Gene Expression Omnibus (GEO) Overview Version:2013-04-06Japanese page
An overview of the GEO entries broken down by the measurement platforms and the features of the measured samples.

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Data Unit : [ DataSet / Sample / Platform ] Show explanation>> <<Hide explanation
DataSet : Series(GSE) x Platform(GPL). A set of related gene expression data.
Sample : Biological materials.
platform : Methods or instruments used for the gene expression profilings.
The numbers shown in the tabs are the numbers of the data (series, samples or platforms) belonging to the groups.
  Human
(502,421)
  Primates
(4,928)
  Rodents
(181,106)
  Mammals
(16,260)
  Vertebrates
(18,263)
  Invertebrates
(37,338)
  Plants
(91,454)
  Bacteria
(39,082)
  Viruses
(1,266)
  Phages
(101)
  Unclassified
(5,242)
  All
(898,944)
 
  SAGE NlaIII
(1,683)
  SAGE RsaI
(3)
  SAGE Sau3A
(54)
  MPSS
(439)
  GeneChip
(377,145)
  Tiling Array
(21,846)
  cDNA Array
(103,476)
  Oligo Array
(239,584)
  Bead Array
(106,999)
  Protein Array
(5)
  Antibody
(1,152)
  RT-PCR
(3,959)
  HT-Seq
(35,574)
  Other
(6,909)
  All
(898,944)
 
  brain
(35)
  blood
(13)
  connective
(10)
  reproductive
(12)
  muscular
(7)
  digestive
(10)
  liver
(6)
  lung
(4)
  urinary
(5)
  endo/exo-crine
(13)
  embryo
(3)
  adult aerial structure
(49)
  young aerial structure
(85)
  root
(0)
  meristem/growing tissue
(0)
  flower/sexual organ
(0)
  seed/fruit/grain
(0)
  pooled
(20)
  unclassified
(97)
  all
(439)
 
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Sample ID Title Number of Data Institute Submission date Platform Sample type Species Organ class Reasoning of the classification
Keywords used for the classification are shown with bold font.
1 GSM170917 FLR library 118,998 University of Delaware 2007-02-22 [MPSS] Rice small RNA MPSS signatures (GPL3776) MPSS Oryza sativa
Oryza sativa
other flower/sexual organ Nipponbare Immature panicles- 90 days old plants
2 GSM302812 xue_rice_seed_MPSS 111,161 Institute of Plant Physiology and Ecology,Shanghai Institutes for Biological Sciences 2008-07-02 [MPSS] IPPE Rice MPSS (GPL7013) MPSS Oryza sativa
Oryza sativa
other seed/fruit/grain rice seed small RNA
3 GSM170921 STM library 57,101 University of Delaware 2007-02-22 [MPSS] Rice small RNA MPSS signatures (GPL3776) MPSS Oryza sativa
Oryza sativa
other adult aerial structure Stem
4 GSM265799 UNT library 52,928 University of Delaware 2008-02-13 [MPSS] Rice small RNA MPSS signatures (GPL3776) MPSS Oryza sativa
Oryza sativa
young aerial structure Seedling control for ABA treatment
5 GSM170901 NL4 library 48,664 University of Delaware 2007-02-22 [MPSS] Rice mRNA MPSS signatures (GPL3777) MPSS Oryza sativa
Oryza sativa
leaf Mature Leaf - Combination of Replicates
6 GSM170904 NR2 library 42,103 University of Delaware 2007-02-22 [MPSS] Rice mRNA MPSS signatures (GPL3777) MPSS Oryza sativa
Oryza sativa
root 60 days Mature Root - Combination of Replicates
7 GSM169568 NDR library 34,164 University of Delaware 2007-02-20 [MPSS] Rice mRNA MPSS signatures (GPL3777) MPSS Oryza sativa
Oryza sativa
root 14 days rice young root stressed in drought for 5days
8 GSM265798 ABA library 33,389 University of Delaware 2008-02-13 [MPSS] Rice small RNA MPSS signatures (GPL3776) MPSS Oryza sativa
Oryza sativa
young aerial structure Seedlings treated with ABA
9 GSM170919 SNU library 33,115 University of Delaware 2007-02-22 [MPSS] Rice small RNA MPSS signatures (GPL3776) MPSS Oryza sativa
Oryza sativa
young aerial structure Germinating seedlings
10 GSM170907 NSR library 32,545 University of Delaware 2007-02-22 [MPSS] Rice mRNA MPSS signatures (GPL3777) MPSS Oryza sativa
Oryza sativa
root 14 days - Young roots stressed in 250 mM NaCl for 24h
11 GSM169567 NDL library 32,099 University of Delaware 2007-02-20 [MPSS] Rice mRNA MPSS signatures (GPL3777) MPSS Oryza sativa
Oryza sativa
leaf 14 days rice young leaf stressed in drought for 5days
12 GSM265797 SNM library 30,864 University of Delaware 2008-02-13 [MPSS] Rice small RNA MPSS signatures (GPL3776) MPSS Oryza sativa
Oryza sativa
young aerial structure Germinating seedlings infected with Magnaporthe grisea (strain 70-15)]
13 GSM169564 NCL library 30,775 University of Delaware 2007-02-20 [MPSS] Rice mRNA MPSS signatures (GPL3777) MPSS Oryza sativa
Oryza sativa
leaf 14 days rice young leaf stressed in 4C cold for 24 hrs
14 GSM170905 NSL library 30,587 University of Delaware 2007-02-22 [MPSS] Rice mRNA MPSS signatures (GPL3777) MPSS Oryza sativa
Oryza sativa
leaf 14 days - Young leaves stressed in 250 mM NaCl for 24h
15 GSM170912 NYL library 28,870 University of Delaware 2007-02-22 [MPSS] Rice mRNA MPSS signatures (GPL3777) MPSS Oryza sativa
Oryza sativa
leaf 14 days - Young leaves
16 GSM170902 NME library 28,818 University of Delaware 2007-02-22 [MPSS] Rice mRNA MPSS signatures (GPL3777) MPSS Oryza sativa
Oryza sativa
pooled 60 days - Crown vegetative meristematic tissue
17 GSM170900 NIP library 28,759 University of Delaware 2007-02-22 [MPSS] Rice mRNA MPSS signatures (GPL3777) MPSS Oryza sativa
Oryza sativa
other flower/sexual organ 90 days - Immature panicle
18 GSM170906 NSO library 28,461 University of Delaware 2007-02-22 [MPSS] Rice mRNA MPSS signatures (GPL3777) MPSS Oryza sativa
Oryza sativa
ovary Ovary and mature stigma
19 GSM170914 NYR library 27,551 University of Delaware 2007-02-22 [MPSS] Rice mRNA MPSS signatures (GPL3777) MPSS Oryza sativa
Oryza sativa
root 14 days - Young Roots
20 GSM169562 NCA library 27,497 University of Delaware 2007-02-20 [MPSS] Rice mRNA MPSS signatures (GPL3777) MPSS Oryza sativa
Oryza sativa
callus 35 days old rice callus
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