Gene Expression Omnibus (GEO) Overview Version：2013-04-06Japanese page
An overview of the GEO entries broken down by the measurement platforms and the features of the measured samples.
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Data unit : [ DataSet / Sample / Platform ] Show explanation>> <<Hide explanation
DataSet : Series(GSE) x Platform(GPL). A set of related gene expression data.
Sample : Biological materials.
platform : Methods or instruments used for the gene expression profilings.
The numbers shown in the tabs are the numbers of the data (series, samples or platforms) belonging to the groups.
  Human
(17,885)		   Primates
(199)		   Rodents
(12,016)		   Mammals
(754)		   Vertebrates
(1,115)		   Invertebrates
(3,796)		   Plants
(6,479)		   Bacteria
(2,920)		   Viruses
(51)		   Phages
(4)		   Unclassified
(249)		   All
(45,516)		  
  SAGE NlaIII
(224)		   SAGE RsaI
(1)		   SAGE Sau3A
(16)		   MPSS
(56)		   GeneChip
(16,580)		   Tiling Array
(3,529)		   cDNA Array
(5,792)		   Oligo Array
(11,628)		   Bead Array
(2,848)		   Protein Array
(1)		   Antibody
(37)		   RT-PCR
(223)		   HT-Seq
(4,411)		   Other
(158)		   All
(45,516)		  
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Title Platform Institute Submission date Species Data size
(probes x samples)		 Sample NCBI
FTP
site
Animal Plant  
brain blood connective reproductive muscular digestive liver lung urinary endo/exo-crine embryo adult aerial structure young aerial structure root meristem/growing tissue flower/sexual organ seed/fruit/grain pooled unclassified
1 Human 32 MPSS samples (GSE1747) [MPSS] Massively Parallel Signature Sequencing - MPSS (classic method) (GPL1443) Lynx Therapeutics, Inc. 2004-09-10 Homo sapiens
Homo sapiens		 12,533,408
(391,669 x 32) 		9 4 4 1 3 2 2 6 1 by_platform
by_series
2 MPSS mouse transcriptome analysis project (GSE1581) [MPSS] MPSS [DpnII: Mus musculus] signature list (GPL1010) Solexa 2004-07-21 Mus musculus
Mus musculus		 6,242,424
(71,752 x 87) 		22 6 10 6 6 7 3 2 3 7 3 12 by_platform
by_series
3 An expression atlas of rice mRNAs and small RNAs (GSE7107) [MPSS] Rice mRNA MPSS signatures (GPL3777) University of Delaware 2007-02-22 Oryza sativa
Oryza sativa		 4,499,820
(249,990 x 18) 		6 1 5 1 3 1 1 by_platform
by_series
4 A Comparison of microarray and MPSS Technology Platforms for Expression Analysis of Arabidopsis (GSE8994) [MPSS] Arabidopsis mRNA MPSS signatures (GPL5800) University of Manchester 2007-09-10 Arabidopsis thaliana
Arabidopsis thaliana		 3,270,443
(297,313 x 11) 		3 1 6 1 by_platform
by_series
5 Arabidopsis thaliana tetraploid transcriptome (GSE18482) [MPSS] Agilent-015059 Arabidopsis 3 Oligo Microarray 4x44K G2519F (Feature Number version) (GPL6177) Technische Universität München, WZW 2009-10-08 Arabidopsis thaliana
Arabidopsis thaliana		 2,170,560
(45,220 x 48) 		12 36 by_platform
by_series
6 Profiling of caf1a and caf1b mutants (GSE17022) [MPSS] Agilent-015059 Arabidopsis 3 Oligo Microarray 4x44K G2519F (Feature Number version) (GPL6177) UCSD 2009-07-08 Arabidopsis thaliana
Arabidopsis thaliana		 1,220,940
(45,220 x 27) 		27 by_platform
by_series
7 Genome-wide analysis for rice small RNAs by MPSS (GSE10523) [MPSS] Rice small RNA MPSS signatures (GPL3776) University of Delaware 2008-02-14 Oryza sativa
Oryza sativa		 1,197,816
(299,454 x 4) 		3 1 by_platform
by_series
8 The protective role of silicon in the Arabidopsis-powdery mildew pathosystem (GSE5718) [MPSS] Agilent-012600 Arabidopsis 3 Oligo Microarray (4142A (Feature Number version) (GPL2871) Laval University 2006-09-01 Arabidopsis thaliana
Arabidopsis thaliana		 1,062,960
(44,290 x 24) 		24 by_platform
by_series
9 Root transcriptome remodeling of Arabidopsis in response to high levels of magnesium sulfate (GSE20109) [MPSS] Agilent-015059 Arabidopsis 3 Oligo Microarray 4x44K G2519F (Feature Number version) (GPL6177) University of Florida 2010-01-29 Arabidopsis thaliana
Arabidopsis thaliana		 904,400
(45,220 x 20) 		20 by_platform
by_series
10 An expression atlas of rice mRNAs and small RNAs (GSE7107) [MPSS] Rice small RNA MPSS signatures (GPL3776) University of Delaware 2007-02-22 Oryza sativa
Oryza sativa		 898,362
(299,454 x 3) 		1 1 1 by_platform
by_series
11 Small RNA identification in Arabidopsis thaliana using modified MPSS (GSE3008) [MPSS] Small RNA identification in Arabidopsis thaliana using modified MPSS (GPL2675) University of Delaware 2005-07-26 Arabidopsis thaliana
Arabidopsis thaliana		 726,328
(181,582 x 4) 		2 2 by_platform
by_series
12 Dynamics of membrane potential variation and gene expression induced by Spodoptera littoralis, Myzus persicae, and Pseudomonas syringae in Arabidopsis (GSE40926) [MPSS] Agilent-015059 Arabidopsis 3 Oligo Microarray 4x44K G2519F (Feature Number version) (GPL6177) University of Turin 2012-09-17 Arabidopsis thaliana
Arabidopsis thaliana		 542,640
(45,220 x 12) 		12 by_platform
by_series
13 Functional analysis of HSFB transcription factors [22°C] (GSE14702) [MPSS] Agilent-015059 Arabidopsis 3 Oligo Microarray 4x44K G2519F (Feature Number version) (GPL6177) National Institute of Advanced Industrial Science and Technology 2009-02-04 Arabidopsis thaliana
Arabidopsis thaliana		 452,200
(45,220 x 10) 		4 6 by_platform
by_series
14 Functional analysis of Arabidopsis HSFB transcription factor (GSE31888) [MPSS] Agilent-015059 Arabidopsis 3 Oligo Microarray 4x44K G2519F (Feature Number version) (GPL6177) National Institute of Advanced Industrial Science and Technology 2011-09-06 Arabidopsis thaliana
Arabidopsis thaliana		 452,200
(45,220 x 10) 		4 6 by_platform
by_series
15 Comparison of Arabidopsis callus (GSE21631) [MPSS] Agilent-015059 Arabidopsis 3 Oligo Microarray 4x44K G2519F (Probe Name version) (GPL7299) National Institute of Advanced Industrial Science and Technology 2010-05-03 Arabidopsis thaliana
Arabidopsis thaliana		 450,636
(37,553 x 12) 		3 9 by_platform
by_series
16 MPSS analysis of mouse BLK CL.4 and liver cells (GSE1067) [MPSS] MPSS [DpnII: Mus musculus] signature list (GPL1010) Solexa 2004-02-25 Mus musculus
Mus musculus		 430,512
(71,752 x 6) 		3 3 by_platform
by_series
17 Comparison of SND2-overexpressing and wild type Arabidopsis thaliana Col-0 inflorescence stems (GSE29693) [MPSS] Agilent-015059 Arabidopsis 3 Oligo Microarray 4x44K G2519F (Feature Number version) (GPL6177) University of Pretoria 2011-06-02 Arabidopsis thaliana
Arabidopsis thaliana		 361,760
(45,220 x 8) 		8 by_platform
by_series
18 Functional characterization of Arabidopsis mutants deficient in cytosolic APX1 and peroxisomal CAT2 (GSE19857) [MPSS] Agilent-012600 Arabidopsis 3 Oligo Microarray (4142A (Feature Number version) (GPL2871) Flanders Institute for Biotechnology (VIB) 2010-01-12 Arabidopsis thaliana
Arabidopsis thaliana		 354,320
(44,290 x 8) 		8 by_platform
by_series
19 Gene expression profiles in Arabidopsis plants during the treatment of AgNO3. (GSE34606) [MPSS] Agilent-015059 Arabidopsis 3 Oligo Microarray 4x44K G2519F (Probe Name version) (GPL7299) Osaka Prefecture University 2011-12-21 Arabidopsis thaliana
Arabidopsis thaliana		 337,977
(37,553 x 9) 		9 by_platform
by_series
20 Transcriptomic analysis of the voz1 voz2 double mutant (GSE24741) [MPSS] Agilent-015059 Arabidopsis 3 Oligo Microarray 4x44K G2519F (Probe Name version) (GPL7299) National Institute of Advanced Industrial Science and Technology 2010-10-16 Arabidopsis thaliana
Arabidopsis thaliana		 300,424
(37,553 x 8) 		8 by_platform
by_series
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