Gene Expression Omnibus (GEO) Overview Version：2013-04-06Japanese page
An overview of the GEO entries broken down by the measurement platforms and the features of the measured samples.
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Data Unit : [ DataSet / Sample / Platform ] Show explanation>> <<Hide explanation
DataSet : Series(GSE) x Platform(GPL). A set of related gene expression data.
Sample : Biological materials.
platform : Methods or instruments used for the gene expression profilings.
The numbers shown in the tabs are the numbers of the data (series, samples or platforms) belonging to the groups.
  Human
(16,283)		   Primates
(80)		   Rodents
(6,896)		   Mammals
(298)		   Vertebrates
(469)		   Invertebrates
(517)		   Plants
(5,385)		   Bacteria
(1,328)		   Viruses
(9)		   Phages
(0)		   Unclassified
(100)		   All
(31,365)		  
  SAGE NlaIII
(28)		   SAGE RsaI
(3)		   SAGE Sau3A
(0)		   MPSS
(79)		   GeneChip
(13,710)		   Tiling Array
(988)		   cDNA Array
(2,586)		   Oligo Array
(13,249)		   Bead Array
(523)		   Protein Array
(0)		   Antibody
(0)		   RT-PCR
(24)		   HT-Seq
(160)		   Other
(15)		   All
(31,365)		  
  brain
(1,423)		   blood
(1,747)		   connective
(636)		   reproductive
(386)		   muscular
(141)		   digestive
(773)		   liver
(801)		   lung
(411)		   urinary
(73)		   endo/exo-crine
(743)		   embryo
(694)		   adult aerial structure
(131)		   young aerial structure
(228)		   root
(39)		   meristem/growing tissue
(60)		   flower/sexual organ
(92)		   seed/fruit/grain
(76)		   pooled
(306)		   unclassified
(4,950)		   all
(13,710)		  
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Sample ID Title Number of Data Institute Submission date Platform Sample type Species Organ class Reasoning of the classification
Keywords used for the classification are shown with bold font.
1 GSM298710 SMAD2/3 localization in TGF-beta-treated HaCaT cells 5,111,669 University of Tokyo 2008-06-17 [GeneChip] Human Promoter Array 1.0R - NCBI build_35 (GPL7026) genomic Homo sapiens
Homo sapiens		 unclassified source_name:Smad2_3_ChIP_DNA Input_DNA title:SMAD2/3 localization in TGF-beta-treated HaCaT cells description:HaCaT cells treated with TGF-beta3 were used for Smad2/3 ChIP. Sheared input genomic DNA was used for control. Both Smad2/3 ChIP and input samples were prepared as biological duplicate.
2 GSM866991 Flag-CDX1 ChIP-chip in gastric epithelial cells: CDX1 induction +, 24 h 5,111,669 University of Tokyo 2012-01-26 [GeneChip] Human Promoter Array 1.0R - NCBI build_35 (GPL7026) genomic Homo sapiens
Homo sapiens		 stomach Flag-CDX1 ChIP-chip in gastric epithelial cells: CDX1 induction +, 24 h
3 GSM243264 CTCF localization in B-cell (ENCODE) 2,078,218 The University of Tokyo 2007-11-16 [GeneChip] GeneChip ENCODEver2.0R Array - NCBI build 36 (GPL6129) genomic Homo sapiens
Homo sapiens		 lymphnode CTCF localization in B-cell (ENCODE)
4 GSM243265 CTCF localization in RPE cells (ENCODE) 2,078,218 The University of Tokyo 2007-11-16 [GeneChip] GeneChip ENCODEver2.0R Array - NCBI build 36 (GPL6129) genomic Homo sapiens
Homo sapiens		 retina CTCF localization in RPE cells (ENCODE)
5 GSM243266 hScc1 distribution in B-cell (ENCODE) 2,078,218 The University of Tokyo 2007-11-16 [GeneChip] GeneChip ENCODEver2.0R Array - NCBI build 36 (GPL6129) genomic Homo sapiens
Homo sapiens		 lymphnode hScc1 distribution in B-cell (ENCODE)
6 GSM243267 hSmc3 distribution in RPE (ENCODE) 2,078,218 The University of Tokyo 2007-11-16 [GeneChip] GeneChip ENCODEver2.0R Array - NCBI build 36 (GPL6129) genomic Homo sapiens
Homo sapiens		 retina hSmc3 distribution in RPE (ENCODE)
7 GSM243269 hScc1 distribution in RPE (ENCODE) 2,078,218 The University of Tokyo 2007-11-16 [GeneChip] GeneChip ENCODEver2.0R Array - NCBI build 36 (GPL6129) genomic Homo sapiens
Homo sapiens		 retina hScc1 distribution in RPE (ENCODE)
8 GSM772577 HeLa_Mock_rep1 1,384,231 University of Tokyo 2011-08-03 [GeneChip] [HuEx-1_0-st] Affymetrix Human Exon 1.0 ST Array [probe set (exon) version] (GPL5188) RNA Homo sapiens
Homo sapiens		 skin HeLa cells, mock
9 GSM772578 HeLa_Mock_rep2 1,384,231 University of Tokyo 2011-08-03 [GeneChip] [HuEx-1_0-st] Affymetrix Human Exon 1.0 ST Array [probe set (exon) version] (GPL5188) RNA Homo sapiens
Homo sapiens		 skin HeLa cells, mock
10 GSM772579 HeLa_Mock_rep3 1,384,231 University of Tokyo 2011-08-03 [GeneChip] [HuEx-1_0-st] Affymetrix Human Exon 1.0 ST Array [probe set (exon) version] (GPL5188) RNA Homo sapiens
Homo sapiens		 skin HeLa cells, mock
11 GSM772580 HeLa_WT_rep1 1,384,231 University of Tokyo 2011-08-03 [GeneChip] [HuEx-1_0-st] Affymetrix Human Exon 1.0 ST Array [probe set (exon) version] (GPL5188) RNA Homo sapiens
Homo sapiens		 skin HeLa cells, wild-type U2AF35
12 GSM772581 HeLa_WT_rep2 1,384,231 University of Tokyo 2011-08-03 [GeneChip] [HuEx-1_0-st] Affymetrix Human Exon 1.0 ST Array [probe set (exon) version] (GPL5188) RNA Homo sapiens
Homo sapiens		 skin HeLa cells, wild-type U2AF35
13 GSM772582 HeLa_WT_rep3 1,384,231 University of Tokyo 2011-08-03 [GeneChip] [HuEx-1_0-st] Affymetrix Human Exon 1.0 ST Array [probe set (exon) version] (GPL5188) RNA Homo sapiens
Homo sapiens		 skin HeLa cells, wild-type U2AF35
14 GSM772583 HeLa_S34F_rep1 1,384,231 University of Tokyo 2011-08-03 [GeneChip] [HuEx-1_0-st] Affymetrix Human Exon 1.0 ST Array [probe set (exon) version] (GPL5188) RNA Homo sapiens
Homo sapiens		 skin HeLa cells, S34F U2AF35
15 GSM772584 HeLa_S34F_rep2 1,384,231 University of Tokyo 2011-08-03 [GeneChip] [HuEx-1_0-st] Affymetrix Human Exon 1.0 ST Array [probe set (exon) version] (GPL5188) RNA Homo sapiens
Homo sapiens		 skin HeLa cells, S34F U2AF35
16 GSM772585 HeLa_S34F_rep3 1,384,231 University of Tokyo 2011-08-03 [GeneChip] [HuEx-1_0-st] Affymetrix Human Exon 1.0 ST Array [probe set (exon) version] (GPL5188) RNA Homo sapiens
Homo sapiens		 skin HeLa cells, S34F U2AF35
17 GSM1039718 Primary cerebellar neurons_conrtol shRNA_rep1 1,256,831 Nagoya University School of Medicine 2012-11-20 [GeneChip] [MoEx-1_0-st] Affymetrix Mouse Exon 1.0 ST Array [probe set (exon) version] (GPL6193) RNA Mus musculus
Mus musculus		 cerebrum primary cerebellar neurons, conrtol shRNA
18 GSM1039719 Primary cerebellar neurons_shRNA FUS1_rep1 1,256,831 Nagoya University School of Medicine 2012-11-20 [GeneChip] [MoEx-1_0-st] Affymetrix Mouse Exon 1.0 ST Array [probe set (exon) version] (GPL6193) RNA Mus musculus
Mus musculus		 cerebrum primary cerebellar neurons, shRNA FUS1
19 GSM1039720 Primary cerebellar neurons_shRNA FUS2_rep1 1,256,831 Nagoya University School of Medicine 2012-11-20 [GeneChip] [MoEx-1_0-st] Affymetrix Mouse Exon 1.0 ST Array [probe set (exon) version] (GPL6193) RNA Mus musculus
Mus musculus		 cerebrum primary cerebellar neurons, shRNA FUS2
20 GSM1039721 Primary cerebellar neurons_conrtol shRNA_rep2 1,256,831 Nagoya University School of Medicine 2012-11-20 [GeneChip] [MoEx-1_0-st] Affymetrix Mouse Exon 1.0 ST Array [probe set (exon) version] (GPL6193) RNA Mus musculus
Mus musculus		 cerebrum primary cerebellar neurons, conrtol shRNA
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