Gene Expression Omnibus (GEO) Overview Version´╝Ü2014-04-12Japanese page
An overview of the GEO entries broken down by the measurement platforms and the features of the measured samples.
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Data Unit : [ DataSet / Sample / Platform ] Show explanation>> <<Hide explanation
DataSet : Series(GSE) x Platform(GPL). A set of related gene expression data.
Sample : Biological materials.
platform : Methods or instruments used for the gene expression profilings.
The numbers shown in the tabs are the numbers of the data (series, samples or platforms) belonging to the groups.
  Human
(615,734)
  Primates
(5,814)
  Rodents
(225,055)
  Mammals
(20,968)
  Vertebrates
(22,581)
  Invertebrates
(46,584)
  Plants
(107,706)
  Bacteria
(45,091)
  Viruses
(1,432)
  Phages
(112)
  Unclassified
(6,986)
  All
(1,101,311)
 
  SAGE NlaIII
(1,697)
  SAGE RsaI
(3)
  SAGE Sau3A
(54)
  MPSS
(507)
  GeneChip
(441,758)
  Tiling Array
(24,730)
  cDNA Array
(109,124)
  Oligo Array
(288,250)
  Bead Array
(148,432)
  Protein Array
(5)
  Antibody
(1,287)
  RT-PCR
(6,509)
  HT-Seq
(64,850)
  Other
(13,899)
  All
(1,101,311)
 
  brain
(3,836)
  blood
(8,820)
  connective
(3,686)
  reproductive
(2,705)
  muscular
(1,949)
  digestive
(2,864)
  liver
(1,754)
  lung
(1,526)
  urinary
(1,086)
  endo/exo-crine
(2,518)
  embryo
(5,613)
  adult aerial structure
(1,222)
  young aerial structure
(694)
  root
(369)
  meristem/growing tissue
(201)
  flower/sexual organ
(596)
  seed/fruit/grain
(267)
  pooled
(2,869)
  unclassified
(22,275)
  all
(64,850)
 
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Sample ID Title Number of Data Institute Submission date Platform Sample type Species Organ class Reasoning of the classification
Keywords used for the classification are shown with bold font.
1 GSM387519 Endogenous small RNAs from synthetic allopolyploid, F7 generation, wild type, leaf (F7L) 66,160 University of Chicago 2009-03-29 [HT Sequencing] 454 GS (Arabidopsis arenosa) (GPL9414) SRA Arabidopsis thaliana,Arabidopsis arenosa
Arabidopsis thaliana,Arabidopsis arenosa
pooled leaf, F7
2 GSM387517 Endogenous small RNAs from synthetic allopolyploid, F1 generation, wild type, leaf (F1L) 37,401 University of Chicago 2009-03-29 [HT Sequencing] 454 GS (Arabidopsis arenosa) (GPL9414) SRA Arabidopsis thaliana,Arabidopsis arenosa
Arabidopsis thaliana,Arabidopsis arenosa
pooled leaf, F1
3 GSM999786 CcMyc-5SAGE 0 The Chinese University of Hong Kong 2012-09-10 [HT Sequencing] 454 GS 20 (Coprinopsis cinerea) (GPL16031) SRA Coprinopsis cinerea
Coprinopsis cinerea
pooled Vegetative mycelium
4 GSM999787 CcPri-5SAGE 0 The Chinese University of Hong Kong 2012-09-10 [HT Sequencing] 454 GS 20 (Coprinopsis cinerea) (GPL16031) SRA Coprinopsis cinerea
Coprinopsis cinerea
pooled Stage 1 primordium
5 GSM1212965 Phytophthora ramorum mycelium small RNA 0 Donald Danforth Plant Science Center 2013-08-20 [HT Sequencing] 454 GS 20 (Phytophthora ramorum) (GPL17597) SRA Phytophthora ramorum
Phytophthora ramorum
pooled mycelium
6 GSM1212966 Phytophthora sojae mycelium small RNA 0 Donald Danforth Plant Science Center 2013-08-20 [HT Sequencing] 454 GS 20 (Phytophthora sojae) (GPL17598) SRA Phytophthora sojae
Phytophthora sojae
pooled mycelium
7 GSM469976 RNA_whole_worm_mixed_stages, RACE, A 0 NYU Center for Genomics and Systems Biology 2009-11-12 [HT Sequencing] 454 GS FLX (Caenorhabditis elegans) (GPL9085) SRA Caenorhabditis elegans
Caenorhabditis elegans
pooled RNA_whole_worm_mixed_stages, RACE, A
8 GSM547247 RNA_whole_worm_mixed_stages, RACE, B 0 NYU Center for Genomics and Systems Biology 2010-05-26 [HT Sequencing] 454 GS FLX (Caenorhabditis elegans) (GPL9085) SRA Caenorhabditis elegans
Caenorhabditis elegans
pooled RNA_whole_worm_mixed_stages, RACE, B
9 GSM547248 RNA_whole_worm_mixed_stages, RACE, C 0 NYU Center for Genomics and Systems Biology 2010-05-26 [HT Sequencing] 454 GS FLX (Caenorhabditis elegans) (GPL9085) SRA Caenorhabditis elegans
Caenorhabditis elegans
pooled RNA_whole_worm_mixed_stages, RACE, C
10 GSM547249 RNA_whole_worm_mixed_stages, RACE, D 0 NYU Center for Genomics and Systems Biology 2010-05-26 [HT Sequencing] 454 GS FLX (Caenorhabditis elegans) (GPL9085) SRA Caenorhabditis elegans
Caenorhabditis elegans
pooled RNA_whole_worm_mixed_stages, RACE, D
11 GSM547250 RNA_whole_worm_mixed_stages, RACE, E 0 NYU Center for Genomics and Systems Biology 2010-05-26 [HT Sequencing] 454 GS FLX (Caenorhabditis elegans) (GPL9085) SRA Caenorhabditis elegans
Caenorhabditis elegans
pooled RNA_whole_worm_mixed_stages, RACE, E
12 GSM547251 RNA_whole_worm_mixed_stages, RACE, F 0 NYU Center for Genomics and Systems Biology 2010-05-26 [HT Sequencing] 454 GS FLX (Caenorhabditis elegans) (GPL9085) SRA Caenorhabditis elegans
Caenorhabditis elegans
pooled RNA_whole_worm_mixed_stages, RACE, F
13 GSM547252 RNA_whole_worm_mixed_stages, RACE, G 0 NYU Center for Genomics and Systems Biology 2010-05-26 [HT Sequencing] 454 GS FLX (Caenorhabditis elegans) (GPL9085) SRA Caenorhabditis elegans
Caenorhabditis elegans
pooled RNA_whole_worm_mixed_stages, RACE, G
14 GSM547253 RNA_whole_worm_mixed_stages, RACE, H 0 NYU Center for Genomics and Systems Biology 2010-05-26 [HT Sequencing] 454 GS FLX (Caenorhabditis elegans) (GPL9085) SRA Caenorhabditis elegans
Caenorhabditis elegans
pooled RNA_whole_worm_mixed_stages, RACE, H
15 GSM659170 RNA_whole_worm_mixed_stages [kourosh] 0 NYU Center for Genomics and Systems Biology 2011-01-21 [HT Sequencing] 454 GS FLX (Caenorhabditis elegans) (GPL9085) SRA Caenorhabditis elegans
Caenorhabditis elegans
pooled RNA_whole_worm_mixed_stages [kourosh]
16 GSM675693 RNA_whole_worm_mixed_stages [mskcc] 0 NYU Center for Genomics and Systems Biology 2011-02-15 [HT Sequencing] 454 GS FLX (Caenorhabditis elegans) (GPL9085) SRA Caenorhabditis elegans
Caenorhabditis elegans
pooled RNA_whole_worm_mixed_stages [mskcc]
17 GSM514965 Breast and bladder cancer pool 0 Rosetta Genomics 2010-02-23 [HT Sequencing] 454 GS FLX (Homo sapiens) (GPL9186) SRA Homo sapiens
Homo sapiens
pooled Bladder neoplasia and breast neoplasia
18 GSM514985 Colon and lung cancer pool 0 Rosetta Genomics 2010-02-23 [HT Sequencing] 454 GS FLX (Homo sapiens) (GPL9186) SRA Homo sapiens
Homo sapiens
pooled Colon neoplasia and lung neoplasia
19 GSM392242 pool1-run1 0 Samsung Medical Center 2009-04-15 [HT Sequencing] 454 GS FLX (Mus musculus) (GPL9273) SRA Mus musculus
Mus musculus
pooled muscle or liver from F1 progeny of either one of the five inter-strain crosses
20 GSM392243 pool1-run2 0 Samsung Medical Center 2009-04-15 [HT Sequencing] 454 GS FLX (Mus musculus) (GPL9273) SRA Mus musculus
Mus musculus
pooled muscle or liver from F1 progeny of either one of the five inter-strain crosses
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