Gene Expression Omnibus (GEO) Overview Version：2013-06-15Japanese page
An overview of the GEO entries broken down by the measurement platforms and the features of the measured samples.
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Data Unit : [ DataSet / Sample / Platform ] Show explanation>> <<Hide explanation
DataSet : Series(GSE) x Platform(GPL). A set of related gene expression data.
Sample : Biological materials.
platform : Methods or instruments used for the gene expression profilings.
The numbers shown in the tabs are the numbers of the data (series, samples or platforms) belonging to the groups.
  Human
(521,594)		   Primates
(5,069)		   Rodents
(189,292)		   Mammals
(16,929)		   Vertebrates
(18,759)		   Invertebrates
(38,793)		   Plants
(93,301)		   Bacteria
(39,613)		   Viruses
(1,263)		   Phages
(101)		   Unclassified
(5,497)		   All
(931,947)		  
  SAGE NlaIII
(1,683)		   SAGE RsaI
(3)		   SAGE Sau3A
(54)		   MPSS
(439)		   GeneChip
(391,468)		   Tiling Array
(22,222)		   cDNA Array
(104,397)		   Oligo Array
(247,270)		   Bead Array
(112,023)		   Protein Array
(5)		   Antibody
(1,160)		   RT-PCR
(4,486)		   HT-Seq
(39,106)		   Other
(7,515)		   All
(931,947)		  
  brain
(2,667)		   blood
(5,116)		   connective
(2,209)		   reproductive
(1,931)		   muscular
(888)		   digestive
(1,231)		   liver
(1,138)		   lung
(1,009)		   urinary
(602)		   endo/exo-crine
(1,524)		   embryo
(3,058)		   adult aerial structure
(801)		   young aerial structure
(470)		   root
(230)		   meristem/growing tissue
(165)		   flower/sexual organ
(425)		   seed/fruit/grain
(169)		   pooled
(1,931)		   unclassified
(13,542)		   all
(39,106)		  
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Sample ID Title Number of Data Institute Submission date Platform Sample type Species Organ class Reasoning of the classification
Keywords used for the classification are shown with bold font.
1 GSM171830 Hubrecht/NIOB Ketting zebrafish ovary piRNAs 89,240 Hubrecht Institute 2007-02-26 [HT Sequencing] 454 GS (Danio rerio) (GPL11102) SRA Danio rerio
Danio rerio		 ovary Hubrecht/NIOB Ketting zebrafish ovary piRNAs
2 GSM171831 Hubrecht/NIOB Ketting zebrafish testis piRNAs 89,240 Hubrecht Institute 2007-02-26 [HT Sequencing] 454 GS (Danio rerio) (GPL11102) SRA Danio rerio
Danio rerio		 testis freshly dissected zebrafish testes
3 GSM590049 50-75 nt piR-ILs associated with Armitage from OSCs 0 Keio University School of Medicine 2010-09-02 [HT Sequencing] 454 GS (Drosophila melanogaster) (GPL10876) SRA Drosophila melanogaster
Drosophila melanogaster		 ovary Ovarian somatic cell (OSC) line
4 GSM740470 Prostate epithelial cells (cell culture) 0 Fred Hutchinson Cancer Research Center 2011-06-12 [HT Sequencing] 454 GS (Homo sapiens) (GPL10400) SRA Homo sapiens
Homo sapiens		 prostate Prostate epithelial cells (cell culture)
5 GSM740471 Prostate stromal cells (cell culture) 0 Fred Hutchinson Cancer Research Center 2011-06-12 [HT Sequencing] 454 GS (Homo sapiens) (GPL10400) SRA Homo sapiens
Homo sapiens		 prostate Prostate stromal cells (cell culture)
6 GSM999244 Mouse P6 Sertoli Cells 0 University of Nevada, Reno 2012-09-07 [HT Sequencing] 454 GS 20 (Mus musculus) (GPL9522) SRA Mus musculus
Mus musculus		 testis Sertoli Cells
7 GSM509932 him-8_sperm_small_RNA (454) 0 University of Michigan 2010-02-16 [HT Sequencing] 454 GS FLX (Caenorhabditis elegans) (GPL9085) SRA Caenorhabditis elegans
Caenorhabditis elegans		 testis him-8 sperm
8 GSM509933 fer-1_oocyte_small_RNA (454) 0 University of Michigan 2010-02-16 [HT Sequencing] 454 GS FLX (Caenorhabditis elegans) (GPL9085) SRA Caenorhabditis elegans
Caenorhabditis elegans		 ovary fer-1 oocyte
9 GSM378200 FLX sequencing of Piwi-associated small RNAs extracted from Drosophila ovarian somatic cells (OSC) 10,890 National Institute of Advanced Industrial Science and Technology 2009-03-06 [HT Sequencing] 454 GS FLX (Drosophila melanogaster) (GPL9333) SRA Drosophila melanogaster
Drosophila melanogaster		 ovary ovarian somatic cell (OSC)
10 GSM389464 X. tropicalis Microtubules Small RNAs 41,754 Brandeis University 2009-04-04 [HT Sequencing] 454 GS FLX (Xenopus (Silurana) tropicalis) (GPL9406) SRA Xenopus (Silurana) tropicalis
Xenopus tropicalis		 ovary Small RNAs from Microtubules from X.tropicalis Egg Extract
11 GSM389472 X. tropicalis Egg Extract Small RNAs 33,317 Brandeis University 2009-04-05 [HT Sequencing] 454 GS FLX (Xenopus (Silurana) tropicalis) (GPL9406) SRA Xenopus (Silurana) tropicalis
Xenopus tropicalis		 ovary Small RNAs from X.tropicalis Egg Extract
12 GSM389476 X.laevis Microtubules Small RNAs 68,710 Brandeis University 2009-04-05 [HT Sequencing] 454 GS FLX (Xenopus laevis) (GPL9407) SRA Xenopus laevis
Xenopus laevis		 ovary Small RNAs from Microtubules from X.laevis Egg Extract
13 GSM389474 X.laevis Egg Extract Small RNAs 15,392 Brandeis University 2009-04-05 [HT Sequencing] 454 GS FLX (Xenopus laevis) (GPL9407) SRA Xenopus laevis
Xenopus laevis		 ovary Small RNAs from X.laevis Egg Extract
14 GSM179088 Developmentally regulated piRNA clusters implicate MILI in transposon control 136,417 Cold Spring Harbor Laboratory 2007-03-30 [HT Sequencing] 454 sequencing of small RNAs from mouse (GPL5050) MPSS Mus musculus
Mus musculus		 testis testes from 10-day old CD-1 mice
15 GSM719445 DNA Capture sequencing 2 (454) 0 University of Queensland 2011-05-03 [HT Sequencing] 454 Titanium (Homo sapiens) (GPL13484) SRA Homo sapiens
Homo sapiens		 placenta Fetal lung (FL) fibroblasts
16 GSM719447 DNA Capture sequencing 4 (454) 0 University of Queensland 2011-05-03 [HT Sequencing] 454 Titanium (Homo sapiens) (GPL13484) SRA Homo sapiens
Homo sapiens		 placenta Fetal lung (FL) fibroblasts
17 GSM719454 RNA Capture sequencing 7 (454) 0 University of Queensland 2011-05-03 [HT Sequencing] 454 Titanium (Homo sapiens) (GPL13484) SRA Homo sapiens
Homo sapiens		 placenta Fetal lung (FL) fibroblasts
18 GSM719455 RNA Capture sequencing 8 (454) 0 University of Queensland 2011-05-03 [HT Sequencing] 454 Titanium (Homo sapiens) (GPL13484) SRA Homo sapiens
Homo sapiens		 placenta Fetal lung (FL) fibroblasts
19 GSM719456 RNA Capture sequencing 9 (454) 0 University of Queensland 2011-05-03 [HT Sequencing] 454 Titanium (Homo sapiens) (GPL13484) SRA Homo sapiens
Homo sapiens		 placenta Fetal lung (FL) fibroblasts
20 GSM719457 RNA Capture sequencing 10 (454) 0 University of Queensland 2011-05-03 [HT Sequencing] 454 Titanium (Homo sapiens) (GPL13484) SRA Homo sapiens
Homo sapiens		 placenta Fetal lung (FL) fibroblasts
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