Gene Expression Omnibus (GEO) Overview Version：2013-06-15Japanese page
An overview of the GEO entries broken down by the measurement platforms and the features of the measured samples.
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Data Unit : [ DataSet / Sample / Platform ] Show explanation>> <<Hide explanation
DataSet : Series(GSE) x Platform(GPL). A set of related gene expression data.
Sample : Biological materials.
platform : Methods or instruments used for the gene expression profilings.
The numbers shown in the tabs are the numbers of the data (series, samples or platforms) belonging to the groups.
  Human
(6,100)		   Primates
(0)		   Rodents
(968)		   Mammals
(51)		   Vertebrates
(107)		   Invertebrates
(254)		   Plants
(402)		   Bacteria
(343)		   Viruses
(0)		   Phages
(0)		   Unclassified
(46)		   All
(8,303)		  
  SAGE NlaIII
(1)		   SAGE RsaI
(0)		   SAGE Sau3A
(0)		   MPSS
(14)		   GeneChip
(4,366)		   Tiling Array
(101)		   cDNA Array
(1,280)		   Oligo Array
(1,468)		   Bead Array
(515)		   Protein Array
(0)		   Antibody
(0)		   RT-PCR
(444)		   HT-Seq
(114)		   Other
(0)		   All
(8,303)		  
  brain
(0)		   blood
(0)		   connective
(0)		   reproductive
(0)		   muscular
(0)		   digestive
(0)		   liver
(0)		   lung
(0)		   urinary
(0)		   endo/exo-crine
(0)		   embryo
(0)		   adult aerial structure
(0)		   young aerial structure
(0)		   root
(0)		   meristem/growing tissue
(4)		   flower/sexual organ
(0)		   seed/fruit/grain
(0)		   pooled
(0)		   unclassified
(10)		   all
(14)		  
Sample ID Title Number of Data Institute Submission date Platform Sample type Species Organ class Reasoning of the classification
Keywords used for the classification are shown with bold font.
1 GSM495948 WT plants-1h vs 0h HL-Rep1 39,941 Flanders Institute for Biotechnology (VIB) 2010-01-12 [MPSS] Agilent-012600 Arabidopsis 3 Oligo Microarray (4142A (Feature Number version) (GPL2871) RNA Arabidopsis thaliana
Arabidopsis thaliana		 unclassified source_name:WT, 1h HL WT, 0h HL title:WT plants-1h vs 0h HL-Rep1 description:Biological replicate 1 of 2. WT plants subjected to high light, harvested after 0h and 1h.
2 GSM495949 apx1 plants-1h vs 0h HL-Rep1 39,941 Flanders Institute for Biotechnology (VIB) 2010-01-12 [MPSS] Agilent-012600 Arabidopsis 3 Oligo Microarray (4142A (Feature Number version) (GPL2871) RNA Arabidopsis thaliana
Arabidopsis thaliana		 unclassified source_name:apx1, 1h HL apx1, 0h HL title:apx1 plants-1h vs 0h HL-Rep1 description:Biological replicate 1 of 2. apx1 plants subjected to high light, harvested after 0h and 1h.
3 GSM495950 cat2 plants-1h vs 0h HL-Rep1 39,941 Flanders Institute for Biotechnology (VIB) 2010-01-12 [MPSS] Agilent-012600 Arabidopsis 3 Oligo Microarray (4142A (Feature Number version) (GPL2871) RNA Arabidopsis thaliana
Arabidopsis thaliana		 unclassified source_name:cat2,1h HL cat2, 0h HL title:cat2 plants-1h vs 0h HL-Rep1 description:Biological replicate 1 of 2. cat2 plants subjected to high light, harvested after 0h and 1h.
4 GSM495951 apx1/cat2 plants-1h vs 0h HL-Rep1 39,941 Flanders Institute for Biotechnology (VIB) 2010-01-12 [MPSS] Agilent-012600 Arabidopsis 3 Oligo Microarray (4142A (Feature Number version) (GPL2871) RNA Arabidopsis thaliana
Arabidopsis thaliana		 unclassified source_name:apx1/cat2, 1h HL apx1/cat2, 0h HL title:apx1/cat2 plants-1h vs 0h HL-Rep1 description:Biological replicate 1 of 2. apx1/cat2 plants subjected to high light, harvested after 0h and 1h.
5 GSM495952 WT plants-1h vs 0h HL-Rep2 39,941 Flanders Institute for Biotechnology (VIB) 2010-01-12 [MPSS] Agilent-012600 Arabidopsis 3 Oligo Microarray (4142A (Feature Number version) (GPL2871) RNA Arabidopsis thaliana
Arabidopsis thaliana		 unclassified source_name:WT, 0h HL WT, 1h HL title:WT plants-1h vs 0h HL-Rep2 description:Biological replicate 2 of 2. WT plants subjected to high light, harvested after 0h and 1h.
6 GSM495953 apx1 plants-1h vs 0h HL-Rep2 39,941 Flanders Institute for Biotechnology (VIB) 2010-01-12 [MPSS] Agilent-012600 Arabidopsis 3 Oligo Microarray (4142A (Feature Number version) (GPL2871) RNA Arabidopsis thaliana
Arabidopsis thaliana		 unclassified source_name:apx1, 0h HL apx1, 1h HL title:apx1 plants-1h vs 0h HL-Rep2 description:Biological replicate 2 of 2. apx1 plants subjected to high light, harvested after 0h and 1h.
7 GSM495954 cat2 plants-1h vs 0h HL-Rep2 39,941 Flanders Institute for Biotechnology (VIB) 2010-01-12 [MPSS] Agilent-012600 Arabidopsis 3 Oligo Microarray (4142A (Feature Number version) (GPL2871) RNA Arabidopsis thaliana
Arabidopsis thaliana		 unclassified source_name:cat2, 0h HL cat2, 1h HL title:cat2 plants-1h vs 0h HL-Rep2 description:Biological replicate 2 of 2. cat2 plants subjected to high light, harvested after 0h and 1h.
8 GSM495955 apx1/cat2 plants-1h vs 0h HL-Rep2 39,941 Flanders Institute for Biotechnology (VIB) 2010-01-12 [MPSS] Agilent-012600 Arabidopsis 3 Oligo Microarray (4142A (Feature Number version) (GPL2871) RNA Arabidopsis thaliana
Arabidopsis thaliana		 unclassified source_name:apx1/cat2, 0h HL apx1/cat2, 1h HL title:apx1/cat2 plants-1h vs 0h HL-Rep2 description:Biological replicate 2 of 2. apx1/cat2 plants subjected to high light, harvested after 0h and 1h.
9 GSM269646 4553/4555/4557/4559 32,354 Flanders Institute for Biotechnology (VIB) 2008-02-28 [MPSS] Agilent-015059 Arabidopsis 3 Oligo Microarray 4x44K G2519F (Feature Number version) (GPL6177) RNA Arabidopsis thaliana
Arabidopsis thaliana		 unclassified source_name:tfIIs Col-0 title:4553/4555/4557/4559 description:This sample consists of four replicate RNA extractions performed of each genotype using independent pools of plants. tfIIs1#1 (Cy5) vs. Col-0#1 (Cy3) Col-0#2 (Cy5) vs. tfIIs1#2 (Cy3) dye-swap tfIIs1#3 (Cy5) vs. Col-0#3 (Cy3) Col-0#5 (Cy5) vs. tfIIs1#4 (Cy3) dye-swap The data were normalized over all 4 hybridizations to obtain one, single log-ratio(Sample/Reference).
10 GSM460661 6213 32,149 Flanders Institute for Biotechnology (VIB) 2009-10-09 [MPSS] Agilent-015059 Arabidopsis 3 Oligo Microarray 4x44K G2519F (Probe Name version) (GPL7299) RNA Arabidopsis thaliana
Arabidopsis thaliana		 meristem/growing tissue shoot apex _in vitro/LD/stage 1.02_rep a
11 GSM460662 6214 32,149 Flanders Institute for Biotechnology (VIB) 2009-10-09 [MPSS] Agilent-015059 Arabidopsis 3 Oligo Microarray 4x44K G2519F (Probe Name version) (GPL7299) RNA Arabidopsis thaliana
Arabidopsis thaliana		 meristem/growing tissue shoot apex _in vitro/LD/stage 1.02_rep b
12 GSM460663 6215 32,149 Flanders Institute for Biotechnology (VIB) 2009-10-09 [MPSS] Agilent-015059 Arabidopsis 3 Oligo Microarray 4x44K G2519F (Probe Name version) (GPL7299) RNA Arabidopsis thaliana
Arabidopsis thaliana		 meristem/growing tissue shoot apex _in vitro/LD/stage 1.02_rep c
13 GSM460664 6216 32,149 Flanders Institute for Biotechnology (VIB) 2009-10-09 [MPSS] Agilent-015059 Arabidopsis 3 Oligo Microarray 4x44K G2519F (Probe Name version) (GPL7299) RNA Arabidopsis thaliana
Arabidopsis thaliana		 meristem/growing tissue shoot apex _in vitro/LD/stage 1.02_rep d
14 GSM268039 4552/4554/4556/4558 32,139 Flanders Institute for Biotechnology (VIB) 2008-02-26 [MPSS] Agilent-015059 Arabidopsis 3 Oligo Microarray 4x44K G2519F (Feature Number version) (GPL6177) RNA Arabidopsis thaliana
Arabidopsis thaliana		 unclassified source_name:hmgb1 Col-0 title:4552/4554/4556/4558 description:This sample consists of four replicate RNA extractions performed of each genotype using independent pools of plants. hmgb1#1 (Cy5) vs. Col-0#1 (Cy3) Col-0#2 (Cy5) vs. hmgb1#2 (Cy3) dye-swap hmgb1#3 (Cy5) vs. Col-0#3 (Cy3) Col-0#5 (Cy5) vs. hmgb1#4 (Cy3) dye-swap The data were normalized over all 4 hybridizations to obtain one, single log-ratio(Sample/Reference).
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