Gene Expression Omnibus (GEO) Overview Version´╝Ü2014-04-12Japanese page
An overview of the GEO entries broken down by the measurement platforms and the features of the measured samples.
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Data Unit : [ DataSet / Sample / Platform ] Show explanation>> <<Hide explanation
DataSet : Series(GSE) x Platform(GPL). A set of related gene expression data.
Sample : Biological materials.
platform : Methods or instruments used for the gene expression profilings.
The numbers shown in the tabs are the numbers of the data (series, samples or platforms) belonging to the groups.
  Human
(615,734)
  Primates
(5,814)
  Rodents
(225,055)
  Mammals
(20,968)
  Vertebrates
(22,581)
  Invertebrates
(46,584)
  Plants
(107,706)
  Bacteria
(45,091)
  Viruses
(1,432)
  Phages
(112)
  Unclassified
(6,986)
  All
(1,101,311)
 
  SAGE NlaIII
(1,697)
  SAGE RsaI
(3)
  SAGE Sau3A
(54)
  MPSS
(507)
  GeneChip
(441,758)
  Tiling Array
(24,730)
  cDNA Array
(109,124)
  Oligo Array
(288,250)
  Bead Array
(148,432)
  Protein Array
(5)
  Antibody
(1,287)
  RT-PCR
(6,509)
  HT-Seq
(64,850)
  Other
(13,899)
  All
(1,101,311)
 
  brain
(3,836)
  blood
(8,820)
  connective
(3,686)
  reproductive
(2,705)
  muscular
(1,949)
  digestive
(2,864)
  liver
(1,754)
  lung
(1,526)
  urinary
(1,086)
  endo/exo-crine
(2,518)
  embryo
(5,613)
  adult aerial structure
(1,222)
  young aerial structure
(694)
  root
(369)
  meristem/growing tissue
(201)
  flower/sexual organ
(596)
  seed/fruit/grain
(267)
  pooled
(2,869)
  unclassified
(22,275)
  all
(64,850)
 
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Sample ID Title Number of Data Institute Submission date Platform Sample type Species Organ class Reasoning of the classification
Keywords used for the classification are shown with bold font.
1 GSM171830 Hubrecht/NIOB Ketting zebrafish ovary piRNAs 89,240 Hubrecht Institute 2007-02-26 [HT Sequencing] 454 GS (Danio rerio) (GPL11102) SRA Danio rerio
Danio rerio
ovary Hubrecht/NIOB Ketting zebrafish ovary piRNAs
2 GSM171831 Hubrecht/NIOB Ketting zebrafish testis piRNAs 89,240 Hubrecht Institute 2007-02-26 [HT Sequencing] 454 GS (Danio rerio) (GPL11102) SRA Danio rerio
Danio rerio
testis freshly dissected zebrafish testes
3 GSM590049 50-75 nt piR-ILs associated with Armitage from OSCs 0 Keio University School of Medicine 2010-09-02 [HT Sequencing] 454 GS (Drosophila melanogaster) (GPL10876) SRA Drosophila melanogaster
Drosophila melanogaster
ovary Ovarian somatic cell (OSC) line
4 GSM740470 Prostate epithelial cells (cell culture) 0 Fred Hutchinson Cancer Research Center 2011-06-12 [HT Sequencing] 454 GS (Homo sapiens) (GPL10400) SRA Homo sapiens
Homo sapiens
prostate Prostate epithelial cells (cell culture)
5 GSM740471 Prostate stromal cells (cell culture) 0 Fred Hutchinson Cancer Research Center 2011-06-12 [HT Sequencing] 454 GS (Homo sapiens) (GPL10400) SRA Homo sapiens
Homo sapiens
prostate Prostate stromal cells (cell culture)
6 GSM999244 Mouse P6 Sertoli Cells 0 University of Nevada, Reno 2012-09-07 [HT Sequencing] 454 GS 20 (Mus musculus) (GPL9522) SRA Mus musculus
Mus musculus
testis Sertoli Cells
7 GSM509932 him-8_sperm_small_RNA (454) 0 University of Michigan 2010-02-16 [HT Sequencing] 454 GS FLX (Caenorhabditis elegans) (GPL9085) SRA Caenorhabditis elegans
Caenorhabditis elegans
testis him-8 sperm
8 GSM509933 fer-1_oocyte_small_RNA (454) 0 University of Michigan 2010-02-16 [HT Sequencing] 454 GS FLX (Caenorhabditis elegans) (GPL9085) SRA Caenorhabditis elegans
Caenorhabditis elegans
ovary fer-1 oocyte
9 GSM378200 FLX sequencing of Piwi-associated small RNAs extracted from Drosophila ovarian somatic cells (OSC) 10,890 National Institute of Advanced Industrial Science and Technology 2009-03-06 [HT Sequencing] 454 GS FLX (Drosophila melanogaster) (GPL9333) SRA Drosophila melanogaster
Drosophila melanogaster
ovary ovarian somatic cell (OSC)
10 GSM1267493 Iso1a-454-5' 0 INRA 2013-11-18 [HT Sequencing] 454 GS FLX (Drosophila melanogaster) (GPL9333) SRA Drosophila melanogaster
Drosophila melanogaster
ovary ovary cells
11 GSM1138763 [E-MTAB-1222] polyA+_testis_7060321 0 European Bioinformatics Institute 2013-05-09 [HT Sequencing] 454 GS FLX (Homo sapiens) (GPL9186) SRA Homo sapiens
Homo sapiens
testis polyA+_testis_7060321
12 GSM1138765 [E-MTAB-1226] polyA+_testis_7060321 0 European Bioinformatics Institute 2013-05-09 [HT Sequencing] 454 GS FLX (Homo sapiens) (GPL9186) SRA Homo sapiens
Homo sapiens
testis polyA+_testis_7060321
13 GSM1186177 Igk GF LP mouse 1 0 Boston Children's Hospital 2013-07-15 [HT Sequencing] 454 GS FLX (Mus musculus) (GPL9273) SRA Mus musculus
Mus musculus
testis lamina propria from germ free mice
14 GSM1186178 Igk GF LP mouse 2 0 Boston Children's Hospital 2013-07-15 [HT Sequencing] 454 GS FLX (Mus musculus) (GPL9273) SRA Mus musculus
Mus musculus
testis lamina propria from germ free mice
15 GSM1186179 Igk GF LP mouse 3 0 Boston Children's Hospital 2013-07-15 [HT Sequencing] 454 GS FLX (Mus musculus) (GPL9273) SRA Mus musculus
Mus musculus
testis lamina propria from germ free mice
16 GSM1186183 IgH GF LP mouse 1 0 Boston Children's Hospital 2013-07-15 [HT Sequencing] 454 GS FLX (Mus musculus) (GPL9273) SRA Mus musculus
Mus musculus
testis lamina propria from germ free mice
17 GSM1186184 IgH GF LP mouse 2 0 Boston Children's Hospital 2013-07-15 [HT Sequencing] 454 GS FLX (Mus musculus) (GPL9273) SRA Mus musculus
Mus musculus
testis lamina propria from germ free mice
18 GSM1186185 IgH GF LP mouse 3 0 Boston Children's Hospital 2013-07-15 [HT Sequencing] 454 GS FLX (Mus musculus) (GPL9273) SRA Mus musculus
Mus musculus
testis lamina propria from germ free mice
19 GSM389464 X. tropicalis Microtubules Small RNAs 41,754 Brandeis University 2009-04-04 [HT Sequencing] 454 GS FLX (Xenopus (Silurana) tropicalis) (GPL9406) SRA Xenopus (Silurana) tropicalis
Xenopus tropicalis
ovary Small RNAs from Microtubules from X.tropicalis Egg Extract
20 GSM389472 X. tropicalis Egg Extract Small RNAs 33,317 Brandeis University 2009-04-05 [HT Sequencing] 454 GS FLX (Xenopus (Silurana) tropicalis) (GPL9406) SRA Xenopus (Silurana) tropicalis
Xenopus tropicalis
ovary Small RNAs from X.tropicalis Egg Extract
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