Gene Expression Omnibus (GEO) Overview Version：2013-04-06Japanese page
An overview of the GEO entries broken down by the measurement platforms and the features of the measured samples.
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Data Unit : [ DataSet / Sample / Platform ] Show explanation>> <<Hide explanation
DataSet : Series(GSE) x Platform(GPL). A set of related gene expression data.
Sample : Biological materials.
platform : Methods or instruments used for the gene expression profilings.
The numbers shown in the tabs are the numbers of the data (series, samples or platforms) belonging to the groups.
  Human
(502,421)		   Primates
(4,928)		   Rodents
(181,106)		   Mammals
(16,260)		   Vertebrates
(18,263)		   Invertebrates
(37,338)		   Plants
(91,454)		   Bacteria
(39,082)		   Viruses
(1,266)		   Phages
(101)		   Unclassified
(5,242)		   All
(898,944)		  
  SAGE NlaIII
(1,683)		   SAGE RsaI
(3)		   SAGE Sau3A
(54)		   MPSS
(439)		   GeneChip
(377,145)		   Tiling Array
(21,846)		   cDNA Array
(103,476)		   Oligo Array
(239,584)		   Bead Array
(106,999)		   Protein Array
(5)		   Antibody
(1,152)		   RT-PCR
(3,959)		   HT-Seq
(35,574)		   Other
(6,909)		   All
(898,944)		  
  brain
(2,393)		   blood
(4,818)		   connective
(1,764)		   reproductive
(1,760)		   muscular
(844)		   digestive
(1,192)		   liver
(1,008)		   lung
(949)		   urinary
(585)		   endo/exo-crine
(1,449)		   embryo
(2,545)		   adult aerial structure
(737)		   young aerial structure
(436)		   root
(188)		   meristem/growing tissue
(137)		   flower/sexual organ
(407)		   seed/fruit/grain
(153)		   pooled
(1,694)		   unclassified
(12,515)		   all
(35,574)		  
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Sample ID Title Number of Data Institute Submission date Platform Sample type Species Organ class Reasoning of the classification
Keywords used for the classification are shown with bold font.
1 GSM409318 Endogenous small RNAs from shoot apex of rice - replicate 3 78,808 University of California Davis 2009-05-27 [HT Sequencing] 454 GS (Oryza sativa) (GPL9388) SRA Oryza sativa
Oryza sativa		 meristem/growing tissue Endogenous small RNAs from shoot apex of rice - replicate 3
2 GSM409313 Endogenous small RNAs from root apex of rice - replicate 1 73,710 University of California Davis 2009-05-27 [HT Sequencing] 454 GS (Oryza sativa) (GPL9388) SRA Oryza sativa
Oryza sativa		 meristem/growing tissue Endogenous small RNAs from root apex of rice - replicate 1
3 GSM409315 Endogenous small RNAs from root apex of rice - replicate 3 59,760 University of California Davis 2009-05-27 [HT Sequencing] 454 GS (Oryza sativa) (GPL9388) SRA Oryza sativa
Oryza sativa		 meristem/growing tissue Endogenous small RNAs from root apex of rice - replicate 3
4 GSM409316 Endogenous small RNAs from shoot apex of rice - replicate 1 57,351 University of California Davis 2009-05-27 [HT Sequencing] 454 GS (Oryza sativa) (GPL9388) SRA Oryza sativa
Oryza sativa		 meristem/growing tissue Endogenous small RNAs from shoot apex of rice - replicate 1
5 GSM409317 Endogenous small RNAs from shoot apex of rice - replicate 2 51,421 University of California Davis 2009-05-27 [HT Sequencing] 454 GS (Oryza sativa) (GPL9388) SRA Oryza sativa
Oryza sativa		 meristem/growing tissue Endogenous small RNAs from shoot apex of rice - replicate 2
6 GSM409314 Endogenous small RNAs from root apex of rice - replicate 2 22,709 University of California Davis 2009-05-27 [HT Sequencing] 454 GS (Oryza sativa) (GPL9388) SRA Oryza sativa
Oryza sativa		 meristem/growing tissue Endogenous small RNAs from root apex of rice - replicate 2
7 GSM387473 small RNAs from Medicago truncatula, Jemalong A17, Root tips 141,589 INRA/CNRS 2009-03-27 [HT Sequencing] 454 GS FLX (Medicago truncatula) (GPL9322) SRA Medicago truncatula
Medicago truncatula		 meristem/growing tissue Root apexes
8 GSM387474 small RNAs from Medicago truncatula, Jemalong A17, Root tips + NaCl 100 mM 1 hour 141,589 INRA/CNRS 2009-03-27 [HT Sequencing] 454 GS FLX (Medicago truncatula) (GPL9322) SRA Medicago truncatula
Medicago truncatula		 meristem/growing tissue Root apexes + NaCl
9 GSM669402 Endogenous sRNAs from growing buds of O. europaea (PicualxArbequina genetic cross)_growing (juvenile) stage 73,277 Centro de Investigaciones Biológicas 2011-02-05 [HT Sequencing] 454 GS FLX (Olea europaea) (GPL13125) SRA Olea europaea
Olea europaea		 meristem/growing tissue Growing lateral buds, Picual x Arbequina olive variety
10 GSM669403 Endogenous sRNAs from dormant buds of O. europaea (PicualxArbequina genetic cross)_dormant (adult) stage 48,647 Centro de Investigaciones Biológicas 2011-02-05 [HT Sequencing] 454 GS FLX (Olea europaea) (GPL13125) SRA Olea europaea
Olea europaea		 meristem/growing tissue Dormant lateral buds, Picual x Arbequina olive variety
11 GSM278535 454 Shoots 99,654 CSIRO Plant Industry 2008-04-01 [HT Sequencing] CSIRO-PI Oryza Sativa small RNA sequences 2007 (454 sequenced) (GPL6669) other Oryza sativa
Oryza sativa		 meristem/growing tissue shoots
12 GSM442935 Shoot_+Pi_sRNASeq 1,264,620 Academia Sinica 2009-08-20 [HT Sequencing] Illumina Genome Analyzer (Arabidopsis thaliana) (GPL9062) SRA Arabidopsis thaliana
Arabidopsis thaliana		 meristem/growing tissue shoot
13 GSM442934 Shoot_-Pi_sRNASeq 1,257,082 Academia Sinica 2009-08-20 [HT Sequencing] Illumina Genome Analyzer (Arabidopsis thaliana) (GPL9062) SRA Arabidopsis thaliana
Arabidopsis thaliana		 meristem/growing tissue shoot
14 GSM424618 AMS_ChIPSeq 0 Shanghai Jiao Tong University 2009-07-02 [HT Sequencing] Illumina Genome Analyzer (Arabidopsis thaliana) (GPL9062) SRA Arabidopsis thaliana
Arabidopsis thaliana		 meristem/growing tissue plants cells, buds of Arabidopsis
15 GSM506208 AP1-GR_2h_induced_sample_1 0 Plant Research International 2010-02-03 [HT Sequencing] Illumina Genome Analyzer (Arabidopsis thaliana) (GPL9062) SRA Arabidopsis thaliana
Arabidopsis thaliana		 meristem/growing tissue AP1-GR ap1 cal apical meristematic tissue; 2 h induced with DEX
16 GSM506209 AP1-GR_2h_induced_sample_2 0 Plant Research International 2010-02-03 [HT Sequencing] Illumina Genome Analyzer (Arabidopsis thaliana) (GPL9062) SRA Arabidopsis thaliana
Arabidopsis thaliana		 meristem/growing tissue AP1-GR ap1 cal apical meristematic tissue; 2 h induced with DEX
17 GSM506210 AP1-GR_uninduced_control_1 0 Plant Research International 2010-02-03 [HT Sequencing] Illumina Genome Analyzer (Arabidopsis thaliana) (GPL9062) SRA Arabidopsis thaliana
Arabidopsis thaliana		 meristem/growing tissue AP1-GR ap1 cal apical meristematic tissue; uninduced
18 GSM506211 AP1-GR_uninduced_control_2 0 Plant Research International 2010-02-03 [HT Sequencing] Illumina Genome Analyzer (Arabidopsis thaliana) (GPL9062) SRA Arabidopsis thaliana
Arabidopsis thaliana		 meristem/growing tissue AP1-GR ap1 cal apical meristematic tissue; uninduced
19 GSM530098 Ath_wildtype_shoots_bisulfite 0 UCLA 2010-04-02 [HT Sequencing] Illumina Genome Analyzer (Arabidopsis thaliana) (GPL9062) SRA Arabidopsis thaliana
Arabidopsis thaliana		 meristem/growing tissue Shoots
20 GSM543295 Arabidopsis Mnase-Seq (seq, prb) 0 UCLA 2010-05-13 [HT Sequencing] Illumina Genome Analyzer (Arabidopsis thaliana) (GPL9062) SRA Arabidopsis thaliana
Arabidopsis thaliana		 meristem/growing tissue Arabidopsis shoot tissue
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