Gene Expression Omnibus (GEO) Overview Version´╝Ü2014-04-12Japanese page
An overview of the GEO entries broken down by the measurement platforms and the features of the measured samples.
RSS
Data Unit : [ DataSet / Sample / Platform ] Show explanation>> <<Hide explanation
DataSet : Series(GSE) x Platform(GPL). A set of related gene expression data.
Sample : Biological materials.
platform : Methods or instruments used for the gene expression profilings.
The numbers shown in the tabs are the numbers of the data (series, samples or platforms) belonging to the groups.
  Human
(21,397)
  Primates
(80)
  Rodents
(9,352)
  Mammals
(342)
  Vertebrates
(534)
  Invertebrates
(726)
  Plants
(6,411)
  Bacteria
(1,450)
  Viruses
(9)
  Phages
(0)
  Unclassified
(109)
  All
(40,410)
 
  SAGE NlaIII
(28)
  SAGE RsaI
(3)
  SAGE Sau3A
(0)
  MPSS
(129)
  GeneChip
(16,174)
  Tiling Array
(1,407)
  cDNA Array
(3,164)
  Oligo Array
(18,094)
  Bead Array
(887)
  Protein Array
(0)
  Antibody
(0)
  RT-PCR
(60)
  HT-Seq
(436)
  Other
(15)
  All
(40,410)
 
  brain
(20)
  blood
(41)
  connective
(24)
  reproductive
(6)
  muscular
(0)
  digestive
(0)
  liver
(12)
  lung
(9)
  urinary
(10)
  endo/exo-crine
(0)
  embryo
(45)
  adult aerial structure
(11)
  young aerial structure
(9)
  root
(0)
  meristem/growing tissue
(0)
  flower/sexual organ
(12)
  seed/fruit/grain
(4)
  pooled
(29)
  unclassified
(204)
  all
(436)
 
Sample ID Title Number of Data Institute Submission date Platform Sample type Species Organ class Reasoning of the classification
Keywords used for the classification are shown with bold font.
1 GSM916989 No.11 Liver_SAGE 0 Iwate Biotechnology Reserch Center 2012-04-18 [HT Sequencing] Illumina Genome Analyzer IIx (Mus musculus) (GPL11002) SRA Mus musculus
Mus musculus
liver/hepato liver_Normal diet + 1% WEPAK
2 GSM916990 No.12 Liver_SAGE 0 Iwate Biotechnology Reserch Center 2012-04-18 [HT Sequencing] Illumina Genome Analyzer IIx (Mus musculus) (GPL11002) SRA Mus musculus
Mus musculus
liver/hepato liver_Normal diet + 1% WEPAK
3 GSM916991 No.15 Liver_SAGE 0 Iwate Biotechnology Reserch Center 2012-04-18 [HT Sequencing] Illumina Genome Analyzer IIx (Mus musculus) (GPL11002) SRA Mus musculus
Mus musculus
liver/hepato liver_Normal diet + 1% WEPAK
4 GSM916992 No.20 Liver_SAGE 0 Iwate Biotechnology Reserch Center 2012-04-18 [HT Sequencing] Illumina Genome Analyzer IIx (Mus musculus) (GPL11002) SRA Mus musculus
Mus musculus
liver/hepato liver_Normal diet + 1% WEPAK
5 GSM1008241 HepG2 Ago2IP NT 0 Tokyo Medical & Dental University 2012-09-21 [HT Sequencing] Illumina Genome Analyzer IIx (Homo sapiens) (GPL10999) SRA Homo sapiens
Homo sapiens
liver/hepato HepG2,NT,Ago2-IP
6 GSM1008242 HepG2 Ago2IP miR-195 0 Tokyo Medical & Dental University 2012-09-21 [HT Sequencing] Illumina Genome Analyzer IIx (Homo sapiens) (GPL10999) SRA Homo sapiens
Homo sapiens
liver/hepato HepG2,miR-195,24h, Ago2-IP
7 GSM1008243 HepG2 Ago2IP miR-497 0 Tokyo Medical & Dental University 2012-09-21 [HT Sequencing] Illumina Genome Analyzer IIx (Homo sapiens) (GPL10999) SRA Homo sapiens
Homo sapiens
liver/hepato HepG2,miR-497,24h, Ago2-IP
8 GSM1008244 HepG2 total RNA NT 0 Tokyo Medical & Dental University 2012-09-21 [HT Sequencing] Illumina Genome Analyzer IIx (Homo sapiens) (GPL10999) SRA Homo sapiens
Homo sapiens
liver/hepato HepG2,NT,totalRNA
9 GSM1008245 HepG2 total RNA miR-195 0 Tokyo Medical & Dental University 2012-09-21 [HT Sequencing] Illumina Genome Analyzer IIx (Homo sapiens) (GPL10999) SRA Homo sapiens
Homo sapiens
liver/hepato HepG2,miR-195,24h, totalRNA
10 GSM1008246 HepG2 total RNA miR-497 0 Tokyo Medical & Dental University 2012-09-21 [HT Sequencing] Illumina Genome Analyzer IIx (Homo sapiens) (GPL10999) SRA Homo sapiens
Homo sapiens
liver/hepato HepG2,miR-497,24h, totalRNA
11 GSM714326 HepG2_no stimulation_HNF4A_ChIPSeq 0 University of Tokyo 2011-04-25 [HT Sequencing] Illumina Genome Analyzer II (Homo sapiens) (GPL9115) SRA Homo sapiens
Homo sapiens
liver/hepato HepG2 cells, without TGF-beta3 stimulation
12 GSM714327 HepG2_TGF-beta stimulation_HNF4A_ChIPSeq 0 University of Tokyo 2011-04-25 [HT Sequencing] Illumina Genome Analyzer II (Homo sapiens) (GPL9115) SRA Homo sapiens
Homo sapiens
liver/hepato HepG2 cells, stimulated with TGF-beta3 for 1.5 h