Gene Expression Omnibus (GEO) Overview Version：2013-04-06Japanese page
An overview of the GEO entries broken down by the measurement platforms and the features of the measured samples.
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Data unit : [ DataSet / Sample / Platform ] Show explanation>> <<Hide explanation
DataSet : Series(GSE) x Platform(GPL). A set of related gene expression data.
Sample : Biological materials.
platform : Methods or instruments used for the gene expression profilings.
The numbers shown in the tabs are the numbers of the data (series, samples or platforms) belonging to the groups.
  Human
(17,885)		   Primates
(199)		   Rodents
(12,016)		   Mammals
(754)		   Vertebrates
(1,115)		   Invertebrates
(3,796)		   Plants
(6,479)		   Bacteria
(2,920)		   Viruses
(51)		   Phages
(4)		   Unclassified
(249)		   All
(45,516)		  
  SAGE NlaIII
(224)		   SAGE RsaI
(1)		   SAGE Sau3A
(16)		   MPSS
(56)		   GeneChip
(16,580)		   Tiling Array
(3,529)		   cDNA Array
(5,792)		   Oligo Array
(11,628)		   Bead Array
(2,848)		   Protein Array
(1)		   Antibody
(37)		   RT-PCR
(223)		   HT-Seq
(4,411)		   Other
(158)		   All
(45,516)		  
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Title Platform Institute Submission date Species Data size
(probes x samples)		 Sample NCBI
FTP
site
Animal Plant  
brain blood connective reproductive muscular digestive liver lung urinary endo/exo-crine embryo adult aerial structure young aerial structure root meristem/growing tissue flower/sexual organ seed/fruit/grain pooled unclassified
1 MPSS analysis of mouse BLK CL.4 and liver cells (GSE1067) [MPSS] MPSS [DpnII: Mus musculus] signature list (GPL1010) Solexa 2004-02-25 Mus musculus
Mus musculus		 430,512
(71,752 x 6) 		3 3 by_platform
by_series
2 MPSS mouse transcriptome analysis project (GSE1581) [MPSS] MPSS [DpnII: Mus musculus] signature list (GPL1010) Solexa 2004-07-21 Mus musculus
Mus musculus		 6,242,424
(71,752 x 87) 		22 6 10 6 6 7 3 2 3 7 3 12 by_platform
by_series
3 Human 32 MPSS samples (GSE1747) [MPSS] Massively Parallel Signature Sequencing - MPSS (classic method) (GPL1443) Lynx Therapeutics, Inc. 2004-09-10 Homo sapiens
Homo sapiens		 12,533,408
(391,669 x 32) 		9 4 4 1 3 2 2 6 1 by_platform
by_series
4 Small RNA identification in Arabidopsis thaliana using modified MPSS (GSE3008) [MPSS] Small RNA identification in Arabidopsis thaliana using modified MPSS (GPL2675) University of Delaware 2005-07-26 Arabidopsis thaliana
Arabidopsis thaliana		 726,328
(181,582 x 4) 		2 2 by_platform
by_series
5 Growth heterosis in larvae of the Pacific oyster as revealed by MPSS (GSE3596) [MPSS] oyster MPSS (GPL3062) Solexa, Inc. 2005-11-10 Crassostrea gigas
Crassostrea gigas		 211,312
(52,828 x 4) 		4 by_platform
by_series
6 Genomic and genetic characterization of rice Cen3 reveals evolutionary remnants of a complex centromere (small RNA data) (GSE4912) [MPSS] Rice small RNA MPSS signatures (GPL3776) University of Delaware 2006-05-24 Oryza sativa
Oryza sativa		 299,454
(299,454 x 1) 		1 by_platform
by_series
7 Genomic and genetic characterization of rice Cen3 reveals evolutionary remnants of a complex centromere (mRNA data) (GSE4920) [MPSS] Rice mRNA MPSS signatures (GPL3777) University of Delaware 2006-05-24 Oryza sativa
Oryza sativa		 249,990
(249,990 x 1) 		1 by_platform
by_series
8 Genomic and genetic characterization of rice Cen3 reveals evolutionary remnants of a complex centromere (GSE4924) [MPSS] Rice small RNA MPSS signatures (GPL3776) University of Delaware 2006-05-25 Oryza sativa
Oryza sativa		 299,454
(299,454 x 1) 		1 by_platform
by_series
9 Genomic and genetic characterization of rice Cen3 reveals evolutionary remnants of a complex centromere (GSE4924) [MPSS] Rice mRNA MPSS signatures (GPL3777) University of Delaware 2006-05-25 Oryza sativa
Oryza sativa		 249,990
(249,990 x 1) 		1 by_platform
by_series
10 Inner Ear Tissues (GSE4965) [MPSS] MPSS inner ear signature list (GPL3835) National Institute on Deafness and Other Communication Disorders (NIDCD) 2006-06-01 Mus musculus
Mus musculus		 184,986
(61,662 x 3) 		3 by_platform
by_series
11 Small RNA identification in Arabidopsis thaliana using 454 data (GSE5343) [MPSS] Small RNA identification in Arabidopsis thaliana using modified MPSS (GPL2675) University of Delaware 2006-07-18 Arabidopsis thaliana
Arabidopsis thaliana		 181,582
(181,582 x 1) 		1 by_platform
by_series
12 The protective role of silicon in the Arabidopsis-powdery mildew pathosystem (GSE5718) [MPSS] Agilent-012600 Arabidopsis 3 Oligo Microarray (4142A (Feature Number version) (GPL2871) Laval University 2006-09-01 Arabidopsis thaliana
Arabidopsis thaliana		 1,062,960
(44,290 x 24) 		24 by_platform
by_series
13 MPSS profiling of embryonic gonad and primordial germ cells (GSE5909) [MPSS] Chicken mRNA MPSS signatures (GPL4337) Seoul National University 2006-09-25 Gallus gallus
Gallus gallus		 284,044
(142,022 x 2) 		2 by_platform
by_series
14 Comparison of Hybridization-based and Sequencing-based Gene Expression Technologies on Biological Replicates (GSE6313) [MPSS] MPSS 20bp [DpnII: Mus musculus] signature list (GPL4571) Harvard Medical School 2006-11-18 Mus musculus
Mus musculus		 101,454
(50,727 x 2) 		2 by_platform
by_series
15 Comparison of Hybridization-based and Sequencing-based Gene Expression Technologies on Biological Replicates (GSE6313) [MPSS] MPSS 17bp [DpnII: Mus musculus] signature list (GPL4572) Harvard Medical School 2006-11-18 Mus musculus
Mus musculus		 94,900
(47,450 x 2) 		2 by_platform
by_series
16 An expression atlas of rice mRNAs and small RNAs (GSE7107) [MPSS] Rice mRNA MPSS signatures (GPL3777) University of Delaware 2007-02-22 Oryza sativa
Oryza sativa		 4,499,820
(249,990 x 18) 		6 1 5 1 3 1 1 by_platform
by_series
17 An expression atlas of rice mRNAs and small RNAs (GSE7107) [MPSS] Rice small RNA MPSS signatures (GPL3776) University of Delaware 2007-02-22 Oryza sativa
Oryza sativa		 898,362
(299,454 x 3) 		1 1 1 by_platform
by_series
18 Comparison of expression in Arabidopsis mutant tdt-1 and wild type (GSE7359) [MPSS] Agilent-012600 Arabidopsis 3 Oligo Microarray (4142A (Feature Number version) (GPL2871) University of Utah 2007-03-23 Arabidopsis thaliana
Arabidopsis thaliana		 132,870
(44,290 x 3) 		3 by_platform
by_series
19 SAGE and MPSS libraries from activated CD4+ T cell clone 29 (GSE8612) [MPSS] MPSS tags from techical comparison of SAGE and MPSS (GPL5678) University of Oxford 2007-07-27 Homo sapiens
Homo sapiens		 90,297
(30,099 x 3) 		3 by_platform
by_series
20 A Comparison of microarray and MPSS Technology Platforms for Expression Analysis of Arabidopsis (GSE8994) [MPSS] Arabidopsis mRNA MPSS signatures (GPL5800) University of Manchester 2007-09-10 Arabidopsis thaliana
Arabidopsis thaliana		 3,270,443
(297,313 x 11) 		3 1 6 1 by_platform
by_series
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