Gene Expression Omnibus (GEO) Overview Version：2013-04-06Japanese page
An overview of the GEO entries broken down by the measurement platforms and the features of the measured samples.
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Data Unit : [ DataSet / Sample / Platform ] Show explanation>> <<Hide explanation
DataSet : Series(GSE) x Platform(GPL). A set of related gene expression data.
Sample : Biological materials.
platform : Methods or instruments used for the gene expression profilings.
The numbers shown in the tabs are the numbers of the data (series, samples or platforms) belonging to the groups.
  Human
(16,283)		   Primates
(80)		   Rodents
(6,896)		   Mammals
(298)		   Vertebrates
(469)		   Invertebrates
(517)		   Plants
(5,385)		   Bacteria
(1,328)		   Viruses
(9)		   Phages
(0)		   Unclassified
(100)		   All
(31,365)		  
  SAGE NlaIII
(28)		   SAGE RsaI
(3)		   SAGE Sau3A
(0)		   MPSS
(79)		   GeneChip
(13,710)		   Tiling Array
(988)		   cDNA Array
(2,586)		   Oligo Array
(13,249)		   Bead Array
(523)		   Protein Array
(0)		   Antibody
(0)		   RT-PCR
(24)		   HT-Seq
(160)		   Other
(15)		   All
(31,365)		  
  brain
(0)		   blood
(0)		   connective
(0)		   reproductive
(0)		   muscular
(0)		   digestive
(0)		   liver
(0)		   lung
(0)		   urinary
(0)		   endo/exo-crine
(0)		   embryo
(0)		   adult aerial structure
(10)		   young aerial structure
(33)		   root
(6)		   meristem/growing tissue
(13)		   flower/sexual organ
(2)		   seed/fruit/grain
(0)		   pooled
(0)		   unclassified
(15)		   all
(79)		  
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Sample ID Title Number of Data Institute Submission date Platform Sample type Species Organ class Reasoning of the classification
Keywords used for the classification are shown with bold font.
1 GSM237898 Arabidopsis seedlings (WT) with/without elicitor treatment 39,941 Meiji University 2007-10-17 [MPSS] Agilent-012600 Arabidopsis 3 Oligo Microarray (4142A (Feature Number version) (GPL2871) RNA Arabidopsis thaliana
Arabidopsis thaliana		 young aerial structure Arabidopsis seedlings (WT) without elicitor treatment Chitin oligosaccharide treated Arabidopsis seedlings (WT)
2 GSM237899 Arabidopsis seedlings (WT) with/without elicitor treatment (color swap) 39,941 Meiji University 2007-10-17 [MPSS] Agilent-012600 Arabidopsis 3 Oligo Microarray (4142A (Feature Number version) (GPL2871) RNA Arabidopsis thaliana
Arabidopsis thaliana		 young aerial structure Chitin oligosaccharide treated Arabidopsis seedlings (WT) Arabidopsis seedlings (WT) without elicitor treatment
3 GSM237900 Arabidopsis mutant seedlings (cerk1) with/without elicitor treatment 39,941 Meiji University 2007-10-17 [MPSS] Agilent-012600 Arabidopsis 3 Oligo Microarray (4142A (Feature Number version) (GPL2871) RNA Arabidopsis thaliana
Arabidopsis thaliana		 young aerial structure Arabidopsis mutant seedlings (cerk1) without elicitor treatment Chitin oligosaccharide treated Arabidopsis mutant seedlings (cerk1)
4 GSM237901 Arabidopsis mutant seedlings (cerk1) with/without elicitor treatment (color swap) 39,941 Meiji University 2007-10-17 [MPSS] Agilent-012600 Arabidopsis 3 Oligo Microarray (4142A (Feature Number version) (GPL2871) RNA Arabidopsis thaliana
Arabidopsis thaliana		 young aerial structure Chitin oligosaccharide treated Arabidopsis mutant seedlings (cerk1) Arabidopsis mutant seedlings (cerk1) without elicitor treatment
5 GSM241585 sdg4 open flowers replicate 1 39,102 RIKEN 2007-11-07 [MPSS] Agilent-015059 Arabidopsis 3 Oligo Microarray 4x44K G2519F (Feature Number version) (GPL6177) RNA Arabidopsis thaliana
Arabidopsis thaliana		 other flower/sexual organ Total RNA from wild type open flowers Total RNA from sdg4 open flowers
6 GSM241586 sdg4 open flowers replicate 2 39,102 RIKEN 2007-11-07 [MPSS] Agilent-015059 Arabidopsis 3 Oligo Microarray 4x44K G2519F (Feature Number version) (GPL6177) RNA Arabidopsis thaliana
Arabidopsis thaliana		 other flower/sexual organ Total RNA from wild type open flowers Total RNA from sdg4 open flowers
7 GSM364178 GUS-transgenic Arabidopsis 39,102 The University of Tokyo 2009-01-24 [MPSS] Agilent-015059 Arabidopsis 3 Oligo Microarray 4x44K G2519F (Feature Number version) (GPL6177) RNA Arabidopsis thaliana
Arabidopsis thaliana		 unclassified source_name:GUS-transgenic Arabidopsis title:GUS-transgenic Arabidopsis description:Total RNA was isolated from GUS-transgenic plant with ISOGEN (Nippon Gene), and used for the preparation of Cy3-labeled cRNA probes. Samples were subjected to microarray experiments using an Agilent Arabidopsis 3 (4 × 44K) Oligo Microarray (Agilent Technologies). All microarray experiments were performed according to the supplier’s manual. The slides were scanned with a Microarray Scanner (Agilent Technologies) at a 5-μm resolution.
8 GSM364179 PAM765-transgenic Arabidopsis 39,102 The University of Tokyo 2009-01-24 [MPSS] Agilent-015059 Arabidopsis 3 Oligo Microarray 4x44K G2519F (Feature Number version) (GPL6177) RNA Arabidopsis thaliana
Arabidopsis thaliana		 unclassified source_name:PAM765-transgenic Arabidopsis title:PAM765-transgenic Arabidopsis description:PAM765 encodes the secretory protein of Candidatus Phytoplasma asteris. Total RNA was isolated from PAM765-transgenic plant with ISOGEN (Nippon Gene), and used for the preparation of Cy3-labeled cRNA probes. Samples were subjected to microarray experiments using an Agilent Arabidopsis 3 (4 × 44K) Oligo Microarray (Agilent Technologies). All microarray experiments were performed according to the supplier’s manual. The slides were scanned with a Microarray Scanner (Agilent Technologies) at a 5-μm resolution.
9 GSM364180 PAM765-transgenic Arabidopsis (sample No2) 39,102 The University of Tokyo 2009-01-24 [MPSS] Agilent-015059 Arabidopsis 3 Oligo Microarray 4x44K G2519F (Feature Number version) (GPL6177) RNA Arabidopsis thaliana
Arabidopsis thaliana		 unclassified source_name:PAM765-transgenic Arabidopsis title:PAM765-transgenic Arabidopsis (sample No2) description:PAM765 encodes the secretory protein of Candidatus Phytoplasma asteris. Total RNA was isolated from PAM765-transgenic plant with ISOGEN (Nippon Gene), and used for the preparation of Cy3-labeled cRNA probes. Samples were subjected to microarray experiments using an Agilent Arabidopsis 3 (4 × 44K) Oligo Microarray (Agilent Technologies). All microarray experiments were performed according to the supplier’s manual. The slides were scanned with a Microarray Scanner (Agilent Technologies) at a 5-μm resolution.
10 GSM364181 PAM765-transgenic Arabidopsis (sample No3) 39,102 The University of Tokyo 2009-01-24 [MPSS] Agilent-015059 Arabidopsis 3 Oligo Microarray 4x44K G2519F (Feature Number version) (GPL6177) RNA Arabidopsis thaliana
Arabidopsis thaliana		 unclassified source_name:PAM765-transgenic Arabidopsis title:PAM765-transgenic Arabidopsis (sample No3) description:PAM765 encodes the secretory protein of Candidatus Phytoplasma asteris. Total RNA was isolated from PAM765-transgenic plant with ISOGEN (Nippon Gene), and used for the preparation of Cy3-labeled cRNA probes. Samples were subjected to microarray experiments using an Agilent Arabidopsis 3 (4 × 44K) Oligo Microarray (Agilent Technologies). All microarray experiments were performed according to the supplier’s manual. The slides were scanned with a Microarray Scanner (Agilent Technologies) at a 5-μm resolution.
11 GSM364182 GUS-transgenic Arabidopsis (sample No2) 39,102 The University of Tokyo 2009-01-24 [MPSS] Agilent-015059 Arabidopsis 3 Oligo Microarray 4x44K G2519F (Feature Number version) (GPL6177) RNA Arabidopsis thaliana
Arabidopsis thaliana		 unclassified source_name:GUS-transgenic Arabidopsis title:GUS-transgenic Arabidopsis (sample No2) description:Total RNA was isolated from PAM765-transgenic plant with ISOGEN (Nippon Gene), and used for the preparation of Cy3-labeled cRNA probes. Samples were subjected to microarray experiments using an Agilent Arabidopsis 3 (4 × 44K) Oligo Microarray (Agilent Technologies). All microarray experiments were performed according to the supplier’s manual. The slides were scanned with a Microarray Scanner (Agilent Technologies) at a 5-μm resolution.
12 GSM364183 GUS-transgenic Arabidopsis (sample No3) 39,102 The University of Tokyo 2009-01-24 [MPSS] Agilent-015059 Arabidopsis 3 Oligo Microarray 4x44K G2519F (Feature Number version) (GPL6177) RNA Arabidopsis thaliana
Arabidopsis thaliana		 unclassified source_name:GUS-transgenic Arabidopsis title:GUS-transgenic Arabidopsis (sample No3) description:Total RNA was isolated from PAM765-transgenic plant with ISOGEN (Nippon Gene), and used for the preparation of Cy3-labeled cRNA probes. Samples were subjected to microarray experiments using an Agilent Arabidopsis 3 (4 × 44K) Oligo Microarray (Agilent Technologies). All microarray experiments were performed according to the supplier’s manual. The slides were scanned with a Microarray Scanner (Agilent Technologies) at a 5-μm resolution.
13 GSM366982 35S:mutHSFB1 vs wild type #1 39,102 National Institute of Advanced Industrial Science and Technology 2009-02-03 [MPSS] Agilent-015059 Arabidopsis 3 Oligo Microarray 4x44K G2519F (Feature Number version) (GPL6177) RNA Arabidopsis thaliana
Arabidopsis thaliana		 root wild-type root 35S:mutHSFB1 root
14 GSM366983 35S:mutHSFB1 vs wild type #2 39,102 National Institute of Advanced Industrial Science and Technology 2009-02-03 [MPSS] Agilent-015059 Arabidopsis 3 Oligo Microarray 4x44K G2519F (Feature Number version) (GPL6177) RNA Arabidopsis thaliana
Arabidopsis thaliana		 root 35S:mutHSFB1 root wild-type root
15 GSM366992 35S:mutHSFB1 vs wild type #3 39,102 National Institute of Advanced Industrial Science and Technology 2009-02-03 [MPSS] Agilent-015059 Arabidopsis 3 Oligo Microarray 4x44K G2519F (Feature Number version) (GPL6177) RNA Arabidopsis thaliana
Arabidopsis thaliana		 root 35S:mutHSFB1 root wild-type root
16 GSM366993 35S:HSFB1 vs wild type #1 39,102 National Institute of Advanced Industrial Science and Technology 2009-02-04 [MPSS] Agilent-015059 Arabidopsis 3 Oligo Microarray 4x44K G2519F (Feature Number version) (GPL6177) RNA Arabidopsis thaliana
Arabidopsis thaliana		 root wild-type root 35S:HSFB1 root
17 GSM366994 35S:HSFB1 vs wild type #2 39,102 National Institute of Advanced Industrial Science and Technology 2009-02-04 [MPSS] Agilent-015059 Arabidopsis 3 Oligo Microarray 4x44K G2519F (Feature Number version) (GPL6177) RNA Arabidopsis thaliana
Arabidopsis thaliana		 root 35S:HSFB1 root wild-type root
18 GSM366995 35S:HSFB1 vs wild type #3 39,102 National Institute of Advanced Industrial Science and Technology 2009-02-04 [MPSS] Agilent-015059 Arabidopsis 3 Oligo Microarray 4x44K G2519F (Feature Number version) (GPL6177) RNA Arabidopsis thaliana
Arabidopsis thaliana		 root 35S:HSFB1 root wild-type root
19 GSM366996 hsfb1 hsfb2b double knockout vs wild type #1 39,102 National Institute of Advanced Industrial Science and Technology 2009-02-04 [MPSS] Agilent-015059 Arabidopsis 3 Oligo Microarray 4x44K G2519F (Feature Number version) (GPL6177) RNA Arabidopsis thaliana
Arabidopsis thaliana		 young aerial structure wild-type seedling hsfb1 hsfb2b seedling
20 GSM366997 hsfb1 hsfb2b double knockout vs wild type #2 39,102 National Institute of Advanced Industrial Science and Technology 2009-02-04 [MPSS] Agilent-015059 Arabidopsis 3 Oligo Microarray 4x44K G2519F (Feature Number version) (GPL6177) RNA Arabidopsis thaliana
Arabidopsis thaliana		 young aerial structure hsfb1 hsfb2b seedling wild-type seedling
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