Gene Expression Omnibus (GEO) Overview Version：2013-06-15Japanese page
An overview of the GEO entries broken down by the measurement platforms and the features of the measured samples.
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Data Unit : [ DataSet / Sample / Platform ] Show explanation>> <<Hide explanation
DataSet : Series(GSE) x Platform(GPL). A set of related gene expression data.
Sample : Biological materials.
platform : Methods or instruments used for the gene expression profilings.
The numbers shown in the tabs are the numbers of the data (series, samples or platforms) belonging to the groups.
  Human
(521,594)		   Primates
(5,069)		   Rodents
(189,292)		   Mammals
(16,929)		   Vertebrates
(18,759)		   Invertebrates
(38,793)		   Plants
(93,301)		   Bacteria
(39,613)		   Viruses
(1,263)		   Phages
(101)		   Unclassified
(5,497)		   All
(931,947)		  
  SAGE NlaIII
(1,683)		   SAGE RsaI
(3)		   SAGE Sau3A
(54)		   MPSS
(439)		   GeneChip
(391,468)		   Tiling Array
(22,222)		   cDNA Array
(104,397)		   Oligo Array
(247,270)		   Bead Array
(112,023)		   Protein Array
(5)		   Antibody
(1,160)		   RT-PCR
(4,486)		   HT-Seq
(39,106)		   Other
(7,515)		   All
(931,947)		  
  brain
(35)		   blood
(13)		   connective
(10)		   reproductive
(12)		   muscular
(7)		   digestive
(10)		   liver
(6)		   lung
(4)		   urinary
(5)		   endo/exo-crine
(13)		   embryo
(3)		   adult aerial structure
(49)		   young aerial structure
(85)		   root
(32)		   meristem/growing tissue
(26)		   flower/sexual organ
(9)		   seed/fruit/grain
(3)		   pooled
(20)		   unclassified
(97)		   all
(439)		  
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Sample ID Title Number of Data Institute Submission date Platform Sample type Species Organ class Reasoning of the classification
Keywords used for the classification are shown with bold font.
1 GSM137300 MPSS profiling of primordial germ cells in chicken 142,022 Seoul National University 2006-09-25 [MPSS] Chicken mRNA MPSS signatures (GPL4337) MPSS Gallus gallus
Gallus gallus		 testis primordial germ cells (PGCs)
2 GSM137301 MPSS profiling of embryonic gonad in chicken 142,022 Seoul National University 2006-09-25 [MPSS] Chicken mRNA MPSS signatures (GPL4337) MPSS Gallus gallus
Gallus gallus		 ovary embryonic gonad
3 GSM170917 FLR library 118,998 University of Delaware 2007-02-22 [MPSS] Rice small RNA MPSS signatures (GPL3776) MPSS Oryza sativa
Oryza sativa		 other flower/sexual organ Nipponbare Immature panicles- 90 days old plants
4 GSM302812 xue_rice_seed_MPSS 111,161 Institute of Plant Physiology and Ecology,Shanghai Institutes for Biological Sciences 2008-07-02 [MPSS] IPPE Rice MPSS (GPL7013) MPSS Oryza sativa
Oryza sativa		 other seed/fruit/grain rice seed small RNA
5 GSM65747 Inflorescence tissues, small RNA MPSS 67,528 University of Delaware 2005-07-26 [MPSS] Small RNA identification in Arabidopsis thaliana using modified MPSS (GPL2675) MPSS Arabidopsis thaliana
Arabidopsis thaliana		 other flower/sexual organ Inflorescence tissue
6 GSM30504 Human Testis (HuTe.basl) - 65,706 Lynx Therapeutics, Inc. 2004-09-10 [MPSS] Massively Parallel Signature Sequencing - MPSS (classic method) (GPL1443) MPSS Homo sapiens
Homo sapiens		 testis Human Testis
7 GSM226844 MPSS-AP1-17bp 58,833 University of Manchester 2007-09-04 [MPSS] Arabidopsis mRNA MPSS signatures (GPL5800) MPSS Arabidopsis thaliana
Arabidopsis thaliana		 meristem/growing tissue ap1-10 infloresence - mixed stage, immature buds, signature MPSS
8 GSM170921 STM library 57,101 University of Delaware 2007-02-22 [MPSS] Rice small RNA MPSS signatures (GPL3776) MPSS Oryza sativa
Oryza sativa		 other adult aerial structure Stem
9 GSM30505 Human thymus (HuTm.basl) - mRNA 54,492 Lynx Therapeutics, Inc. 2004-09-10 [MPSS] Massively Parallel Signature Sequencing - MPSS (classic method) (GPL1443) MPSS Homo sapiens
Homo sapiens		 thymus Human thymus mRNA
10 GSM265799 UNT library 52,928 University of Delaware 2008-02-13 [MPSS] Rice small RNA MPSS signatures (GPL3776) MPSS Oryza sativa
Oryza sativa		 young aerial structure Seedling control for ABA treatment
11 GSM30502 Human Spleen (HuSp.basl) - 52,274 Lynx Therapeutics, Inc. 2004-09-10 [MPSS] Massively Parallel Signature Sequencing - MPSS (classic method) (GPL1443) MPSS Homo sapiens
Homo sapiens		 spleen Human Spleen
12 GSM226767 MPSS-INS-17bp 51,933 University of Manchester 2007-09-04 [MPSS] Arabidopsis mRNA MPSS signatures (GPL5800) MPSS Arabidopsis thaliana
Arabidopsis thaliana		 meristem/growing tissue Infloresence - mixed stage, immature buds, signature MPSS
13 GSM146224 MPSS-MRP1-20bp 50,727 Harvard Medical School 2006-11-18 [MPSS] MPSS 20bp [DpnII: Mus musculus] signature list (GPL4571) MPSS Mus musculus
Mus musculus		 retina Adult mouse retina pool 1
14 GSM146225 MPSS-MRP2-20bp 50,727 Harvard Medical School 2006-11-18 [MPSS] MPSS 20bp [DpnII: Mus musculus] signature list (GPL4571) MPSS Mus musculus
Mus musculus		 retina Adult mouse retina pool 2
15 GSM226845 MPSS-AP3-17bp 50,412 University of Manchester 2007-09-04 [MPSS] Arabidopsis mRNA MPSS signatures (GPL5800) MPSS Arabidopsis thaliana
Arabidopsis thaliana		 meristem/growing tissue ap3-6 infloresence - mixed stage, immature buds, signature MPSS
16 GSM30509 Human Uterus (HuUt.basl) - 49,993 Lynx Therapeutics, Inc. 2004-09-10 [MPSS] Massively Parallel Signature Sequencing - MPSS (classic method) (GPL1443) MPSS Homo sapiens
Homo sapiens		 uterus Human Uterus
17 GSM170901 NL4 library 48,664 University of Delaware 2007-02-22 [MPSS] Rice mRNA MPSS signatures (GPL3777) MPSS Oryza sativa
Oryza sativa		 leaf Mature Leaf - Combination of Replicates
18 GSM146222 MPSS-MRP1-17bp 47,450 Harvard Medical School 2006-11-18 [MPSS] MPSS 17bp [DpnII: Mus musculus] signature list (GPL4572) MPSS Mus musculus
Mus musculus		 retina Adult mouse retina pool 1
19 GSM146223 MPSS-MRP2-17bp 47,450 Harvard Medical School 2006-11-18 [MPSS] MPSS 17bp [DpnII: Mus musculus] signature list (GPL4572) MPSS Mus musculus
Mus musculus		 retina Adult mouse retina pool 2
20 GSM361970 Col-0 red light over Col-0 dark replicate 1 45,220 KAIST 2009-01-21 [MPSS] Agilent-015059 Arabidopsis 3 Oligo Microarray 4x44K G2519F (Feature Number version) (GPL6177) RNA Arabidopsis thaliana
Arabidopsis thaliana		 young aerial structure Rc-grown Col-0 seedlings DD-grown Col-0 seedlings
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