Gene Expression Omnibus (GEO) Overview Version：2013-04-06Japanese page
An overview of the GEO entries broken down by the measurement platforms and the features of the measured samples.

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Data Unit : [ DataSet / Sample / Platform ] Show explanation>> <<Hide explanation
DataSet : Series(GSE) x Platform(GPL). A set of related gene expression data.
Sample : Biological materials.
platform : Methods or instruments used for the gene expression profilings.
The numbers shown in the tabs are the numbers of the data (series, samples or platforms) belonging to the groups.
  Human
(16,283)		   Primates
(80)		   Rodents
(6,896)		   Mammals
(298)		   Vertebrates
(469)		   Invertebrates
(517)		   Plants
(5,385)		   Bacteria
(1,328)		   Viruses
(9)		   Phages
(0)		   Unclassified
(100)		   All
(31,365)		  
  SAGE NlaIII
(28)		   SAGE RsaI
(3)		   SAGE Sau3A
(0)		   MPSS
(79)		   GeneChip
(13,710)		   Tiling Array
(0)		   cDNA Array
(0)		   Oligo Array
(13,249)		   Bead Array
(0)		   Protein Array
(0)		   Antibody
(0)		   RT-PCR
(24)		   HT-Seq
(0)		   Other
(15)		   All
(31,365)		  
  brain
(0)		   blood
(0)		   connective
(0)		   reproductive
(0)		   muscular
(0)		   digestive
(0)		   liver
(0)		   lung
(0)		   urinary
(0)		   endo/exo-crine
(0)		   embryo
(0)		   adult aerial structure
(131)		   young aerial structure
(228)		   root
(39)		   meristem/growing tissue
(60)		   flower/sexual organ
(92)		   seed/fruit/grain
(76)		   pooled
(0)		   unclassified
(4,950)		   all
(13,710)		  
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Sample ID Title Number of Data Institute Submission date Platform Sample type Species Organ class Reasoning of the classification
Keywords used for the classification are shown with bold font.
1 GSM298710 SMAD2/3 localization in TGF-beta-treated HaCaT cells 5,111,669 University of Tokyo 2008-06-17 [GeneChip] Human Promoter Array 1.0R - NCBI build_35 (GPL7026) genomic Homo sapiens
Homo sapiens		 unclassified source_name:Smad2_3_ChIP_DNA Input_DNA title:SMAD2/3 localization in TGF-beta-treated HaCaT cells description:HaCaT cells treated with TGF-beta3 were used for Smad2/3 ChIP. Sheared input genomic DNA was used for control. Both Smad2/3 ChIP and input samples were prepared as biological duplicate.
2 GSM742244 C2C12-control siRNA-1 1,195,555 Nagoya University Graduate School of Medicine 2011-06-15 [GeneChip] [MoEx-1_0-st] Affymetrix Mouse Exon 1.0 ST Array [probe set (exon) version] (GPL6193) RNA Mus musculus
Mus musculus		 unclassified source_name:C2C12, control siRNA title:C2C12-control siRNA-1 description:C2C12 treated with control siRNA; replicate 1 cont1
3 GSM742245 C2C12-control siRNA-2 1,195,555 Nagoya University Graduate School of Medicine 2011-06-15 [GeneChip] [MoEx-1_0-st] Affymetrix Mouse Exon 1.0 ST Array [probe set (exon) version] (GPL6193) RNA Mus musculus
Mus musculus		 unclassified source_name:C2C12, control siRNA title:C2C12-control siRNA-2 description:C2C12 treated with control siRNA; replicate 2 cont2
4 GSM742246 C2C12-control siRNA-3 1,195,555 Nagoya University Graduate School of Medicine 2011-06-15 [GeneChip] [MoEx-1_0-st] Affymetrix Mouse Exon 1.0 ST Array [probe set (exon) version] (GPL6193) RNA Mus musculus
Mus musculus		 unclassified source_name:C2C12, control siRNA title:C2C12-control siRNA-3 description:C2C12 treated with control siRNA; replicate 3 cont3
5 GSM742247 C2C12-Cugbp1 siRNA-1 1,195,555 Nagoya University Graduate School of Medicine 2011-06-15 [GeneChip] [MoEx-1_0-st] Affymetrix Mouse Exon 1.0 ST Array [probe set (exon) version] (GPL6193) RNA Mus musculus
Mus musculus		 unclassified source_name:C2C12, Cugbp1 siRNA title:C2C12-Cugbp1 siRNA-1 description:C2C12 treated with Cugbp1 siRNA; replicate 1 CUGi4
6 GSM742248 C2C12-Cugbp1 siRNA-2 1,195,555 Nagoya University Graduate School of Medicine 2011-06-15 [GeneChip] [MoEx-1_0-st] Affymetrix Mouse Exon 1.0 ST Array [probe set (exon) version] (GPL6193) RNA Mus musculus
Mus musculus		 unclassified source_name:C2C12, Cugbp1 siRNA title:C2C12-Cugbp1 siRNA-2 description:C2C12 treated with Cugbp1 siRNA; replicate 2 CUGi5
7 GSM742249 C2C12-Cugbp1 siRNA-3 1,195,555 Nagoya University Graduate School of Medicine 2011-06-15 [GeneChip] [MoEx-1_0-st] Affymetrix Mouse Exon 1.0 ST Array [probe set (exon) version] (GPL6193) RNA Mus musculus
Mus musculus		 unclassified source_name:C2C12, Cugbp1 siRNA title:C2C12-Cugbp1 siRNA-3 description:C2C12 treated with Cugbp1 siRNA; replicate 3 CUGi6
8 GSM742250 C2C12-Mbnl1 siRNA-1 1,195,555 Nagoya University Graduate School of Medicine 2011-06-15 [GeneChip] [MoEx-1_0-st] Affymetrix Mouse Exon 1.0 ST Array [probe set (exon) version] (GPL6193) RNA Mus musculus
Mus musculus		 unclassified source_name:C2C12, Mbnl1 siRNA title:C2C12-Mbnl1 siRNA-1 description:C2C12 treated with MBNL1 siRNA; replicate 1 MBNi7
9 GSM742251 C2C12-Mbnl1 siRNA-2 1,195,555 Nagoya University Graduate School of Medicine 2011-06-15 [GeneChip] [MoEx-1_0-st] Affymetrix Mouse Exon 1.0 ST Array [probe set (exon) version] (GPL6193) RNA Mus musculus
Mus musculus		 unclassified source_name:C2C12, Mbnl1 siRNA title:C2C12-Mbnl1 siRNA-2 description:C2C12 treated with MBNL1 siRNA; replicate 2 MBNi8
10 GSM742252 C2C12-Mbnl1 siRNA-3 1,195,555 Nagoya University Graduate School of Medicine 2011-06-15 [GeneChip] [MoEx-1_0-st] Affymetrix Mouse Exon 1.0 ST Array [probe set (exon) version] (GPL6193) RNA Mus musculus
Mus musculus		 unclassified source_name:C2C12, Mbnl1 siRNA title:C2C12-Mbnl1 siRNA-3 description:C2C12 treated with MBNL1 siRNA; replicate 3 MBNi9
11 GSM538794 MKN45P_Lysate_rep1 877,986 Shizuoka Cancer Center Research Institute 2010-04-28 [GeneChip] [HuEx-1_0-st] Affymetrix Human Exon 1.0 ST Array [probe set (exon) version] (GPL5188) RNA Homo sapiens
Homo sapiens		 unclassified source_name:MKN45P, lysate, replicate 1 title:MKN45P_Lysate_rep1 description:gene expression and variation of alternative splicing in Cellular lysate of MKN45P
12 GSM243259 CTCF localization in G2 (ENCODE) 756,061 The University of Tokyo 2007-11-15 [GeneChip] GeneChip ENCODE01 1.0 Array - NCBI build 36 (GPL6130) genomic Homo sapiens
Homo sapiens		 unclassified source_name:Chromatin Immuno-precipitated DNA Whole cell extract (WCE) fraction used for the normalization of ChIP fraction. title:CTCF localization in G2 (ENCODE) description:CTCF distribution in G2 phase.
13 GSM243260 hScc1 distribution in G1 (ENCODE) 756,061 The University of Tokyo 2007-11-16 [GeneChip] GeneChip ENCODE01 1.0 Array - NCBI build 36 (GPL6130) genomic Homo sapiens
Homo sapiens		 unclassified source_name:Chromatin Immuno-precipitated DNA Whole cell extract (WCE) fraction used for the normalization of ChIP fraction. title:hScc1 distribution in G1 (ENCODE) description:hScc1 distribution in G1 phase.
14 GSM243261 hScc1 localization in G2 (ENCODE) 756,061 The University of Tokyo 2007-11-16 [GeneChip] GeneChip ENCODE01 1.0 Array - NCBI build 36 (GPL6130) genomic Homo sapiens
Homo sapiens		 unclassified source_name:Chromatin Immuno-precipitated DNA Whole cell extract (WCE) fraction used for the normalization of ChIP fraction. title:hScc1 localization in G2 (ENCODE) description:hScc1 distribution in G2 phase.
15 GSM243263 hSmc3 distribution in G2 (ENCODE) 756,061 The University of Tokyo 2007-11-16 [GeneChip] GeneChip ENCODE01 1.0 Array - NCBI build 36 (GPL6130) genomic Homo sapiens
Homo sapiens		 unclassified source_name:Chromatin Immuno-precipitated DNA Whole cell extract (WCE) fraction used for the normalization of ChIP fraction. title:hSmc3 distribution in G2 (ENCODE) description:hSmc3 distribution in G2 phase.
16 GSM243268 hSmc3 distribution in M-phase (ENCODE) 756,061 The University of Tokyo 2007-11-16 [GeneChip] GeneChip ENCODE01 1.0 Array - NCBI build 36 (GPL6130) genomic Homo sapiens
Homo sapiens		 unclassified source_name:Chromatin Immuno-precipitated DNA Whole cell extract (WCE) fraction used for the normalization of ChIP fraction. title:hSmc3 distribution in M-phase (ENCODE) description:hSmc3 distribution in M-phase. Wce fraction used for the analyses of SA2 in G2 phase was used for normalization.
17 GSM243274 SA2 distribution in G2 (ENCODE) 756,061 The University of Tokyo 2007-11-16 [GeneChip] GeneChip ENCODE01 1.0 Array - NCBI build 36 (GPL6130) genomic Homo sapiens
Homo sapiens		 unclassified source_name:Chromatin Immuno-precipitated DNA Whole cell extract (WCE) fraction used for the normalization of ChIP fraction. title:SA2 distribution in G2 (ENCODE) description:SA2 distribution in G2 phase.
18 GSM253755 2A12_P1_N_EX1_POS 262,338 Tokyo University 2007-12-30 [GeneChip] [Mapping250K_Nsp] Affymetrix Mapping 250K Nsp SNP Array (GPL3718) genomic Homo sapiens
Homo sapiens		 unclassified source_name:pooled DNA for CTL-2A12 reactive clones title:2A12_P1_N_EX1_POS description:Compared with pooled sample from CTL negative clones.
19 GSM253756 2A12_P1_N_EX2_POS 262,338 Tokyo University 2007-12-30 [GeneChip] [Mapping250K_Nsp] Affymetrix Mapping 250K Nsp SNP Array (GPL3718) genomic Homo sapiens
Homo sapiens		 unclassified source_name:pooled DNA for CTL-2A12 reactive clones title:2A12_P1_N_EX2_POS description:Compared with pooled sample from CTL negative clones.
20 GSM253763 2A12_P1_N_EX1_NEG 262,338 Tokyo University 2007-12-30 [GeneChip] [Mapping250K_Nsp] Affymetrix Mapping 250K Nsp SNP Array (GPL3718) genomic Homo sapiens
Homo sapiens		 unclassified source_name:pooled DNA for CTL-2A12 non-reactive clones title:2A12_P1_N_EX1_NEG description:Compared with pooled sample from CTL positive clones.
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