Gene Expression Omnibus (GEO) Overview Version：2013-04-06Japanese page
An overview of the GEO entries broken down by the measurement platforms and the features of the measured samples.
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Data Unit : [ DataSet / Sample / Platform ] Show explanation>> <<Hide explanation
DataSet : Series(GSE) x Platform(GPL). A set of related gene expression data.
Sample : Biological materials.
platform : Methods or instruments used for the gene expression profilings.
The numbers shown in the tabs are the numbers of the data (series, samples or platforms) belonging to the groups.
  Human
(502,421)		   Primates
(4,928)		   Rodents
(181,106)		   Mammals
(16,260)		   Vertebrates
(18,263)		   Invertebrates
(37,338)		   Plants
(91,454)		   Bacteria
(39,082)		   Viruses
(1,266)		   Phages
(101)		   Unclassified
(5,242)		   All
(898,944)		  
  SAGE NlaIII
(1,683)		   SAGE RsaI
(3)		   SAGE Sau3A
(54)		   MPSS
(439)		   GeneChip
(377,145)		   Tiling Array
(21,846)		   cDNA Array
(103,476)		   Oligo Array
(239,584)		   Bead Array
(106,999)		   Protein Array
(5)		   Antibody
(1,152)		   RT-PCR
(3,959)		   HT-Seq
(35,574)		   Other
(6,909)		   All
(898,944)		  
  brain
(2,393)		   blood
(4,818)		   connective
(1,764)		   reproductive
(1,760)		   muscular
(844)		   digestive
(1,192)		   liver
(1,008)		   lung
(949)		   urinary
(585)		   endo/exo-crine
(1,449)		   embryo
(2,545)		   adult aerial structure
(737)		   young aerial structure
(436)		   root
(188)		   meristem/growing tissue
(137)		   flower/sexual organ
(407)		   seed/fruit/grain
(153)		   pooled
(1,694)		   unclassified
(12,515)		   all
(35,574)		  
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Sample ID Title Number of Data Institute Submission date Platform Sample type Species Organ class Reasoning of the classification
Keywords used for the classification are shown with bold font.
1 GSM525466 S. rolfsii_EPSmax13_37h_rep1 21,938 Technische Universität München 2010-03-24 [HT Sequencing] 44K multiplex chip, Agilent (Tailor-made microarray, condensed version) (GPL10247) RNA Athelia rolfsii
Athelia rolfsii		 unclassified source_name:total RNA from S. rolfsii grown in EPSmax13 for 37h, replicate 1 title:S. rolfsii_EPSmax13_37h_rep1 description:Gene expression after 37hr in Exopolysaccharid production inducing media.
2 GSM525467 S. rolfsii_EPSmax13_37h_rep2 21,938 Technische Universität München 2010-03-24 [HT Sequencing] 44K multiplex chip, Agilent (Tailor-made microarray, condensed version) (GPL10247) RNA Athelia rolfsii
Athelia rolfsii		 unclassified source_name:total RNA from S. rolfsii grown in EPSmax13 for 37h, replicate 2 title:S. rolfsii_EPSmax13_37h_rep2 description:Gene expression after 37hr in Exopolysaccharid production inducing media.
3 GSM525468 S. rolfsii_EPSmax13_37h_rep3 21,938 Technische Universität München 2010-03-24 [HT Sequencing] 44K multiplex chip, Agilent (Tailor-made microarray, condensed version) (GPL10247) RNA Athelia rolfsii
Athelia rolfsii		 unclassified source_name:total RNA from S. rolfsii grown in EPSmax13 for 37h, replicate 3 title:S. rolfsii_EPSmax13_37h_rep3 description:Gene expression after 37hr in Exopolysaccharid production inducing media.
4 GSM525469 S. rolfsii_EPSmin17_37h_rep1 21,938 Technische Universität München 2010-03-24 [HT Sequencing] 44K multiplex chip, Agilent (Tailor-made microarray, condensed version) (GPL10247) RNA Athelia rolfsii
Athelia rolfsii		 unclassified source_name:total RNA from S. rolfsii grown in EPSmin17 for 37h, replicate 1 title:S. rolfsii_EPSmin17_37h_rep1 description:Gene expression after 37hr in Exopolysaccharid production non-inducing media.
5 GSM525470 S. rolfsii_EPSmin17_37h_rep3 21,938 Technische Universität München 2010-03-24 [HT Sequencing] 44K multiplex chip, Agilent (Tailor-made microarray, condensed version) (GPL10247) RNA Athelia rolfsii
Athelia rolfsii		 unclassified source_name:total RNA from S. rolfsii grown in EPSmin17 for 37h, replicate 3 title:S. rolfsii_EPSmin17_37h_rep3 description:Gene expression after 37hr in Exopolysaccharid production non-inducing media.
6 GSM387519 Endogenous small RNAs from synthetic allopolyploid, F7 generation, wild type, leaf (F7L) 66,160 University of Chicago 2009-03-29 [HT Sequencing] 454 GS (Arabidopsis arenosa) (GPL9414) SRA Arabidopsis thaliana,Arabidopsis arenosa
Arabidopsis thaliana,Arabidopsis arenosa		 pooled leaf, F7
7 GSM387518 Endogenous small RNAs from synthetic allopolyploid, F1 generation, wild type, flower (F1F) 62,220 University of Chicago 2009-03-29 [HT Sequencing] 454 GS (Arabidopsis arenosa) (GPL9414) SRA Arabidopsis thaliana,Arabidopsis arenosa
Arabidopsis thaliana,Arabidopsis arenosa		 unclassified source_name:flower, F1 title:Endogenous small RNAs from synthetic allopolyploid, F1 generation, wild type, flower (F1F) description:F1 generation of synthetic allopolyploid derived from A. thaliana and A. arenosa 5' adaptor sequence: GCCTCCCTCGCGCCATCAGcgacATCGTAGGCACCTGAAA raw data file(s): EJSVVZQ01.sff, EJSVVZQ02.sff, EJSVYDC01.sff, EJSVYDC02.sff
8 GSM387516 Endogenous small RNAs from Arabidopsis arenoa, wild type, flower (AaF) 59,257 University of Chicago 2009-03-29 [HT Sequencing] 454 GS (Arabidopsis arenosa) (GPL9414) SRA Arabidopsis arenosa
Arabidopsis arenosa		 other flower/sexual organ flower, A. arenosa
9 GSM387520 Endogenous small RNAs from synthetic allopolyploid, F7 generation, wild type, flower (F7F) 49,303 University of Chicago 2009-03-29 [HT Sequencing] 454 GS (Arabidopsis arenosa) (GPL9414) SRA Arabidopsis thaliana,Arabidopsis arenosa
Arabidopsis thaliana,Arabidopsis arenosa		 unclassified source_name:flower, F7 title:Endogenous small RNAs from synthetic allopolyploid, F7 generation, wild type, flower (F7F) description:F7 generation of synthetic allopolyploid derived from A. thaliana and A. arenosa 5'adoptor sequence: GCCTCCCTCGCGCCATCAGgctgATCGTAGGCACCTGAAA raw data file(s): EJSVVZQ01.sff, EJSVVZQ02.sff, EJSVYDC01.sff, EJSVYDC02.sff
10 GSM387515 Endogenous small RNAs from Arabidopsis arenoa, wild type, leaf (AaL) 42,545 University of Chicago 2009-03-29 [HT Sequencing] 454 GS (Arabidopsis arenosa) (GPL9414) SRA Arabidopsis arenosa
Arabidopsis arenosa		 leaf leaf, A. arenosa
11 GSM387517 Endogenous small RNAs from synthetic allopolyploid, F1 generation, wild type, leaf (F1L) 37,401 University of Chicago 2009-03-29 [HT Sequencing] 454 GS (Arabidopsis arenosa) (GPL9414) SRA Arabidopsis thaliana,Arabidopsis arenosa
Arabidopsis thaliana,Arabidopsis arenosa		 pooled leaf, F1
12 GSM387522 Endogenous small RNAs from Arabidopsis suecica, wild type, flower (AsF) 58,571 University of Chicago 2009-03-29 [HT Sequencing] 454 GS (Arabidopsis suecica) (GPL9415) SRA Arabidopsis suecica
Arabidopsis suecica		 other flower/sexual organ flower, A. suecica
13 GSM387521 Endogenous small RNAs from Arabidopsis suecica, wild type, leaf (AsL) 51,823 University of Chicago 2009-03-29 [HT Sequencing] 454 GS (Arabidopsis suecica) (GPL9415) SRA Arabidopsis suecica
Arabidopsis suecica		 leaf leaf, A. suecica
14 GSM387514 Endogenous small RNAs from Arabidopsis thaliana ler, wild type, flower (AtF) 47,748 University of Chicago 2009-03-29 [HT Sequencing] 454 GS (Arabidopsis thaliana) (GPL9386) SRA Arabidopsis thaliana
Arabidopsis thaliana		 other flower/sexual organ flower, A. thaliana
15 GSM387513 Endogenous small RNAs from Arabidopsis thaliana ler, wild type, leaf (AtL) 38,349 University of Chicago 2009-03-29 [HT Sequencing] 454 GS (Arabidopsis thaliana) (GPL9386) SRA Arabidopsis thaliana
Arabidopsis thaliana		 leaf leaf, A. thaliana
16 GSM338558 Endogenous small RNAs from Arabidopsis thaliana col-0, ddm1 mutant, seedlings 32,013 CNRS UMR 8186 - Biologie Moléculaire des Organismes Photosynthétiques 2008-10-31 [HT Sequencing] 454 GS (Arabidopsis thaliana) (GPL9386) SRA Arabidopsis thaliana
Arabidopsis thaliana		 young aerial structure seedlings ddm1 mutant
17 GSM415802 Replicate 3 of FLAG AGO4 associated small RNAs immunopurified from a transgene expressed in Columbia ecotype Arabidopsis 24,311 University of Cambridge 2009-06-10 [HT Sequencing] 454 GS (Arabidopsis thaliana) (GPL9386) SRA Arabidopsis thaliana
Arabidopsis thaliana		 other flower/sexual organ IP mixed stage inflorescence
18 GSM415800 Replicate 1 of FLAG AGO4 associated small RNAs immunopurified from a transgene expressed in Columbia ecotype Arabidopsis 17,817 University of Cambridge 2009-06-10 [HT Sequencing] 454 GS (Arabidopsis thaliana) (GPL9386) SRA Arabidopsis thaliana
Arabidopsis thaliana		 other flower/sexual organ IP mixed stage inflorescence
19 GSM338557 Endogenous small RNAs from Arabidopsis thaliana col-0, wild type, seedlings 15,545 CNRS UMR 8186 - Biologie Moléculaire des Organismes Photosynthétiques 2008-10-31 [HT Sequencing] 454 GS (Arabidopsis thaliana) (GPL9386) SRA Arabidopsis thaliana
Arabidopsis thaliana		 young aerial structure seedlings WT
20 GSM415801 Replicate 2 of FLAG AGO4 associated small RNAs immunopurified from a transgene expressed in Columbia ecotype Arabidopsis 14,020 University of Cambridge 2009-06-10 [HT Sequencing] 454 GS (Arabidopsis thaliana) (GPL9386) SRA Arabidopsis thaliana
Arabidopsis thaliana		 other flower/sexual organ IP mixed stage inflorescence
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