Gene Expression Omnibus (GEO) Overview

DataSet	:	Series(GSE) x Platform(GPL). A set of related gene expression data.
Sample	:	Biological materials.
platform	:	Methods or instruments used for the gene expression profilings.

All
(931,947)

SAGE NlaIII
(1,683)

SAGE RsaI
(3)

SAGE Sau3A
(54)

MPSS
(439)

GeneChip
(391,468)

Tiling Array
(22,222)

cDNA Array
(104,397)

Oligo Array
(247,270)

HT-Seq
(39,106)

endo/exo-crine
(1,524)

embryo
(3,058)

adult aerial structure
(801)

young aerial structure
(470)

root
(230)

meristem/growing tissue
(165)

flower/sexual organ
(425)

seed/fruit/grain
(169)

pooled
(1,931)

unclassified
(13,542)

all
(39,106)

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	Sample ID	Title	Number of Data	Institute	Submission date	Platform	Sample type	Species	Organ class	Reasoning of the classification Keywords used for the classification are shown with bold font.
1	GSM803803	Small RNAs from Zostera marina leaves	973,247	University of Delaware	2011-09-29	[HT Sequencing] Illumina Genome Analyzer II (Zostera marina) (GPL14640)	SRA	Zostera marina	leaf	Leaves
2	GSM803805	Small RNAs from Zostera marina roots and rhizoid	793,904	University of Delaware	2011-09-29	[HT Sequencing] Illumina Genome Analyzer II (Zostera marina) (GPL14640)	SRA	Zostera marina	root	Roots and rhizoid
3	GSM803804	Small RNAs from Zostera marina flowers	629,127	University of Delaware	2011-09-29	[HT Sequencing] Illumina Genome Analyzer II (Zostera marina) (GPL14640)	SRA	Zostera marina	other flower/sexual organ	Flowers
4	GSM816975	Maize_waterlogging_4h	4,136,457	Cold Spring Harbor Labs	2011-10-14	[HT Sequencing] Illumina Genome Analyzer (Zea mays) (GPL9141)	SRA	Zea mays	root	Maize whole root
5	GSM816974	Maize_waterlogging_0h	3,811,363	Cold Spring Harbor Labs	2011-10-14	[HT Sequencing] Illumina Genome Analyzer (Zea mays) (GPL9141)	SRA	Zea mays	root	Maize whole root
6	GSM433621	Small RNAs from maize ears	2,603,191	University of Delaware	2009-07-27	[HT Sequencing] Illumina Genome Analyzer II (Zea mays) (GPL9361)	SRA	Zea mays	unclassified	source_name:Female inflorescence (ears) title:Small RNAs from maize ears description:Total RNA was submitted to Illumina (Hayward, CA, http://www.illumina.com) for small RNA library construction using approaches described in (Lu et al., 2007) with minor modifications. Low molecular weight RNA was gel-sized in the ~18-33 nt range. The small RNA library was sequenced with the Sequencing-by-synthesis (SBS) technology by Illumina. Small RNAs from maize ears
7	GSM433622	Small RNAs from maize tassels	2,463,445	University of Delaware	2009-07-27	[HT Sequencing] Illumina Genome Analyzer II (Zea mays) (GPL9361)	SRA	Zea mays	other flower/sexual organ	Male inflorescence (tassels)
8	GSM381716	smRNASeq_shoot	1,639,984	Yale University	2009-03-18	[HT Sequencing] Illumina Genome Analyzer (Zea mays) (GPL9141)	SRA	Zea mays	pooled	seedling shoots
9	GSM433620	Small RNAs from maize leaves	1,247,806	University of Delaware	2009-07-27	[HT Sequencing] Illumina Genome Analyzer II (Zea mays) (GPL9361)	SRA	Zea mays	leaf	Leaves
10	GSM381738	smRNASeq_root	709,440	Yale University	2009-03-18	[HT Sequencing] Illumina Genome Analyzer (Zea mays) (GPL9141)	SRA	Zea mays	root	seedling roots
11	GSM661298	s5_ago104 Ovaries	404,542	IRD	2011-01-25	[HT Sequencing] Illumina Genome Analyzer (Zea mays) (GPL9141)	SRA	Zea mays	unclassified	source_name:ago104_KO title:s5_ago104 Ovaries
12	GSM661297	s3_WildType Ovaries	386,281	IRD	2011-01-25	[HT Sequencing] Illumina Genome Analyzer (Zea mays) (GPL9141)	SRA	Zea mays	unclassified	source_name:wild-type title:s3_WildType Ovaries
13	GSM418173	BM_14day_seedling	26,394	Iowa State University	2009-06-17	[HT Sequencing] Illumina Genome Analyzer II (Zea mays) (GPL9361)	SRA	Zea mays	young aerial structure	above_ground_seedling
14	GSM418174	MB_14day_seedling	26,394	Iowa State University	2009-06-17	[HT Sequencing] Illumina Genome Analyzer II (Zea mays) (GPL9361)	SRA	Zea mays	young aerial structure	above_ground_seedling
15	GSM420173	mop1/mop1-SAM	24,743	Iowa State University	2009-06-23	[HT Sequencing] Illumina Genome Analyzer (Zea mays) (GPL9141)	SRA	Zea mays	meristem/growing tissue	Shoot apical meristem
16	GSM420174	Mop1/mop1-SAM	24,743	Iowa State University	2009-06-23	[HT Sequencing] Illumina Genome Analyzer (Zea mays) (GPL9141)	SRA	Zea mays	meristem/growing tissue	Shoot apical meristem
17	GSM422828	Maize-SAM-L1	21,602	Iowa State University	2009-06-27	[HT Sequencing] Illumina Genome Analyzer (Zea mays) (GPL9141)	SRA	Zea mays	meristem/growing tissue	Shoot apical meristem
18	GSM422829	Maize-SAM-L2	21,602	Iowa State University	2009-06-27	[HT Sequencing] Illumina Genome Analyzer (Zea mays) (GPL9141)	SRA	Zea mays	meristem/growing tissue	Shoot apical meristem
19	GSM1005506	H-CK	0	Huangzhong agricultural university	2012-09-18	[HT Sequencing] Illumina Genome Analyzer (Zea mays) (GPL9141)	SRA	Zea mays	root	H_root_ck
20	GSM1005507	H-P1	0	Huangzhong agricultural university	2012-09-18	[HT Sequencing] Illumina Genome Analyzer (Zea mays) (GPL9141)	SRA	Zea mays	root	H_root_P1

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