Gene Expression Omnibus (GEO) Overview Version:2014-04-12Japanese page
An overview of the GEO entries broken down by the measurement platforms and the features of the measured samples.
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Data Unit : [ DataSet / Sample / Platform ] Show explanation>> <<Hide explanation
DataSet : Series(GSE) x Platform(GPL). A set of related gene expression data.
Sample : Biological materials.
platform : Methods or instruments used for the gene expression profilings.
The numbers shown in the tabs are the numbers of the data (series, samples or platforms) belonging to the groups.
  Human
(103)
  Primates
(4)
  Rodents
(40)
  Mammals
(13)
  Vertebrates
(32)
  Invertebrates
(30)
  Plants
(76)
  Bacteria
(73)
  Viruses
(4)
  Phages
(0)
  Unclassified
(19)
  All
(394)
 
  SAGE NlaIII
(6)
  SAGE RsaI
(0)
  SAGE Sau3A
(1)
  MPSS
(0)
  GeneChip
(20)
  Tiling Array
(27)
  cDNA Array
(58)
  Oligo Array
(216)
  Bead Array
(4)
  Protein Array
(0)
  Antibody
(0)
  RT-PCR
(3)
  HT-Seq
(57)
  Other
(2)
  All
(394)
 
Platform ID Title Number of the probes Institute Submission date Manufacturer Species Platform class Reasoning of the classification
Keywords used for the classification are shown with bold font.
1 GPL10263 [X_tropicalis] Affymetrix Xenopus tropicalis Genome Array 59,021 Affymetrix, Inc. 2010-03-29 Affymetrix Xenopus (Silurana) tropicalis
Xenopus tropicalis
GeneChip in situ oligonucleotide, [X_tropicalis] Affymetrix Xenopus tropicalis Genome Array, Affymetrix submissions are typically submitted to GEO using the GEOarchive method described at http://www.ncbi.nlm.nih.gov/projects/geo/info/geo_affy.html This array was designed in close collaboration with the Xenopus research community as part of the Affymetrix® GeneChip Consortia Program. Sequences used in the design of the array were selected from the Xenopus tropicalis UniGene database (Build 30, July 2006), GenBank® mRNAs for Xenopus tropicalis (up to September 12, 2006), and predicted gene sets from both the DOE Joint Genome Institute (Xentr4 transcripts, file creation date August 17, 2005, download date May 25, 2006) and Ensembl (release 40, download date May 2006).
2 GPL10037 [mbiAth1a520184] Mendel Arabidopsis Genome Array 48,972 Mendel Biotechnology, Inc. 2010-02-11 Affymetrix Arabidopsis thaliana
Arabidopsis thaliana
GeneChip in situ oligonucleotide, [mbiAth1a520184] Mendel Arabidopsis Genome Array, The Mendel Arabidopsis Genome Array is a custom array designed using Affymetrix GeneChip CustomExpress Array Design Guidelines. Feature size is 11 micron. Perfect-match only probe sets are tiled, nominally using 11 probes per transcript, and randomly distributed across the array. Larger numbers of probes were used for certain sequences. The sequences used for probe selections are mostly based on the TAIR6 (www.arabidopsis.org) Nov 15, 2005 release of the Arabidopsis genome. Additional gene models from Mendel proprietary sequences were also used. There are 48,972 probe sets on the array, which have been mapped to 29,543 TAIR AGI identifiers. A number of probe sets from previous Arabidopsis arrays were also tiled. Standard Affymetrix controls were used on the chip along with additional controls made from internal sequences. Probe sequences unavailable due to proprietary nature.
3 GPL10264 Affymetrix Human Exon 1.0 ST Array [CDF: HuEx_1_0_st_v2_main_A20071112_EP.cdf] 43,419 Memorial Sloan-Kettering Cancer Center 2010-03-29 Affymetrix Homo sapiens
Homo sapiens
GeneChip in situ oligonucleotide, Affymetrix Human Exon 1.0 ST Array [CDF: HuEx_1_0_st_v2_main_A20071112_EP.cdf],
4 GPL10063 [HuGene-1_0-st] Affymetrix Human Gene 1.0 ST Array (CDF: HuGene10stv1_Hs_REFSEQ.cdf) 29,875 MFPL 2010-02-18 Affymetrix Homo sapiens
Homo sapiens
GeneChip in situ oligonucleotide, [HuGene-1_0-st] Affymetrix Human Gene 1.0 ST Array (CDF: HuGene10stv1_Hs_REFSEQ.cdf),
5 GPL10184 Affymetrix GeneChip Human Genome U133 Plus 2.0 Array [CDF: Hs133P_Hs_ENSG_8] 27,728 Memorial Sloan Kettering Cancer Center 2010-03-15 Affymetrix Homo sapiens
Homo sapiens
GeneChip in situ oligonucleotide, Affymetrix GeneChip Human Genome U133 Plus 2.0 Array [CDF: Hs133P_Hs_ENSG_8], Custom Brain Array CDF.
6 GPL10226 Affymetrix GeneChip Rat Genome 230 2.0 Array (CDF:rat2302daiplusv6.cdf) 27,630 Amsterdam University 2010-03-18 Affymetrix Rattus norvegicus
Rattus norvegicus
GeneChip in situ oligonucleotide, Affymetrix GeneChip Rat Genome 230 2.0 Array (CDF:rat2302daiplusv6.cdf), This platform is identical to GPL1355 but a custom CDF (rat2302daiplusv6.cdf) was used to extract data. Probes were re-annotated according to de Leeuw et al., 2008 (PMID: 18710586), which resulted in 27,630 probe-sets including 49 controls instead of the 31,099 probe-sets containing 57 controls defined by Affymetrix.
7 GPL10200 [HuEx-1_0-st] Affymetrix Human Exon 1.0 ST Array [CDF: Brainarray Version 11.0.1, HuEx10stv2_Hs_ENTREZG] 23,536 University Of Adelaide 2010-03-17 Affymetrix Homo sapiens
Homo sapiens
GeneChip in situ oligonucleotide, [HuEx-1_0-st] Affymetrix Human Exon 1.0 ST Array [CDF: Brainarray Version 11.0.1, HuEx10stv2_Hs_ENTREZG], Probe set data extracted from custom CDF [Brainarray Version 11.0.1, HuEx10stv2_Hs_ENTREZG]
8 GPL10097 [HsAirwaya520108F] Custom Affymetrix HsAirway array 23,064 The University of Iowa 2010-02-23 Affymetrix Homo sapiens
Homo sapiens
GeneChip in situ oligonucleotide, [HsAirwaya520108F] Custom Affymetrix HsAirway array,
9 GPL10274 Affymetrix GeneChip Human Genome U133 Plus 2.0 Array (Brainarray CustomCDF, HGU133Plus2_Hs_UG_Version 12.cdf) 22,179 University Heidelberg 2010-03-30 Affymetrix Homo sapiens
Homo sapiens
GeneChip in situ oligonucleotide, Affymetrix GeneChip Human Genome U133 Plus 2.0 Array (Brainarray CustomCDF, HGU133Plus2_Hs_UG_Version 12.cdf), http://brainarray.mbni.med.umich.edu/Brainarray/Database/CustomCDF/CDF_download.asp
10 GPL10112 [RaEx-1_0-st] Affymetrix Rat Exon 1.0 ST Array [CDF: ENTREZG 10] 21,334 Duke-NUS 2010-02-26 Affymetrix Rattus norvegicus
Rattus norvegicus
GeneChip in situ oligonucleotide, [RaEx-1_0-st] Affymetrix Rat Exon 1.0 ST Array [CDF: ENTREZG 10], Affymetrix submissions are typically submitted to GEO using the GEOarchive method described at http://www.ncbi.nlm.nih.gov/projects/geo/info/geo_affy.html
11 GPL10050 [ATH1-121501] Affymetrix Arabidopsis ATH1 Genome Array - custom CDF (AtH1_At_TAIR) 20,514 University of Texas at Austin 2010-02-16 Affymetrix Arabidopsis thaliana
Arabidopsis thaliana
GeneChip in situ oligonucleotide, [ATH1-121501] Affymetrix Arabidopsis ATH1 Genome Array - custom CDF (AtH1_At_TAIR),
12 GPL9987 Affymetrix Human Genome U133 Plus 2.0 Array [CDF: HGU133Plus2_Hs_ENSG v12.1.0] 18,394 University of Turku 2010-01-28 Affymetrix Homo sapiens
Homo sapiens
GeneChip in situ oligonucleotide, Affymetrix Human Genome U133 Plus 2.0 Array [CDF: HGU133Plus2_Hs_ENSG v12.1.0], Custom CDF (Brainarray v12.1.0)
13 GPL10175 Affymetrix Human Genome U133 Plus 2.0 Array [MBNI v12 Entrez Gene ID CDF] 17,726 Van Andel Institute 2010-03-14 Affymetrix Homo sapiens
Homo sapiens
GeneChip in situ oligonucleotide, Affymetrix Human Genome U133 Plus 2.0 Array [MBNI v12 Entrez Gene ID CDF], Custom CDF environment (version 12 Entrez Gene ID CDF) created by The Molecular & Behavioral Neuroscience Institute (MBNI), University of Michigan.
14 GPL10149 Stanford Affymetrix Caulobacter crescentus 16.6K CauloHi1 16,613 University of Chicago 2010-03-08 Affymetrix Caulobacter vibrioides
Caulobacter vibrioides
GeneChip in situ oligonucleotide, Stanford Affymetrix Caulobacter crescentus 16.6K CauloHi1,
15 GPL10230 [Vharveyis520694F] US Naval Research Laboratory V campbellii BAA-1116 whole genome microarray 12,717 US Naval Research Laboratory 2010-03-19 Affymetrix Vibrio harveyi ATCC BAA-1116
Vibrio harveyi ATCC BAA-1116
GeneChip in situ oligonucleotide, [Vharveyis520694F] US Naval Research Laboratory V campbellii BAA-1116 whole genome microarray, Affymetrix DNA microarray (Vharveyi520694F) that targets 4831 total CDS from the fully assembled and annotated V. harveyi BAA-1116 genome (Naval Research Laboratory sequencing effort GenBank CP001223-5)
16 GPL10234 Affymetrix Chicken Genome Array [GgChicken_ENTREZG10] 12,495 Peking University 2010-03-22 Affymetrix Gallus gallus
Gallus gallus
GeneChip in situ oligonucleotide, Affymetrix Chicken Genome Array [GgChicken_ENTREZG10],
17 GPL10186 [Bovine] Affymetrix Bovine Genome Array [CDF: Brainarray Version 11.0.1, Bovine_Bt_REFSEQ] 11,495 INRA 2010-03-16 Affymetrix Bos taurus
Bos taurus
GeneChip in situ oligonucleotide, [Bovine] Affymetrix Bovine Genome Array [CDF: Brainarray Version 11.0.1, Bovine_Bt_REFSEQ], This identical to GPL2112 but a custom CDF environment was used to extract data (CDF: Bovine_Bt_REFSEQ). The CDF can be found at the Web link below.
18 GPL10000 [Tgondiia520372] Affymetrix Toxoplasma gondii Custom GeneChip (CDF: ToxoDB version 5) 7,253 University of Pennsylvania 2010-02-02 Affymetrix Toxoplasma gondii
Toxoplasma gondii
GeneChip in situ oligonucleotide, [Tgondiia520372] Affymetrix Toxoplasma gondii Custom GeneChip (CDF: ToxoDB version 5), Affymetrix custom CDF [Tgondiia520372]
19 GPL10276 MIT/Sinskey-R. eutropha-10100-1 custom array [reutropha520723F] 6,733 Massachusetts Institute of Technology 2010-03-31 Affymetrix Cupriavidus necator
Cupriavidus necator
GeneChip in situ oligonucleotide, MIT/Sinskey-R. eutropha-10100-1 custom array [reutropha520723F],
20 GPL9953 TMHRI M28 GAS array 1,765 National Medicines Institute 2010-01-21 Affymetrix Streptococcus pyogenes MGAS6180
Streptococcus pyogenes MGAS6180
GeneChip in situ oligonucleotide, TMHRI M28 GAS array,