)		   Unclassified
(0)		   All
(37)		  
  SAGE NlaIII
(0)		   SAGE RsaI
(0)		   SAGE Sau3A
(0)		   MPSS
(0)		   GeneChip
(6)		   Tiling Array
(1)		   cDNA Array
(26)		   Oligo Array
(4)		   Bead Array
(0)		   Protein Array
(0)		   Antibody
(0)		   RT-PCR
(0)		   HT-Seq
(0)		   Other
(0)		   All
(37)		  
Platform ID Title Number of the probes Institute Submission date Manufacturer Species Platform class Reasoning of the classification
Keywords used for the classification are shown with bold font.
1 GPL339 [MOE430A] Affymetrix Mouse Expression 430A Array 22,690 Affymetrix, Inc. 2003-06-18 Affymetrix Mus musculus
Mus musculus		 GeneChip in situ oligonucleotide, [MOE430A] Affymetrix Mouse Expression 430A Array, Affymetrix submissions are typically submitted to GEO using the GEOarchive method described at http://www.ncbi.nlm.nih.gov/projects/geo/info/geo_affy.html The GeneChip Mouse Genome 430A 2.0 Array is accessioned in GEO as GPL8321. June 03, 2009: annotation table updated with netaffx build 28 June 07, 2012: annotation table updated with netaffx build 32
2 GPL340 [MOE430B] Affymetrix Mouse Expression 430B Array 22,575 Affymetrix, Inc. 2003-06-18 Affymetrix Mus musculus
Mus musculus		 GeneChip in situ oligonucleotide, [MOE430B] Affymetrix Mouse Expression 430B Array, Affymetrix submissions are typically submitted to GEO using the GEOarchive method described at http://www.ncbi.nlm.nih.gov/projects/geo/info/geo_affy.html June 03, 2009: annotation table updated with netaffx build 28 June 21, 2012: annotation table updated with netaffx build 32
3 GPL341 [RAE230A] Affymetrix Rat Expression 230A Array 15,923 Affymetrix, Inc. 2003-06-19 Affymetrix Rattus norvegicus
Rattus norvegicus		 GeneChip in situ oligonucleotide, [RAE230A] Affymetrix Rat Expression 230A Array, Affymetrix submissions are typically submitted to GEO using the GEOarchive method described at http://www.ncbi.nlm.nih.gov/projects/geo/info/geo_affy.html June 03, 2009: annotation table updated with netaffx build 28 June 21, 2012: annotation table updated with netaffx build 32
4 GPL342 [RAE230B] Affymetrix Rat Expression 230B Array 15,333 Affymetrix, Inc. 2003-06-19 Affymetrix Rattus norvegicus
Rattus norvegicus		 GeneChip in situ oligonucleotide, [RAE230B] Affymetrix Rat Expression 230B Array, Affymetrix submissions are typically submitted to GEO using the GEOarchive method described at http://www.ncbi.nlm.nih.gov/projects/geo/info/geo_affy.html Array B of GeneChip Rat Expression Set 230 Has 15333 entries and was indexed 09-Apr-2003 Sequences used in the design of the array were selected from GenBank, dbEST, and RefSeq. Sequence clusters were created from Build 99 of UniGene (June 2002) and refined by analysis and comparison with a number of other publicly available databases including the Baylor College of Medicine Human Genome Sequencing Center's preliminary rat genome assembly (June 2002). In addition, sequences were analyzed for untrimmed low-quality sequence information, correct orientation, false clustering, alternative splicing and alternative polyadenylation.
5 GPL348 Eucalyptus xylem microarray (NCSU) 5,216 University of Florida 2003-06-29 Eucalyptus grandis,Eucalyptus tereticornis
Eucalyptus grandis,Eucalyptus tereticornis		 GeneChip spotted DNA/cDNA, Eucalyptus xylem microarray (NCSU), The cDNA microarray comprises 2608 ESTs, printed in duplicate. Each cDNA has been printed by Pin 1 and 4, or by Pin 2 and 3. 555 ESTs represent the UniGene set derived from the sequencing of a cDNA library from Eucalyptus grandis differentiating xylem generated by the Forest Biotechnology Group at NCSU (egx prefix). The remaining 2053 ESTs are from four libraries from Eucalyptus grandis leaf and root tissue and two libraries from Eucalyptus tereticornis flower tissues, kindly made available by DuPont (Scott Tingey, DuPont Crop Genetics, Newark, DE). These ESTs were selected from a collection of approximately 13,000 sequences, based on their putative function in the biogenesis of cell walls, biogenesis of the cytoskeleton, biosynthesis of phenylpropanoids, protein targeting, c-compound and carbohydrate metabolism, cell growth, signal transduction, protein transport, energy metabolism and other functions potentially associated to wood formation. The cDNA clones were amplified by PCR, purified (Millipore 96-well Multiscreen filter plates) and the quality of the amplification evaluated using agarose gels. Preparations with multiple bands and low quality amplified cDNAs were eliminated and repeated. After dilution in 50% DMSO, cDNAs were printed in duplicate on aminosilane-coated glass slides (Corning) using an Affymetrix 417 Spotter. Keywords = Eucalyptus xylem
6 GPL343 [Bsubtilis] Affymetrix Bsubtilis Genome Array 5,039 Affymetrix, Inc. 2003-06-23 Affymetrix Bacillus subtilis
Bacillus subtilis		 GeneChip in situ oligonucleotide, [Bsubtilis] Affymetrix Bsubtilis Genome Array, Affymetrix submissions are typically submitted to GEO using the GEOarchive method described at http://www.ncbi.nlm.nih.gov/projects/geo/info/geo_affy.html 5021 entries and was indexed 30-Apr-2003
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