Gene Expression Omnibus (GEO) Overview
Version：2013-04-06
Japanese page
An overview of the GEO entries broken down by the measurement platforms and the features of the measured samples.
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Data Unit : [
DataSet
/
Sample
/
Platform
]
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DataSet
:
Series(GSE) x Platform(GPL). A set of related gene expression data.
Sample
:
Biological materials.
platform
:
Methods or instruments used for the gene expression profilings.
The numbers shown in the tabs are the numbers of the data (series, samples or platforms) belonging to the groups.
Human
(
16,283
)
Primates
(
80
)
Rodents
(
6,896
)
Mammals
(
298
)
Vertebrates
(
469
)
Invertebrates
(
517
)
Plants
(
5,385
)
Bacteria
(
1,328
)
Viruses
(
9
)
Phages
(
0
)
Unclassified
(
100
)
All
(
31,365
)
SAGE NlaIII
(
28
)
SAGE RsaI
(
3
)
SAGE Sau3A
(
0
)
MPSS
(
79
)
GeneChip
(
13,710
)
Tiling Array
(
988
)
cDNA Array
(
2,586
)
Oligo Array
(
13,249
)
Bead Array
(
523
)
Protein Array
(
0
)
Antibody
(
0
)
RT-PCR
(
24
)
HT-Seq
(
160
)
Other
(
15
)
All
(
31,365
)
brain
(
7
)
blood
(
29
)
connective
(
9
)
reproductive
(
2
)
muscular
(
0
)
digestive
(
0
)
liver
(
2
)
lung
(
0
)
urinary
(
0
)
endo/exo-crine
(
0
)
embryo
(
15
)
adult aerial structure
(
11
)
young aerial structure
(
9
)
root
(
0
)
meristem/growing tissue
(
0
)
flower/sexual organ
(
8
)
seed/fruit/grain
(
4
)
pooled
(
3
)
unclassified
(
61
)
all
(
160
)
Sample ID
Title
Number of Data
Institute
Submission date
Platform
Sample type
Species
Organ class
Reasoning of the classification
Keywords used for the classification are shown with bold font.
1
GSM714326
HepG2_no stimulation_HNF4A_ChIPSeq
0
University of Tokyo
2011-04-25
[HT Sequencing] Illumina Genome Analyzer II (Homo sapiens) (
GPL9115
)
SRA
Homo sapiens
liver/hepato
HepG2
cells, without TGF-beta3 stimulation
2
GSM714327
HepG2_TGF-beta stimulation_HNF4A_ChIPSeq
0
University of Tokyo
2011-04-25
[HT Sequencing] Illumina Genome Analyzer II (Homo sapiens) (
GPL9115
)
SRA
Homo sapiens
liver/hepato
HepG2
cells, stimulated with TGF-beta3 for 1.5 h
