Gene Expression Omnibus (GEO) Overview Version：2013-04-06Japanese page
An overview of the GEO entries broken down by the measurement platforms and the features of the measured samples.
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Data Unit : [ DataSet / Sample / Platform ] Show explanation>> <<Hide explanation
DataSet : Series(GSE) x Platform(GPL). A set of related gene expression data.
Sample : Biological materials.
platform : Methods or instruments used for the gene expression profilings.
The numbers shown in the tabs are the numbers of the data (series, samples or platforms) belonging to the groups.
  Human
(16,283)		   Primates
(80)		   Rodents
(6,896)		   Mammals
(298)		   Vertebrates
(469)		   Invertebrates
(517)		   Plants
(5,385)		   Bacteria
(1,328)		   Viruses
(9)		   Phages
(0)		   Unclassified
(100)		   All
(31,365)		  
  SAGE NlaIII
(28)		   SAGE RsaI
(3)		   SAGE Sau3A
(0)		   MPSS
(79)		   GeneChip
(13,710)		   Tiling Array
(988)		   cDNA Array
(2,586)		   Oligo Array
(13,249)		   Bead Array
(523)		   Protein Array
(0)		   Antibody
(0)		   RT-PCR
(24)		   HT-Seq
(160)		   Other
(15)		   All
(31,365)		  
  brain
(7)		   blood
(29)		   connective
(9)		   reproductive
(2)		   muscular
(0)		   digestive
(0)		   liver
(2)		   lung
(0)		   urinary
(0)		   endo/exo-crine
(0)		   embryo
(15)		   adult aerial structure
(11)		   young aerial structure
(9)		   root
(0)		   meristem/growing tissue
(0)		   flower/sexual organ
(8)		   seed/fruit/grain
(4)		   pooled
(3)		   unclassified
(61)		   all
(160)		  
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Sample ID Title Number of Data Institute Submission date Platform Sample type Species Organ class Reasoning of the classification
Keywords used for the classification are shown with bold font.
1 GSM782668 RNA-seq of IL-10 treated macrophages 0 Immunology Frontier Research Center 2011-08-19 [HT Sequencing] Illumina HiSeq 2000 (Mus musculus) (GPL13112) SRA Mus musculus
Mus musculus		 peripheral blood RNA-seq of IL-10 treated macrophages
2 GSM782669 RNA-seq of Untreated macrophages 0 Immunology Frontier Research Center 2011-08-19 [HT Sequencing] Illumina HiSeq 2000 (Mus musculus) (GPL13112) SRA Mus musculus
Mus musculus		 peripheral blood RNA-seq of Untreated macrophages
3 GSM850875 RNA-seq of mock (untreated) CD4+ T cells 0 Immunology Frontier Research Center 2011-12-19 [HT Sequencing] Illumina HiSeq 2000 (Mus musculus) (GPL13112) SRA Mus musculus
Mus musculus		 lymphnode CD4+ T cells_untreated
4 GSM850876 RNA-seq of anti-CD3/anti-CD28 treated CD4+ T cells_4 hours 0 Immunology Frontier Research Center 2011-12-19 [HT Sequencing] Illumina HiSeq 2000 (Mus musculus) (GPL13112) SRA Mus musculus
Mus musculus		 lymphnode CD4+ T cells_anti-CD3/anti-CD28 treated_4hr
5 GSM773480 control_Ab_ChIPSeq_Th2 0 Chiba University 2011-08-04 [HT Sequencing] Illumina Genome Analyzer IIx (Mus musculus) (GPL11002) SRA Mus musculus
Mus musculus		 thymus control_Ab_ChIPSeq_Th2
6 GSM773482 GATA3_ChIPSeq_Th2 0 Chiba University 2011-08-04 [HT Sequencing] Illumina Genome Analyzer IIx (Mus musculus) (GPL11002) SRA Mus musculus
Mus musculus		 thymus GATA3_ChIPSeq_Th2
7 GSM773484 input DNA_Th2_1 0 Chiba University 2011-08-04 [HT Sequencing] Illumina Genome Analyzer IIx (Mus musculus) (GPL11002) SRA Mus musculus
Mus musculus		 thymus input DNA_Th2_1
8 GSM773486 H3K27me3_ChIPSeq_Th2 0 Chiba University 2011-08-04 [HT Sequencing] Illumina Genome Analyzer IIx (Mus musculus) (GPL11002) SRA Mus musculus
Mus musculus		 thymus H3K27me3_ChIPSeq_Th2
9 GSM773488 input DNA_Th2_2 0 Chiba University 2011-08-04 [HT Sequencing] Illumina Genome Analyzer IIx (Mus musculus) (GPL11002) SRA Mus musculus
Mus musculus		 thymus input DNA_Th2_2
10 GSM773490 H3K9ac_ChIPSeq_Th2 0 Chiba University 2011-08-04 [HT Sequencing] Illumina Genome Analyzer IIx (Mus musculus) (GPL11002) SRA Mus musculus
Mus musculus		 thymus H3K9ac_ChIPSeq_Th2
11 GSM773492 H3K4me3_ChIPSeq_Th2 0 Chiba University 2011-08-04 [HT Sequencing] Illumina Genome Analyzer IIx (Mus musculus) (GPL11002) SRA Mus musculus
Mus musculus		 thymus H3K4me3_ChIPSeq_Th2
12 GSM782663 PEC_Untreated_STAT3_ChIPseq 0 Immunology Frontier Research Center 2011-08-19 [HT Sequencing] Illumina Genome Analyzer II (Mus musculus) (GPL9250) SRA Mus musculus
Mus musculus		 peripheral blood ChIP in untreated macrophages against STAT3
13 GSM782664 PEC_IL10-treated_STAT3_ChIPseq 0 Immunology Frontier Research Center 2011-08-19 [HT Sequencing] Illumina Genome Analyzer II (Mus musculus) (GPL9250) SRA Mus musculus
Mus musculus		 peripheral blood ChIP in IL-10 treated (4 hours) macrophages against STAT3
14 GSM782665 PEC_Untreated_Input_ChIPseq 0 Immunology Frontier Research Center 2011-08-19 [HT Sequencing] Illumina Genome Analyzer II (Mus musculus) (GPL9250) SRA Mus musculus
Mus musculus		 peripheral blood Input chromatin from untreated macrophages
15 GSM782666 PEC_IL10-treated_Input_ChIPseq 0 Immunology Frontier Research Center 2011-08-19 [HT Sequencing] Illumina Genome Analyzer II (Mus musculus) (GPL9250) SRA Mus musculus
Mus musculus		 peripheral blood Input chromatin from IL-10 treated (4 hours) macrophages
16 GSM945520 HUVEC H3K27Ac DMSO 24hr hypoxia 0 LSBM, RCAST 2012-06-07 [HT Sequencing] Illumina Genome Analyzer (Homo sapiens) (GPL9052) SRA Homo sapiens
Homo sapiens		 vein HUVEC H3K27Ac DMSO 24hr hypoxia
17 GSM945521 HUVEC H3K27Ac DMSO 24hr normoxia 0 LSBM, RCAST 2012-06-07 [HT Sequencing] Illumina Genome Analyzer (Homo sapiens) (GPL9052) SRA Homo sapiens
Homo sapiens		 vein HUVEC H3K27Ac DMSO 24hr normoxia
18 GSM697356 THP1_hCAGE_low_quantity_1000ng_rep1 0 RIKEN 2011-03-24 [HT Sequencing] Helicos Heliscope (Homo sapiens) (GPL13978) SRA Homo sapiens
Homo sapiens		 peripheral blood THP-1 cell line
19 GSM697357 THP1_hCAGE_low_quantity_1000ng_rep2 0 RIKEN 2011-03-24 [HT Sequencing] Helicos Heliscope (Homo sapiens) (GPL13978) SRA Homo sapiens
Homo sapiens		 peripheral blood THP-1 cell line
20 GSM697358 THP1_hCAGE_low_quantity_500ng_rep1 0 RIKEN 2011-03-24 [HT Sequencing] Helicos Heliscope (Homo sapiens) (GPL13978) SRA Homo sapiens
Homo sapiens		 peripheral blood THP-1 cell line
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