Gene Expression Omnibus (GEO) Overview

DataSet	:	Series(GSE) x Platform(GPL). A set of related gene expression data.
Sample	:	Biological materials.
platform	:	Methods or instruments used for the gene expression profilings.

All
(898,944)

SAGE NlaIII
(1,683)

SAGE RsaI
(3)

SAGE Sau3A
(54)

MPSS
(439)

GeneChip
(377,145)

Tiling Array
(21,846)

cDNA Array
(103,476)

Oligo Array
(239,584)

adult aerial structure
(49)

young aerial structure
(85)

root
(32)

meristem/growing tissue
(26)

flower/sexual organ
(9)

seed/fruit/grain
(3)

pooled
(20)

unclassified
(97)

all
(439)

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	Sample ID	Title	Number of Data	Institute	Submission date	Platform	Sample type	Species	Organ class	Reasoning of the classification Keywords used for the classification are shown with bold font.
1	GSM177173	tdt-1_3days_rep1	37,685	University of Utah	2007-03-23	[MPSS] Agilent-012600 Arabidopsis 3 Oligo Microarray (4142A (Feature Number version) (GPL2871)	RNA	Arabidopsis thaliana	young aerial structure	wild type, whole seedlings, 3 days tdt-1, whole seedlings, 3 days
2	GSM177174	tdt-1_3days_rep2	37,685	University of Utah	2007-03-23	[MPSS] Agilent-012600 Arabidopsis 3 Oligo Microarray (4142A (Feature Number version) (GPL2871)	RNA	Arabidopsis thaliana	young aerial structure	wild type, whole seedlings, 3 days tdt-1, whole seedlings, 3 days
3	GSM177205	tdt-1_3days_rep3	37,685	University of Utah	2007-03-23	[MPSS] Agilent-012600 Arabidopsis 3 Oligo Microarray (4142A (Feature Number version) (GPL2871)	RNA	Arabidopsis thaliana	young aerial structure	tdt-1, whole seedlings, 3 days wild type, whole seedlings, 3 days
4	GSM1005117	Wild type Magnesium chloride infiltrated vs Pseudomonas syringae infected. Replicate 1	39,102	University of Turin	2012-09-17	[MPSS] Agilent-015059 Arabidopsis 3 Oligo Microarray 4x44K G2519F (Feature Number version) (GPL6177)	RNA	Arabidopsis thaliana	leaf	WT rosette leaves Magnesium chloride infiltrated WT rosette leaves Pseudomonas syringae infected
5	GSM1005118	Wild type Magnesium chloride infiltrated vs Pseudomonas syringae infected. Replicate 2	39,102	University of Turin	2012-09-17	[MPSS] Agilent-015059 Arabidopsis 3 Oligo Microarray 4x44K G2519F (Feature Number version) (GPL6177)	RNA	Arabidopsis thaliana	leaf	WT rosette leaves Magnesium chloride infiltrated WT rosette leaves Pseudomonas syringae infected
6	GSM1005119	Wild type Magnesium chloride infiltrated vs Pseudomonas syringae infected. Replicate 3	39,102	University of Turin	2012-09-17	[MPSS] Agilent-015059 Arabidopsis 3 Oligo Microarray 4x44K G2519F (Feature Number version) (GPL6177)	RNA	Arabidopsis thaliana	leaf	WT rosette leaves Magnesium chloride infiltrated WT rosette leaves Pseudomonas syringae infected
7	GSM1005120	Wild type Magnesium chloride infiltrated vs Pseudomonas syringae infected. Replicate 4	39,102	University of Turin	2012-09-17	[MPSS] Agilent-015059 Arabidopsis 3 Oligo Microarray 4x44K G2519F (Feature Number version) (GPL6177)	RNA	Arabidopsis thaliana	leaf	WT rosette leaves Magnesium chloride infiltrated WT rosette leaves Pseudomonas syringae infected
8	GSM1005121	Wild type mechanical damage vs herbivore wounding Replicate 1	39,102	University of Turin	2012-09-17	[MPSS] Agilent-015059 Arabidopsis 3 Oligo Microarray 4x44K G2519F (Feature Number version) (GPL6177)	RNA	Arabidopsis thaliana	leaf	WT rosette leaves mechanical damaged WT rosette leaves herbivore wounded
9	GSM1005122	Wild type mechanical damage vs herbivore wounding Replicate 2	39,102	University of Turin	2012-09-17	[MPSS] Agilent-015059 Arabidopsis 3 Oligo Microarray 4x44K G2519F (Feature Number version) (GPL6177)	RNA	Arabidopsis thaliana	leaf	WT rosette leaves mechanical damaged WT rosette leaves herbivore wounded
10	GSM1005123	Wild type mechanical damage vs herbivore wounding Replicate 3	39,102	University of Turin	2012-09-17	[MPSS] Agilent-015059 Arabidopsis 3 Oligo Microarray 4x44K G2519F (Feature Number version) (GPL6177)	RNA	Arabidopsis thaliana	leaf	WT rosette leaves mechanical damaged WT rosette leaves herbivore wounded
11	GSM1005124	Wild type mechanical damage vs herbivore wounding Replicate 4	39,102	University of Turin	2012-09-17	[MPSS] Agilent-015059 Arabidopsis 3 Oligo Microarray 4x44K G2519F (Feature Number version) (GPL6177)	RNA	Arabidopsis thaliana	leaf	WT rosette leaves mechanical damaged WT rosette leaves herbivore wounded
12	GSM1005125	Wild type mechanical damaged vs Myzus persicae feeding. Replicate 1	39,102	University of Turin	2012-09-17	[MPSS] Agilent-015059 Arabidopsis 3 Oligo Microarray 4x44K G2519F (Feature Number version) (GPL6177)	RNA	Arabidopsis thaliana	leaf	WT rosette leaves mechanical damaged WT rosette leaves aphid wounded
13	GSM1005126	Wild type mechanical damaged vs Myzus persicae feeding. Replicate 2	39,102	University of Turin	2012-09-17	[MPSS] Agilent-015059 Arabidopsis 3 Oligo Microarray 4x44K G2519F (Feature Number version) (GPL6177)	RNA	Arabidopsis thaliana	leaf	WT rosette leaves mechanical damaged WT rosette leaves aphid wounded
14	GSM1005127	Wild type mechanical damaged vs Myzus persicae feeding. Replicate 3	39,102	University of Turin	2012-09-17	[MPSS] Agilent-015059 Arabidopsis 3 Oligo Microarray 4x44K G2519F (Feature Number version) (GPL6177)	RNA	Arabidopsis thaliana	leaf	WT rosette leaves mechanical damaged WT rosette leaves aphid wounded
15	GSM1005128	Wild type mechanical damaged vs Myzus persicae feeding. Replicate 4	39,102	University of Turin	2012-09-17	[MPSS] Agilent-015059 Arabidopsis 3 Oligo Microarray 4x44K G2519F (Feature Number version) (GPL6177)	RNA	Arabidopsis thaliana	leaf	WT rosette leaves mechanical damaged WT rosette leaves aphid wounded
16	GSM1059954	SACMV-[ZA:99]-infected vs control_14 dpi	37,478	University of the Witswatersrand	2013-01-04	[MPSS] Agilent-015059 Arabidopsis 3 Oligo Microarray 4x44K G2519F (Probe Name version) (GPL7299)	RNA	Arabidopsis thaliana	leaf	[infection] Apical leaf tissue [control] Apical leaf tissue
17	GSM1059955	SACMV-[ZA:99]-infected vs control_24 dpi	37,478	University of the Witswatersrand	2013-01-04	[MPSS] Agilent-015059 Arabidopsis 3 Oligo Microarray 4x44K G2519F (Probe Name version) (GPL7299)	RNA	Arabidopsis thaliana	leaf	[infection] Apical leaf tissue [control] Apical leaf tissue
18	GSM1059956	SACMV-[ZA:99]-infected vs control_36 dpi	37,478	University of the Witswatersrand	2013-01-04	[MPSS] Agilent-015059 Arabidopsis 3 Oligo Microarray 4x44K G2519F (Probe Name version) (GPL7299)	RNA	Arabidopsis thaliana	leaf	[infection] Apical leaf tissue [control] Apical leaf tissue
19	GSM736640	transgenic line A vs. Wild type, 4 weeks, rep 1 tech rep 1	37,685	University of Pretoria	2011-06-02	[MPSS] Agilent-015059 Arabidopsis 3 Oligo Microarray 4x44K G2519F (Feature Number version) (GPL6177)	RNA	Arabidopsis thaliana	unclassified	source_name:transgenic line A, 4 weeks wild type, 4 weeks title:transgenic line A vs. Wild type, 4 weeks, rep 1 tech rep 1 description:Biological rep 1
20	GSM736641	transgenic line A vs. Wild type, 4 weeks, rep 1 tech rep 2	37,685	University of Pretoria	2011-06-02	[MPSS] Agilent-015059 Arabidopsis 3 Oligo Microarray 4x44K G2519F (Feature Number version) (GPL6177)	RNA	Arabidopsis thaliana	unclassified	source_name:transgenic line A, 4 weeks wild type, 4 weeks title:transgenic line A vs. Wild type, 4 weeks, rep 1 tech rep 2 description:Biological rep 1

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