Gene Expression Omnibus (GEO) Overview

DataSet	:	Series(GSE) x Platform(GPL). A set of related gene expression data.
Sample	:	Biological materials.
platform	:	Methods or instruments used for the gene expression profilings.

All
(898,944)

SAGE NlaIII
(1,683)

SAGE RsaI
(3)

SAGE Sau3A
(54)

MPSS
(439)

GeneChip
(377,145)

Tiling Array
(21,846)

cDNA Array
(103,476)

Oligo Array
(239,584)

adult aerial structure
(49)

young aerial structure
(85)

root
(32)

meristem/growing tissue
(26)

flower/sexual organ
(9)

seed/fruit/grain
(3)

pooled
(20)

unclassified
(97)

all
(439)

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	Sample ID	Title	Number of Data	Institute	Submission date	Platform	Sample type	Species	Organ class	Reasoning of the classification Keywords used for the classification are shown with bold font.
1	GSM302812	xue_rice_seed_MPSS	111,161	Institute of Plant Physiology and Ecology,Shanghai Institutes for Biological Sciences	2008-07-02	[MPSS] IPPE Rice MPSS (GPL7013)	MPSS	Oryza sativa	other seed/fruit/grain	rice seed small RNA
2	GSM425805	WT_NW_biorep3	39,102	UCSD	2009-07-08	[MPSS] Agilent-015059 Arabidopsis 3 Oligo Microarray 4x44K G2519F (Feature Number version) (GPL6177)	RNA	Arabidopsis thaliana	unclassified	source_name:Pooled reference WT NW title:WT_NW_biorep3 description:-
3	GSM425804	WT_NW_biorep2	39,102	UCSD	2009-07-08	[MPSS] Agilent-015059 Arabidopsis 3 Oligo Microarray 4x44K G2519F (Feature Number version) (GPL6177)	RNA	Arabidopsis thaliana	unclassified	source_name:Pooled reference WT NW title:WT_NW_biorep2 description:-
4	GSM425803	WT_NW_biorep1	39,102	UCSD	2009-07-08	[MPSS] Agilent-015059 Arabidopsis 3 Oligo Microarray 4x44K G2519F (Feature Number version) (GPL6177)	RNA	Arabidopsis thaliana	unclassified	source_name:Pooled reference WT NW title:WT_NW_biorep1 description:-
5	GSM425811	WT_90minW_biorep3	39,102	UCSD	2009-07-08	[MPSS] Agilent-015059 Arabidopsis 3 Oligo Microarray 4x44K G2519F (Feature Number version) (GPL6177)	RNA	Arabidopsis thaliana	unclassified	source_name:Pooled reference WT 90minW title:WT_90minW_biorep3 description:-
6	GSM425810	WT_90minW_biorep2	39,102	UCSD	2009-07-08	[MPSS] Agilent-015059 Arabidopsis 3 Oligo Microarray 4x44K G2519F (Feature Number version) (GPL6177)	RNA	Arabidopsis thaliana	unclassified	source_name:Pooled reference WT 90minW title:WT_90minW_biorep2 description:-
7	GSM425809	WT_90minW_biorep1	39,102	UCSD	2009-07-08	[MPSS] Agilent-015059 Arabidopsis 3 Oligo Microarray 4x44K G2519F (Feature Number version) (GPL6177)	RNA	Arabidopsis thaliana	unclassified	source_name:Pooled reference WT 90minW title:WT_90minW_biorep1 description:-
8	GSM425808	WT_30minW_biorep3	39,102	UCSD	2009-07-08	[MPSS] Agilent-015059 Arabidopsis 3 Oligo Microarray 4x44K G2519F (Feature Number version) (GPL6177)	RNA	Arabidopsis thaliana	unclassified	source_name:Pooled reference WT 30minW title:WT_30minW_biorep3 description:-
9	GSM425807	WT_30minW_biorep2	39,102	UCSD	2009-07-08	[MPSS] Agilent-015059 Arabidopsis 3 Oligo Microarray 4x44K G2519F (Feature Number version) (GPL6177)	RNA	Arabidopsis thaliana	unclassified	source_name:Pooled reference WT 30minW title:WT_30minW_biorep2 description:-
10	GSM425806	WT_30minW_biorep1	39,102	UCSD	2009-07-08	[MPSS] Agilent-015059 Arabidopsis 3 Oligo Microarray 4x44K G2519F (Feature Number version) (GPL6177)	RNA	Arabidopsis thaliana	unclassified	source_name:Pooled reference WT 30minW title:WT_30minW_biorep1 description:-
11	GSM609377	wt_14d_seedlings_rep4	37,478	National Institute of Advanced Industrial Science and Technology	2010-10-16	[MPSS] Agilent-015059 Arabidopsis 3 Oligo Microarray 4x44K G2519F (Probe Name version) (GPL7299)	RNA	Arabidopsis thaliana	young aerial structure	wt Col-0 14d seedlings
12	GSM609376	wt_14d_seedlings_rep3	37,478	National Institute of Advanced Industrial Science and Technology	2010-10-16	[MPSS] Agilent-015059 Arabidopsis 3 Oligo Microarray 4x44K G2519F (Probe Name version) (GPL7299)	RNA	Arabidopsis thaliana	young aerial structure	wt Col-0 14d seedlings
13	GSM609375	wt_14d_seedlings_rep2	37,478	National Institute of Advanced Industrial Science and Technology	2010-10-16	[MPSS] Agilent-015059 Arabidopsis 3 Oligo Microarray 4x44K G2519F (Probe Name version) (GPL7299)	RNA	Arabidopsis thaliana	young aerial structure	wt Col-0 14d seedlings
14	GSM609374	wt_14d_seedlings_rep1	37,478	National Institute of Advanced Industrial Science and Technology	2010-10-16	[MPSS] Agilent-015059 Arabidopsis 3 Oligo Microarray 4x44K G2519F (Probe Name version) (GPL7299)	RNA	Arabidopsis thaliana	young aerial structure	wt Col-0 14d seedlings
15	GSM495952	WT plants-1h vs 0h HL-Rep2	39,941	Flanders Institute for Biotechnology (VIB)	2010-01-12	[MPSS] Agilent-012600 Arabidopsis 3 Oligo Microarray (4142A (Feature Number version) (GPL2871)	RNA	Arabidopsis thaliana	unclassified	source_name:WT, 0h HL WT, 1h HL title:WT plants-1h vs 0h HL-Rep2 description:Biological replicate 2 of 2. WT plants subjected to high light, harvested after 0h and 1h.
16	GSM495948	WT plants-1h vs 0h HL-Rep1	39,941	Flanders Institute for Biotechnology (VIB)	2010-01-12	[MPSS] Agilent-012600 Arabidopsis 3 Oligo Microarray (4142A (Feature Number version) (GPL2871)	RNA	Arabidopsis thaliana	unclassified	source_name:WT, 1h HL WT, 0h HL title:WT plants-1h vs 0h HL-Rep1 description:Biological replicate 1 of 2. WT plants subjected to high light, harvested after 0h and 1h.
17	GSM1005128	Wild type mechanical damaged vs Myzus persicae feeding. Replicate 4	39,102	University of Turin	2012-09-17	[MPSS] Agilent-015059 Arabidopsis 3 Oligo Microarray 4x44K G2519F (Feature Number version) (GPL6177)	RNA	Arabidopsis thaliana	leaf	WT rosette leaves mechanical damaged WT rosette leaves aphid wounded
18	GSM1005127	Wild type mechanical damaged vs Myzus persicae feeding. Replicate 3	39,102	University of Turin	2012-09-17	[MPSS] Agilent-015059 Arabidopsis 3 Oligo Microarray 4x44K G2519F (Feature Number version) (GPL6177)	RNA	Arabidopsis thaliana	leaf	WT rosette leaves mechanical damaged WT rosette leaves aphid wounded
19	GSM1005126	Wild type mechanical damaged vs Myzus persicae feeding. Replicate 2	39,102	University of Turin	2012-09-17	[MPSS] Agilent-015059 Arabidopsis 3 Oligo Microarray 4x44K G2519F (Feature Number version) (GPL6177)	RNA	Arabidopsis thaliana	leaf	WT rosette leaves mechanical damaged WT rosette leaves aphid wounded
20	GSM1005125	Wild type mechanical damaged vs Myzus persicae feeding. Replicate 1	39,102	University of Turin	2012-09-17	[MPSS] Agilent-015059 Arabidopsis 3 Oligo Microarray 4x44K G2519F (Feature Number version) (GPL6177)	RNA	Arabidopsis thaliana	leaf	WT rosette leaves mechanical damaged WT rosette leaves aphid wounded

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