Gene Expression Omnibus (GEO) Overview Version´╝Ü2014-04-12Japanese page
An overview of the GEO entries broken down by the measurement platforms and the features of the measured samples.
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Data Unit : [ DataSet / Sample / Platform ] Show explanation>> <<Hide explanation
DataSet : Series(GSE) x Platform(GPL). A set of related gene expression data.
Sample : Biological materials.
platform : Methods or instruments used for the gene expression profilings.
The numbers shown in the tabs are the numbers of the data (series, samples or platforms) belonging to the groups.
  Human
(21,397)
  Primates
(80)
  Rodents
(9,352)
  Mammals
(342)
  Vertebrates
(534)
  Invertebrates
(726)
  Plants
(6,411)
  Bacteria
(1,450)
  Viruses
(9)
  Phages
(0)
  Unclassified
(109)
  All
(40,410)
 
  SAGE NlaIII
(28)
  SAGE RsaI
(3)
  SAGE Sau3A
(0)
  MPSS
(129)
  GeneChip
(16,174)
  Tiling Array
(1,407)
  cDNA Array
(3,164)
  Oligo Array
(18,094)
  Bead Array
(887)
  Protein Array
(0)
  Antibody
(0)
  RT-PCR
(60)
  HT-Seq
(436)
  Other
(15)
  All
(40,410)
 
  brain
(1,631)
  blood
(2,201)
  connective
(725)
  reproductive
(566)
  muscular
(182)
  digestive
(807)
  liver
(1,020)
  lung
(586)
  urinary
(114)
  endo/exo-crine
(791)
  embryo
(852)
  adult aerial structure
(155)
  young aerial structure
(244)
  root
(53)
  meristem/growing tissue
(60)
  flower/sexual organ
(92)
  seed/fruit/grain
(76)
  pooled
(380)
  unclassified
(5,639)
  all
(16,174)
 
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Sample ID Title Number of Data Institute Submission date Platform Sample type Species Organ class Reasoning of the classification
Keywords used for the classification are shown with bold font.
1 GSM772577 HeLa_Mock_rep1 1,384,231 University of Tokyo 2011-08-03 [GeneChip] [HuEx-1_0-st] Affymetrix Human Exon 1.0 ST Array [probe set (exon) version] (GPL5188) RNA Homo sapiens
Homo sapiens
skin HeLa cells, mock
2 GSM772578 HeLa_Mock_rep2 1,384,231 University of Tokyo 2011-08-03 [GeneChip] [HuEx-1_0-st] Affymetrix Human Exon 1.0 ST Array [probe set (exon) version] (GPL5188) RNA Homo sapiens
Homo sapiens
skin HeLa cells, mock
3 GSM772579 HeLa_Mock_rep3 1,384,231 University of Tokyo 2011-08-03 [GeneChip] [HuEx-1_0-st] Affymetrix Human Exon 1.0 ST Array [probe set (exon) version] (GPL5188) RNA Homo sapiens
Homo sapiens
skin HeLa cells, mock
4 GSM772580 HeLa_WT_rep1 1,384,231 University of Tokyo 2011-08-03 [GeneChip] [HuEx-1_0-st] Affymetrix Human Exon 1.0 ST Array [probe set (exon) version] (GPL5188) RNA Homo sapiens
Homo sapiens
skin HeLa cells, wild-type U2AF35
5 GSM772581 HeLa_WT_rep2 1,384,231 University of Tokyo 2011-08-03 [GeneChip] [HuEx-1_0-st] Affymetrix Human Exon 1.0 ST Array [probe set (exon) version] (GPL5188) RNA Homo sapiens
Homo sapiens
skin HeLa cells, wild-type U2AF35
6 GSM772582 HeLa_WT_rep3 1,384,231 University of Tokyo 2011-08-03 [GeneChip] [HuEx-1_0-st] Affymetrix Human Exon 1.0 ST Array [probe set (exon) version] (GPL5188) RNA Homo sapiens
Homo sapiens
skin HeLa cells, wild-type U2AF35
7 GSM772583 HeLa_S34F_rep1 1,384,231 University of Tokyo 2011-08-03 [GeneChip] [HuEx-1_0-st] Affymetrix Human Exon 1.0 ST Array [probe set (exon) version] (GPL5188) RNA Homo sapiens
Homo sapiens
skin HeLa cells, S34F U2AF35
8 GSM772584 HeLa_S34F_rep2 1,384,231 University of Tokyo 2011-08-03 [GeneChip] [HuEx-1_0-st] Affymetrix Human Exon 1.0 ST Array [probe set (exon) version] (GPL5188) RNA Homo sapiens
Homo sapiens
skin HeLa cells, S34F U2AF35
9 GSM772585 HeLa_S34F_rep3 1,384,231 University of Tokyo 2011-08-03 [GeneChip] [HuEx-1_0-st] Affymetrix Human Exon 1.0 ST Array [probe set (exon) version] (GPL5188) RNA Homo sapiens
Homo sapiens
skin HeLa cells, S34F U2AF35
10 GSM243258 p53 localization (ENCODE) 756,061 The University of Tokyo 2007-11-15 [GeneChip] GeneChip ENCODE01 1.0 Array - NCBI build 36 (GPL6130) genomic Homo sapiens
Homo sapiens
skin p53 localization on ENCODE region in HeLa cells.
11 GSM243262 hSmc3 distribution in G2 (ENCODE) under the depletion of hScc1 by RNAi 756,061 The University of Tokyo 2007-11-16 [GeneChip] GeneChip ENCODE01 1.0 Array - NCBI build 36 (GPL6130) genomic Homo sapiens
Homo sapiens
skin hSmc3 localization on ENCODE region in HeLa cells in the absence of hScc1.
12 GSM243276 CTCF localization in G2 under CTCF RNAi (ENCODE) 756,061 The University of Tokyo 2007-11-16 [GeneChip] GeneChip ENCODE01 1.0 Array - NCBI build 36 (GPL6130) genomic Homo sapiens
Homo sapiens
skin CTCF localization on ENCODE region in HeLa cells in the absence of CTCF. As WCE fraction, the same samples as we used in GSM243278 were used.
13 GSM243277 CTCF localization in G2 under hScc1 RNAi (ENCODE) 756,061 The University of Tokyo 2007-11-16 [GeneChip] GeneChip ENCODE01 1.0 Array - NCBI build 36 (GPL6130) genomic Homo sapiens
Homo sapiens
skin CTCF localization on ENCODE region in HeLa cells in the absence of hScc1. As WCE fraction, the same samples used for GSM243278 were used for normalization.
14 GSM243278 hScc1 localization in G2 in the absence of CTCF (ENCODE) 756,061 The University of Tokyo 2007-11-16 [GeneChip] GeneChip ENCODE01 1.0 Array - NCBI build 36 (GPL6130) genomic Homo sapiens
Homo sapiens
skin hScc1 localization on ENCODE region in HeLa cells in the absence of CTCF.
15 GSM1241428 Oral dysplasia sample1 262,338 Miyazaki university 2013-09-30 [GeneChip] [Mapping250K_Nsp] Affymetrix Mapping 250K Nsp SNP Array (GPL3718) genomic Homo sapiens
Homo sapiens
skin oral dysplasia 1
16 GSM1241429 Oral dysplasia sample2 262,338 Miyazaki university 2013-09-30 [GeneChip] [Mapping250K_Nsp] Affymetrix Mapping 250K Nsp SNP Array (GPL3718) genomic Homo sapiens
Homo sapiens
skin oral dysplasia 2
17 GSM1241430 Oral dysplasia sample3 262,338 Miyazaki university 2013-09-30 [GeneChip] [Mapping250K_Nsp] Affymetrix Mapping 250K Nsp SNP Array (GPL3718) genomic Homo sapiens
Homo sapiens
skin oral dysplasia 3
18 GSM1241431 Oral dysplasia sample4 262,338 Miyazaki university 2013-09-30 [GeneChip] [Mapping250K_Nsp] Affymetrix Mapping 250K Nsp SNP Array (GPL3718) genomic Homo sapiens
Homo sapiens
skin oral dysplasia 4
19 GSM1241432 Oral dysplasia sample5 262,338 Miyazaki university 2013-09-30 [GeneChip] [Mapping250K_Nsp] Affymetrix Mapping 250K Nsp SNP Array (GPL3718) genomic Homo sapiens
Homo sapiens
skin oral dysplasia 5
20 GSM1241433 Oral dysplasia sample6 262,338 Miyazaki university 2013-09-30 [GeneChip] [Mapping250K_Nsp] Affymetrix Mapping 250K Nsp SNP Array (GPL3718) genomic Homo sapiens
Homo sapiens
skin oral dysplasia 6
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