Gene Expression Omnibus (GEO) Overview Version´╝Ü2014-04-12Japanese page
An overview of the GEO entries broken down by the measurement platforms and the features of the measured samples.
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Data Unit : [ DataSet / Sample / Platform ] Show explanation>> <<Hide explanation
DataSet : Series(GSE) x Platform(GPL). A set of related gene expression data.
Sample : Biological materials.
platform : Methods or instruments used for the gene expression profilings.
The numbers shown in the tabs are the numbers of the data (series, samples or platforms) belonging to the groups.
  Human
(615,734)
  Primates
(5,814)
  Rodents
(225,055)
  Mammals
(20,968)
  Vertebrates
(22,581)
  Invertebrates
(46,584)
  Plants
(107,706)
  Bacteria
(45,091)
  Viruses
(1,432)
  Phages
(112)
  Unclassified
(6,986)
  All
(1,101,311)
 
  SAGE NlaIII
(1,697)
  SAGE RsaI
(3)
  SAGE Sau3A
(54)
  MPSS
(507)
  GeneChip
(441,758)
  Tiling Array
(24,730)
  cDNA Array
(109,124)
  Oligo Array
(288,250)
  Bead Array
(148,432)
  Protein Array
(5)
  Antibody
(1,287)
  RT-PCR
(6,509)
  HT-Seq
(64,850)
  Other
(13,899)
  All
(1,101,311)
 
  brain
(3,836)
  blood
(8,820)
  connective
(3,686)
  reproductive
(2,705)
  muscular
(1,949)
  digestive
(2,864)
  liver
(1,754)
  lung
(1,526)
  urinary
(1,086)
  endo/exo-crine
(2,518)
  embryo
(5,613)
  adult aerial structure
(1,222)
  young aerial structure
(694)
  root
(369)
  meristem/growing tissue
(201)
  flower/sexual organ
(596)
  seed/fruit/grain
(267)
  pooled
(2,869)
  unclassified
(22,275)
  all
(64,850)
 
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Sample ID Title Number of Data Institute Submission date Platform Sample type Species Organ class Reasoning of the classification
Keywords used for the classification are shown with bold font.
1 GSM541796 undifferentiated human embryonic stem cells 0 Fred Hutchinson Cancer Research Center 2010-05-06 [HT Sequencing] 454 GS (Homo sapiens) (GPL10400) SRA Homo sapiens
Homo sapiens
embryo undifferentiated human embryonic stem cells
2 GSM541797 differentiated human embryonic stem cells 0 Fred Hutchinson Cancer Research Center 2010-05-06 [HT Sequencing] 454 GS (Homo sapiens) (GPL10400) SRA Homo sapiens
Homo sapiens
embryo differentiated human embryonic stem cells
3 GSM544241 ES_day4, 18-24mer 21,002 MGH 2010-05-18 [HT Sequencing] 454 GS (Mus musculus) (GPL10425) SRA Mus musculus
Mus musculus
embryo ES cells
4 GSM544242 ES_day4, 25-45mer 16,938 MGH 2010-05-18 [HT Sequencing] 454 GS (Mus musculus) (GPL10425) SRA Mus musculus
Mus musculus
embryo ES cells
5 GSM446651 EMB_3UTR_polyAcapture 527,901 NYU Center for Genomics and Systems Biology 2009-08-31 [HT Sequencing] 454 GS FLX (Caenorhabditis elegans) (GPL9085) SRA Caenorhabditis elegans
Caenorhabditis elegans
embryo Sequences from embryo, forward and reverse read
6 GSM443959 3UTR_EMB_L1toL4_Adult_polyAcapture, embryo 139,252 NYU Center for Genomics and Systems Biology 2009-08-24 [HT Sequencing] 454 GS FLX (Caenorhabditis elegans) (GPL9085) SRA Caenorhabditis elegans
Caenorhabditis elegans
embryo 3UTR_EMB_L1toL4_Adult_polyAcapture, embryo
7 GSM443960 3UTR_EMB_L1toL4_Adult_polyAcapture, L1 139,252 NYU Center for Genomics and Systems Biology 2009-08-24 [HT Sequencing] 454 GS FLX (Caenorhabditis elegans) (GPL9085) SRA Caenorhabditis elegans
Caenorhabditis elegans
embryo This run comprised of mixed barcoded sequences from embryo, L1 to L4, and adult hermaphrodite.
8 GSM443961 3UTR_EMB_L1toL4_Adult_polyAcapture, L2 139,252 NYU Center for Genomics and Systems Biology 2009-08-24 [HT Sequencing] 454 GS FLX (Caenorhabditis elegans) (GPL9085) SRA Caenorhabditis elegans
Caenorhabditis elegans
embryo This run comprised of mixed barcoded sequences from embryo, L1 to L4, and adult hermaphrodite.
9 GSM443962 3UTR_EMB_L1toL4_Adult_polyAcapture, L3 139,252 NYU Center for Genomics and Systems Biology 2009-08-24 [HT Sequencing] 454 GS FLX (Caenorhabditis elegans) (GPL9085) SRA Caenorhabditis elegans
Caenorhabditis elegans
embryo This run comprised of mixed barcoded sequences from embryo, L1 to L4, and adult hermaphrodite.
10 GSM443963 3UTR_EMB_L1toL4_Adult_polyAcapture, L4 139,252 NYU Center for Genomics and Systems Biology 2009-08-24 [HT Sequencing] 454 GS FLX (Caenorhabditis elegans) (GPL9085) SRA Caenorhabditis elegans
Caenorhabditis elegans
embryo This run comprised of mixed barcoded sequences from embryo, L1 to L4, and adult hermaphrodite.
11 GSM443964 3UTR_EMB_L1toL4_Adult_polyAcapture, young adult hemaprhodite 139,252 NYU Center for Genomics and Systems Biology 2009-08-24 [HT Sequencing] 454 GS FLX (Caenorhabditis elegans) (GPL9085) SRA Caenorhabditis elegans
Caenorhabditis elegans
embryo This run comprised of mixed barcoded sequences from embryo, L1 to L4, and adult hermaphrodite.
12 GSM517436 hESC_B_l1 (454) 0 Yale University 2010-03-03 [HT Sequencing] 454 GS FLX (Homo sapiens) (GPL9186) SRA Homo sapiens
Homo sapiens
embryo Embryonic stem cells
13 GSM758323 h9ESC long 1 0 Academia Sinica 2011-07-11 [HT Sequencing] 454 GS FLX (Homo sapiens) (GPL9186) SRA Homo sapiens
Homo sapiens
embryo Embryonic stem cells
14 GSM758324 h9ESC long 2 0 Academia Sinica 2011-07-11 [HT Sequencing] 454 GS FLX (Homo sapiens) (GPL9186) SRA Homo sapiens
Homo sapiens
embryo Embryonic stem cells
15 GSM951483 H1 ES Cells 0 CRG 2012-06-22 [HT Sequencing] 454 GS FLX (Homo sapiens) (GPL9186) SRA Homo sapiens
Homo sapiens
embryo embryonic stem cells
16 GSM641951 PiggyBac integrations in IB10 ES cells 0 Netherlands Cancer Institute 2010-12-17 [HT Sequencing] 454 GS FLX (Mus musculus) (GPL9273) SRA Mus musculus
Mus musculus
embryo Mouse ES cell line
17 GSM314559 ESC dgcr8 (454) 37,727 UCSF 2008-08-21 [HT Sequencing] 454 small RNA sequencing (GPL7196) RNA Mus musculus
Mus musculus
embryo dgcr8(-) ES cells
18 GSM314558 ESC wild type (454) 22,347 UCSF 2008-08-21 [HT Sequencing] 454 small RNA sequencing (GPL7196) RNA Mus musculus
Mus musculus
embryo wt ES cells
19 GSM1045813 Prdm14WT_H3K27me3 0 Kyoto University, Graduate school of medicine 2012-11-29 [HT Sequencing] AB 5500xl Genetic Analyzer (Mus musculus) (GPL15907) SRA Mus musculus
Mus musculus
embryo ES cells
20 GSM1045814 Prdm14KO_H3K27me3 0 Kyoto University, Graduate school of medicine 2012-11-29 [HT Sequencing] AB 5500xl Genetic Analyzer (Mus musculus) (GPL15907) SRA Mus musculus
Mus musculus
embryo ES cells
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