Gene Expression Omnibus (GEO) Overview Version´╝Ü2014-04-12Japanese page
An overview of the GEO entries broken down by the measurement platforms and the features of the measured samples.
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Data Unit : [ DataSet / Sample / Platform ] Show explanation>> <<Hide explanation
DataSet : Series(GSE) x Platform(GPL). A set of related gene expression data.
Sample : Biological materials.
platform : Methods or instruments used for the gene expression profilings.
The numbers shown in the tabs are the numbers of the data (series, samples or platforms) belonging to the groups.
  Human
(615,734)
  Primates
(5,814)
  Rodents
(225,055)
  Mammals
(20,968)
  Vertebrates
(22,581)
  Invertebrates
(46,584)
  Plants
(107,706)
  Bacteria
(45,091)
  Viruses
(1,432)
  Phages
(112)
  Unclassified
(6,986)
  All
(1,101,311)
 
  SAGE NlaIII
(1,697)
  SAGE RsaI
(3)
  SAGE Sau3A
(54)
  MPSS
(507)
  GeneChip
(441,758)
  Tiling Array
(24,730)
  cDNA Array
(109,124)
  Oligo Array
(288,250)
  Bead Array
(148,432)
  Protein Array
(5)
  Antibody
(1,287)
  RT-PCR
(6,509)
  HT-Seq
(64,850)
  Other
(13,899)
  All
(1,101,311)
 
  brain
(3,836)
  blood
(8,820)
  connective
(3,686)
  reproductive
(2,705)
  muscular
(1,949)
  digestive
(2,864)
  liver
(1,754)
  lung
(1,526)
  urinary
(1,086)
  endo/exo-crine
(2,518)
  embryo
(5,613)
  adult aerial structure
(1,222)
  young aerial structure
(694)
  root
(369)
  meristem/growing tissue
(201)
  flower/sexual organ
(596)
  seed/fruit/grain
(267)
  pooled
(2,869)
  unclassified
(22,275)
  all
(64,850)
 
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Sample ID Title Number of Data Institute Submission date Platform Sample type Species Organ class Reasoning of the classification
Keywords used for the classification are shown with bold font.
1 GSM951481 HepG2 0 CRG 2012-06-22 [HT Sequencing] 454 GS FLX (Homo sapiens) (GPL9186) SRA Homo sapiens
Homo sapiens
liver/hepato Liver carcinoma cells
2 GSM776676 Sleeping Beauty induced lymphoma (Shear-splink sample101) 0 Netherlands Cancer Institute 2011-08-10 [HT Sequencing] 454 GS FLX (Mus musculus) (GPL9273) SRA Mus musculus
Mus musculus
liver/hepato LEUKAEMIA LIVER
3 GSM776693 Sleeping Beauty induced lymphoma (Shear-splink sample118) 0 Netherlands Cancer Institute 2011-08-10 [HT Sequencing] 454 GS FLX (Mus musculus) (GPL9273) SRA Mus musculus
Mus musculus
liver/hepato LYMPHOMA LIVER
4 GSM776700 Sleeping Beauty induced lymphoma (Shear-splink sample125) 0 Netherlands Cancer Institute 2011-08-10 [HT Sequencing] 454 GS FLX (Mus musculus) (GPL9273) SRA Mus musculus
Mus musculus
liver/hepato LYMPHOMA LIVER
5 GSM776803 Sleeping Beauty induced lymphoma (BfaI sample 101) 0 Netherlands Cancer Institute 2011-08-10 [HT Sequencing] 454 GS FLX (Mus musculus) (GPL9273) SRA Mus musculus
Mus musculus
liver/hepato LEUKAEMIA LIVER
6 GSM776820 Sleeping Beauty induced lymphoma (BfaI sample 118) 0 Netherlands Cancer Institute 2011-08-10 [HT Sequencing] 454 GS FLX (Mus musculus) (GPL9273) SRA Mus musculus
Mus musculus
liver/hepato LYMPHOMA LIVER
7 GSM776827 Sleeping Beauty induced lymphoma (BfaI sample 125) 0 Netherlands Cancer Institute 2011-08-10 [HT Sequencing] 454 GS FLX (Mus musculus) (GPL9273) SRA Mus musculus
Mus musculus
liver/hepato LYMPHOMA LIVER
8 GSM776930 Sleeping Beauty induced lymphoma (NlaIII sample 101) 0 Netherlands Cancer Institute 2011-08-10 [HT Sequencing] 454 GS FLX (Mus musculus) (GPL9273) SRA Mus musculus
Mus musculus
liver/hepato LEUKAEMIA LIVER
9 GSM776947 Sleeping Beauty induced lymphoma (NlaIII sample 118) 0 Netherlands Cancer Institute 2011-08-10 [HT Sequencing] 454 GS FLX (Mus musculus) (GPL9273) SRA Mus musculus
Mus musculus
liver/hepato LYMPHOMA LIVER
10 GSM776954 Sleeping Beauty induced lymphoma (NlaIII sample 125) 0 Netherlands Cancer Institute 2011-08-10 [HT Sequencing] 454 GS FLX (Mus musculus) (GPL9273) SRA Mus musculus
Mus musculus
liver/hepato LYMPHOMA LIVER
11 GSM1000554 M-D-_1 0 National University of Singapore 2012-09-10 [HT Sequencing] AB SOLiD 3 Plus System (Danio rerio) (GPL16034) SRA Danio rerio
Danio rerio
liver/hepato control liver, M-D-
12 GSM1000555 M-D-_2 0 National University of Singapore 2012-09-10 [HT Sequencing] AB SOLiD 3 Plus System (Danio rerio) (GPL16034) SRA Danio rerio
Danio rerio
liver/hepato control liver, M-D-
13 GSM1000556 M+D-_1 0 National University of Singapore 2012-09-10 [HT Sequencing] AB SOLiD 3 Plus System (Danio rerio) (GPL16034) SRA Danio rerio
Danio rerio
liver/hepato control liver, M+D-
14 GSM1000557 M+D-_2 0 National University of Singapore 2012-09-10 [HT Sequencing] AB SOLiD 3 Plus System (Danio rerio) (GPL16034) SRA Danio rerio
Danio rerio
liver/hepato control liver, M+D-
15 GSM1000558 M-D+_1 0 National University of Singapore 2012-09-10 [HT Sequencing] AB SOLiD 3 Plus System (Danio rerio) (GPL16034) SRA Danio rerio
Danio rerio
liver/hepato control liver, M-D+
16 GSM1000559 M-D+_2 0 National University of Singapore 2012-09-10 [HT Sequencing] AB SOLiD 3 Plus System (Danio rerio) (GPL16034) SRA Danio rerio
Danio rerio
liver/hepato control liver, M-D+
17 GSM1000560 M+D+_1 0 National University of Singapore 2012-09-10 [HT Sequencing] AB SOLiD 3 Plus System (Danio rerio) (GPL16034) SRA Danio rerio
Danio rerio
liver/hepato liver tumor, M+D+
18 GSM1000561 M+D+_2 0 National University of Singapore 2012-09-10 [HT Sequencing] AB SOLiD 3 Plus System (Danio rerio) (GPL16034) SRA Danio rerio
Danio rerio
liver/hepato liver tumor, M+D+
19 GSM1177836 Arsenic-treated zebrafish liver 0 National University of Singapore 2013-06-28 [HT Sequencing] AB SOLiD 3 Plus System (Danio rerio) (GPL16034) SRA Danio rerio
Danio rerio
liver/hepato liver, arsenic
20 GSM1177837 H2O-treated zebrafish liver 0 National University of Singapore 2013-06-28 [HT Sequencing] AB SOLiD 3 Plus System (Danio rerio) (GPL16034) SRA Danio rerio
Danio rerio
liver/hepato liver, control
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