Gene Expression Omnibus (GEO) Overview Version´╝Ü2014-04-12Japanese page
An overview of the GEO entries broken down by the measurement platforms and the features of the measured samples.
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Data Unit : [ DataSet / Sample / Platform ] Show explanation>> <<Hide explanation
DataSet : Series(GSE) x Platform(GPL). A set of related gene expression data.
Sample : Biological materials.
platform : Methods or instruments used for the gene expression profilings.
The numbers shown in the tabs are the numbers of the data (series, samples or platforms) belonging to the groups.
  Human
(615,734)
  Primates
(5,814)
  Rodents
(225,055)
  Mammals
(20,968)
  Vertebrates
(22,581)
  Invertebrates
(46,584)
  Plants
(107,706)
  Bacteria
(45,091)
  Viruses
(1,432)
  Phages
(112)
  Unclassified
(6,986)
  All
(1,101,311)
 
  SAGE NlaIII
(1,697)
  SAGE RsaI
(3)
  SAGE Sau3A
(54)
  MPSS
(507)
  GeneChip
(441,758)
  Tiling Array
(24,730)
  cDNA Array
(109,124)
  Oligo Array
(288,250)
  Bead Array
(148,432)
  Protein Array
(5)
  Antibody
(1,287)
  RT-PCR
(6,509)
  HT-Seq
(64,850)
  Other
(13,899)
  All
(1,101,311)
 
  brain
(37)
  blood
(13)
  connective
(10)
  reproductive
(12)
  muscular
(7)
  digestive
(10)
  liver
(6)
  lung
(4)
  urinary
(5)
  endo/exo-crine
(13)
  embryo
(3)
  adult aerial structure
(49)
  young aerial structure
(121)
  root
(36)
  meristem/growing tissue
(36)
  flower/sexual organ
(15)
  seed/fruit/grain
(3)
  pooled
(26)
  unclassified
(101)
  all
(507)
 
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Sample ID Title Number of Data Institute Submission date Platform Sample type Species Organ class Reasoning of the classification
Keywords used for the classification are shown with bold font.
1 GSM177173 tdt-1_3days_rep1 37,685 University of Utah 2007-03-23 [MPSS] Agilent-012600 Arabidopsis 3 Oligo Microarray (4142A (Feature Number version) (GPL2871) RNA Arabidopsis thaliana
Arabidopsis thaliana
young aerial structure wild type, whole seedlings, 3 days tdt-1, whole seedlings, 3 days
2 GSM177174 tdt-1_3days_rep2 37,685 University of Utah 2007-03-23 [MPSS] Agilent-012600 Arabidopsis 3 Oligo Microarray (4142A (Feature Number version) (GPL2871) RNA Arabidopsis thaliana
Arabidopsis thaliana
young aerial structure wild type, whole seedlings, 3 days tdt-1, whole seedlings, 3 days
3 GSM177205 tdt-1_3days_rep3 37,685 University of Utah 2007-03-23 [MPSS] Agilent-012600 Arabidopsis 3 Oligo Microarray (4142A (Feature Number version) (GPL2871) RNA Arabidopsis thaliana
Arabidopsis thaliana
young aerial structure tdt-1, whole seedlings, 3 days wild type, whole seedlings, 3 days
4 GSM1005117 Wild type Magnesium chloride infiltrated vs Pseudomonas syringae infected. Replicate 1 39,102 University of Turin 2012-09-17 [MPSS] Agilent-015059 Arabidopsis 3 Oligo Microarray 4x44K G2519F (Feature Number version) (GPL6177) RNA Arabidopsis thaliana
Arabidopsis thaliana
leaf WT rosette leaves Magnesium chloride infiltrated WT rosette leaves Pseudomonas syringae infected
5 GSM1005118 Wild type Magnesium chloride infiltrated vs Pseudomonas syringae infected. Replicate 2 39,102 University of Turin 2012-09-17 [MPSS] Agilent-015059 Arabidopsis 3 Oligo Microarray 4x44K G2519F (Feature Number version) (GPL6177) RNA Arabidopsis thaliana
Arabidopsis thaliana
leaf WT rosette leaves Magnesium chloride infiltrated WT rosette leaves Pseudomonas syringae infected
6 GSM1005119 Wild type Magnesium chloride infiltrated vs Pseudomonas syringae infected. Replicate 3 39,102 University of Turin 2012-09-17 [MPSS] Agilent-015059 Arabidopsis 3 Oligo Microarray 4x44K G2519F (Feature Number version) (GPL6177) RNA Arabidopsis thaliana
Arabidopsis thaliana
leaf WT rosette leaves Magnesium chloride infiltrated WT rosette leaves Pseudomonas syringae infected
7 GSM1005120 Wild type Magnesium chloride infiltrated vs Pseudomonas syringae infected. Replicate 4 39,102 University of Turin 2012-09-17 [MPSS] Agilent-015059 Arabidopsis 3 Oligo Microarray 4x44K G2519F (Feature Number version) (GPL6177) RNA Arabidopsis thaliana
Arabidopsis thaliana
leaf WT rosette leaves Magnesium chloride infiltrated WT rosette leaves Pseudomonas syringae infected
8 GSM1005121 Wild type mechanical damage vs herbivore wounding Replicate 1 39,102 University of Turin 2012-09-17 [MPSS] Agilent-015059 Arabidopsis 3 Oligo Microarray 4x44K G2519F (Feature Number version) (GPL6177) RNA Arabidopsis thaliana
Arabidopsis thaliana
leaf WT rosette leaves mechanical damaged WT rosette leaves herbivore wounded
9 GSM1005122 Wild type mechanical damage vs herbivore wounding Replicate 2 39,102 University of Turin 2012-09-17 [MPSS] Agilent-015059 Arabidopsis 3 Oligo Microarray 4x44K G2519F (Feature Number version) (GPL6177) RNA Arabidopsis thaliana
Arabidopsis thaliana
leaf WT rosette leaves mechanical damaged WT rosette leaves herbivore wounded
10 GSM1005123 Wild type mechanical damage vs herbivore wounding Replicate 3 39,102 University of Turin 2012-09-17 [MPSS] Agilent-015059 Arabidopsis 3 Oligo Microarray 4x44K G2519F (Feature Number version) (GPL6177) RNA Arabidopsis thaliana
Arabidopsis thaliana
leaf WT rosette leaves mechanical damaged WT rosette leaves herbivore wounded
11 GSM1005124 Wild type mechanical damage vs herbivore wounding Replicate 4 39,102 University of Turin 2012-09-17 [MPSS] Agilent-015059 Arabidopsis 3 Oligo Microarray 4x44K G2519F (Feature Number version) (GPL6177) RNA Arabidopsis thaliana
Arabidopsis thaliana
leaf WT rosette leaves mechanical damaged WT rosette leaves herbivore wounded
12 GSM1005125 Wild type mechanical damaged vs Myzus persicae feeding. Replicate 1 39,102 University of Turin 2012-09-17 [MPSS] Agilent-015059 Arabidopsis 3 Oligo Microarray 4x44K G2519F (Feature Number version) (GPL6177) RNA Arabidopsis thaliana
Arabidopsis thaliana
leaf WT rosette leaves mechanical damaged WT rosette leaves aphid wounded
13 GSM1005126 Wild type mechanical damaged vs Myzus persicae feeding. Replicate 2 39,102 University of Turin 2012-09-17 [MPSS] Agilent-015059 Arabidopsis 3 Oligo Microarray 4x44K G2519F (Feature Number version) (GPL6177) RNA Arabidopsis thaliana
Arabidopsis thaliana
leaf WT rosette leaves mechanical damaged WT rosette leaves aphid wounded
14 GSM1005127 Wild type mechanical damaged vs Myzus persicae feeding. Replicate 3 39,102 University of Turin 2012-09-17 [MPSS] Agilent-015059 Arabidopsis 3 Oligo Microarray 4x44K G2519F (Feature Number version) (GPL6177) RNA Arabidopsis thaliana
Arabidopsis thaliana
leaf WT rosette leaves mechanical damaged WT rosette leaves aphid wounded
15 GSM1005128 Wild type mechanical damaged vs Myzus persicae feeding. Replicate 4 39,102 University of Turin 2012-09-17 [MPSS] Agilent-015059 Arabidopsis 3 Oligo Microarray 4x44K G2519F (Feature Number version) (GPL6177) RNA Arabidopsis thaliana
Arabidopsis thaliana
leaf WT rosette leaves mechanical damaged WT rosette leaves aphid wounded
16 GSM1059954 SACMV-[ZA:99]-infected vs control_14 dpi 37,478 University of the Witswatersrand 2013-01-04 [MPSS] Agilent-015059 Arabidopsis 3 Oligo Microarray 4x44K G2519F (Probe Name version) (GPL7299) RNA Arabidopsis thaliana
Arabidopsis thaliana
leaf [infection] Apical leaf tissue [control] Apical leaf tissue
17 GSM1059955 SACMV-[ZA:99]-infected vs control_24 dpi 37,478 University of the Witswatersrand 2013-01-04 [MPSS] Agilent-015059 Arabidopsis 3 Oligo Microarray 4x44K G2519F (Probe Name version) (GPL7299) RNA Arabidopsis thaliana
Arabidopsis thaliana
leaf [infection] Apical leaf tissue [control] Apical leaf tissue
18 GSM1059956 SACMV-[ZA:99]-infected vs control_36 dpi 37,478 University of the Witswatersrand 2013-01-04 [MPSS] Agilent-015059 Arabidopsis 3 Oligo Microarray 4x44K G2519F (Probe Name version) (GPL7299) RNA Arabidopsis thaliana
Arabidopsis thaliana
leaf [infection] Apical leaf tissue [control] Apical leaf tissue
19 GSM736640 transgenic line A vs. Wild type, 4 weeks, rep 1 tech rep 1 37,685 University of Pretoria 2011-06-02 [MPSS] Agilent-015059 Arabidopsis 3 Oligo Microarray 4x44K G2519F (Feature Number version) (GPL6177) RNA Arabidopsis thaliana
Arabidopsis thaliana
unclassified source_name:transgenic line A, 4 weeks wild type, 4 weeks title:transgenic line A vs. Wild type, 4 weeks, rep 1 tech rep 1 description:Biological rep 1
20 GSM736641 transgenic line A vs. Wild type, 4 weeks, rep 1 tech rep 2 37,685 University of Pretoria 2011-06-02 [MPSS] Agilent-015059 Arabidopsis 3 Oligo Microarray 4x44K G2519F (Feature Number version) (GPL6177) RNA Arabidopsis thaliana
Arabidopsis thaliana
unclassified source_name:transgenic line A, 4 weeks wild type, 4 weeks title:transgenic line A vs. Wild type, 4 weeks, rep 1 tech rep 2 description:Biological rep 1
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