Gene Expression Omnibus (GEO) Overview Version：2013-05-25Japanese page
An overview of the GEO entries broken down by the measurement platforms and the features of the measured samples.
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Data unit : [ DataSet / Sample / Platform ] Show explanation>> <<Hide explanation
DataSet : Series(GSE) x Platform(GPL). A set of related gene expression data.
Sample : Biological materials.
platform : Methods or instruments used for the gene expression profilings.
The numbers shown in the tabs are the numbers of the data (series, samples or platforms) belonging to the groups.
  Human
(18,438)		   Primates
(205)		   Rodents
(12,530)		   Mammals
(774)		   Vertebrates
(1,152)		   Invertebrates
(3,917)		   Plants
(6,619)		   Bacteria
(2,962)		   Viruses
(50)		   Phages
(4)		   Unclassified
(282)		   All
(46,983)		  
  SAGE NlaIII
(224)		   SAGE RsaI
(1)		   SAGE Sau3A
(16)		   MPSS
(56)		   GeneChip
(17,050)		   Tiling Array
(3,561)		   cDNA Array
(5,843)		   Oligo Array
(12,019)		   Bead Array
(2,978)		   Protein Array
(1)		   Antibody
(38)		   RT-PCR
(245)		   HT-Seq
(4,757)		   Other
(182)		   All
(46,983)		  
1   |   2   |   3   |   4   |   5      »      [238]
Title Platform Institute Submission date Species Data size
(probes x samples)		 Sample NCBI
FTP
site
Animal Plant  
brain blood connective reproductive muscular digestive liver lung urinary endo/exo-crine embryo adult aerial structure young aerial structure root meristem/growing tissue flower/sexual organ seed/fruit/grain pooled unclassified
1 Transcriptional effects of overexpression of the mtrCDE operon in Neisseria gonorrhoeae due to a cis-acting point mutation (GSE47048) [HT Sequencing] Illumina HiSeq 2000 (Neisseria gonorrhoeae FA19) (GPL17174) Emory University 2013-05-17 Neisseria gonorrhoeae FA19
Neisseria gonorrhoeae FA19		 6
(0 x 6) 		6 by_platform
by_series
2 Next Generation Sequencing Facilitates Quantitative Analysis of Wild Type and PPARbeta-null mice during liver regeneration (GSE47062) [HT Sequencing] Illumina HiSeq 2000 (Mus musculus) (GPL13112) UCD medical center 2013-05-17 Mus musculus
Mus musculus		 2
(0 x 2) 		2 by_platform
by_series
3 Transcription Factor Foxo1 Controls Memory CD8+ T Cell Responses To Infection [ChIP-Seq] (GSE46943) [HT Sequencing] Illumina Genome Analyzer IIx (Mus musculus) (GPL11002) Cold Spring Harbor Laboratory 2013-05-15 Mus musculus
Mus musculus		 4
(0 x 4) 		4 by_platform
by_series
4 Transcription Factor Foxo1 Controls Memory CD8+ T Cell Responses To Infection (GSE46944) [HT Sequencing] Illumina Genome Analyzer IIx (Mus musculus) (GPL11002) Cold Spring Harbor Laboratory 2013-05-15 Mus musculus
Mus musculus		 4
(0 x 4) 		4 by_platform
by_series
5 Transcriptomic and phylogenetic analysis of a bacterial cell cycle reveals strong associations between gene co-expression and evolution (GSE46915) [HT Sequencing] AB SOLiD System 3.0 (Caulobacter vibrioides) (GPL17158) Yale University 2013-05-14 Caulobacter vibrioides
Caulobacter vibrioides		 15
(0 x 15) 		15 by_platform
by_series
6 In vivo live imaging of RNA polymerase II transcription factories in primary cells (GSE46849) [HT Sequencing] Illumina HiSeq 2000 (Mus musculus) (GPL13112) UniComputing, UniResearch 2013-05-12 Mus musculus
Mus musculus		 4
(0 x 4) 		4 by_platform
by_series
7 Nucleotide-resolution, genome-wide, 5'-end maps of the transcriptome of Propionibacterium acnes (cultured with and without potassium downshift) (GSE46810) [HT Sequencing] Illumina HiSeq 2000 (Propionibacterium acnes KPA171202) (GPL17147) University of Leeds 2013-05-09 Propionibacterium acnes KPA171202
Propionibacterium acnes KPA171202		 4
(0 x 4) 		4 by_platform
by_series
8 Role of Retinoids x Receptor in Mouse Liver (GSE46762) [HT Sequencing] Illumina HiSeq 2000 (Mus musculus) (GPL13112) UC Davis Medical Center 2013-05-09 Mus musculus
Mus musculus		 2
(0 x 2) 		2 by_platform
by_series
9 AID stabilizes a stem cell phenotype by removing epigenetic memory of secondary pluripotency network genes (GSE46700) [HT Sequencing] Illumina HiSeq 2000 (Mus musculus) (GPL13112) WEILL MEDICAL COLLEGE OF CORNELL UNIV 2013-05-07 Mus musculus
Mus musculus		 14
(0 x 14) 		8 6 by_platform
by_series
10 Identification of differentially expressed transcripts and pathways one week and six months following implant of left ventricular devices (GSE46665) [HT Sequencing] Illumina HiSeq 2000 (Homo sapiens) (GPL11154) Minnesota Informatics 2013-05-06 Homo sapiens
Homo sapiens		 25
(0 x 25) 		25 by_platform
by_series
11 A Snapshot of the Hepatic Transcriptome: Ad Libitum Alcohol Intake Suppresses Expression of Cholesterol Synthesis Genes in Alcohol-Preferring (P) Rats (GSE46669) [HT Sequencing] Illumina HiScanSQ (Rattus norvegicus) (GPL17116) Purdue University 2013-05-06 Rattus norvegicus
Rattus norvegicus		 12
(0 x 12) 		12 by_platform
by_series
12 [E-MTAB-1309] GENCODE PCR-Seq Batch IX (GSE46637) [HT Sequencing] Illumina HiSeq 2000 (Homo sapiens) (GPL11154) European Bioinformatics Institute 2013-05-03 Homo sapiens
Homo sapiens		 8
(0 x 8) 		1 1 1 2 1 1 1 by_platform
by_series
13 [E-MTAB-1310] GENCODE PCR-Seq Batch X (GSE46638) [HT Sequencing] Illumina HiSeq 2000 (Homo sapiens) (GPL11154) European Bioinformatics Institute 2013-05-03 Homo sapiens
Homo sapiens		 8
(0 x 8) 		1 1 1 2 1 1 1 by_platform
by_series
14 [E-MTAB-1505] GENCODE PCR-Seq Batch IX (GSE46639) [HT Sequencing] Illumina HiSeq 2000 (Homo sapiens) (GPL11154) European Bioinformatics Institute 2013-05-03 Homo sapiens
Homo sapiens		 8
(0 x 8) 		1 1 1 2 1 1 1 by_platform
by_series
15 Buccals are likely to be a more informative surrogate tissue than blood for epigenome-wide association studies [Bisulfite-Seq] (GSE46572) [HT Sequencing] Illumina HiSeq 2000 (Homo sapiens) (GPL11154) QMUL 2013-05-02 Homo sapiens
Homo sapiens		 28
(0 x 28) 		28 by_platform
by_series
16 Comparison of the nucleotide-resolution, genome-wide, 5'-end maps of the transcriptomes of Escherichia coli K12 strain BW25113 and Streptomyces coelicolor A3(2) strain M145 (GSE46507) [HT Sequencing] Illumina HiSeq 2000 (Streptomyces coelicolor A3(2)) (GPL17096) University of Leeds 2013-04-30 Streptomyces coelicolor A3(2)
Streptomyces coelicolor A3(2)		 2
(0 x 2) 		2 by_platform
by_series
17 Comparing proteomics and RISC immunoprecipitations to identify targets of Epstein-Barr viral miRNAs [RISC-IP-seq] (GSE46514) [HT Sequencing] Illumina HiSeq 2000 (Homo sapiens) (GPL11154) University of Wisconsin-Madison 2013-04-30 Homo sapiens
Homo sapiens		 2
(0 x 2) 		2 by_platform
by_series
18 High throughput screening for chemical inducers of stumpy formation in Trypanosoma brucei (GSE46483) [HT Sequencing] Illumina HiSeq 2000 (Trypanosoma brucei brucei) (GPL17088) Centre for Infection Immunity and Evolution 2013-04-29 Trypanosoma brucei brucei
Trypanosoma brucei brucei		 4
(0 x 4) 		4 by_platform
by_series
19 Gene Expression Analysis of Zebrafish Melanocytes, Iridophores, and Retinal Pigmented Epithelium Reveals Indicators of Biological Function and Developmental Origin (GSE46387) [HT Sequencing] Illumina Genome Analyzer IIx (Danio rerio) (GPL15583) Washington University 2013-04-25 Danio rerio
Danio rerio		 2
(0 x 2) 		2 by_platform
by_series
20 Bactrocera dorsalis Gene expression (GSE46310) [HT Sequencing] Illumina Genome Analyzer Iix (Bactrocera dorsalis) (GPL17054) USDA PBARC 2013-04-23 Bactrocera dorsalis
Bactrocera dorsalis		 6
(0 x 6) 		1 5 by_platform
by_series
1   |   2   |   3   |   4   |   5      »      [238]
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