Gene Expression Omnibus (GEO) Overview Version:2014-04-12Japanese page
An overview of the GEO entries broken down by the measurement platforms and the features of the measured samples.

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Data Unit : [ DataSet / Sample / Platform ] Show explanation>> <<Hide explanation
DataSet : Series(GSE) x Platform(GPL). A set of related gene expression data.
Sample : Biological materials.
platform : Methods or instruments used for the gene expression profilings.
The numbers shown in the tabs are the numbers of the data (series, samples or platforms) belonging to the groups.
  Human
(615,734)
  Primates
(5,814)
  Rodents
(225,055)
  Mammals
(20,968)
  Vertebrates
(22,581)
  Invertebrates
(46,584)
  Plants
(107,706)
  Bacteria
(45,091)
  Viruses
(1,432)
  Phages
(112)
  Unclassified
(6,986)
  All
(1,101,311)
 
  SAGE NlaIII
(1,697)
  SAGE RsaI
(3)
  SAGE Sau3A
(54)
  MPSS
(507)
  GeneChip
(441,758)
  Tiling Array
(24,730)
  cDNA Array
(109,124)
  Oligo Array
(288,250)
  Bead Array
(148,432)
  Protein Array
(5)
  Antibody
(1,287)
  RT-PCR
(6,509)
  HT-Seq
(64,850)
  Other
(13,899)
  All
(1,101,311)
 
  brain
(37)
  blood
(13)
  connective
(10)
  reproductive
(12)
  muscular
(7)
  digestive
(10)
  liver
(6)
  lung
(4)
  urinary
(5)
  endo/exo-crine
(13)
  embryo
(3)
  adult aerial structure
(49)
  young aerial structure
(121)
  root
(0)
  meristem/growing tissue
(0)
  flower/sexual organ
(0)
  seed/fruit/grain
(0)
  pooled
(26)
  unclassified
(101)
  all
(507)
 
Sample ID Title Number of Data Institute Submission date Platform Sample type Species Organ class Reasoning of the classification
Keywords used for the classification are shown with bold font.
1 GSM241585 sdg4 open flowers replicate 1 39,102 RIKEN 2007-11-07 [MPSS] Agilent-015059 Arabidopsis 3 Oligo Microarray 4x44K G2519F (Feature Number version) (GPL6177) RNA Arabidopsis thaliana
Arabidopsis thaliana
other flower/sexual organ Total RNA from wild type open flowers Total RNA from sdg4 open flowers
2 GSM241586 sdg4 open flowers replicate 2 39,102 RIKEN 2007-11-07 [MPSS] Agilent-015059 Arabidopsis 3 Oligo Microarray 4x44K G2519F (Feature Number version) (GPL6177) RNA Arabidopsis thaliana
Arabidopsis thaliana
other flower/sexual organ Total RNA from wild type open flowers Total RNA from sdg4 open flowers
3 GSM1185250 paps1-1 inflorescences vs WT inflorescences_1 37,478 Universität Potsdam 2013-07-12 [MPSS] Agilent-015059 Arabidopsis 3 Oligo Microarray 4x44K G2519F (Probe Name version) (GPL7299) RNA Arabidopsis thaliana
Arabidopsis thaliana
other flower/sexual organ paps1-1 inflorescences WT inflorescences
4 GSM1185251 paps1-1 inflorescences vs WT inflorescences_2 37,478 Universität Potsdam 2013-07-12 [MPSS] Agilent-015059 Arabidopsis 3 Oligo Microarray 4x44K G2519F (Probe Name version) (GPL7299) RNA Arabidopsis thaliana
Arabidopsis thaliana
other flower/sexual organ paps1-1 inflorescences WT inflorescences
5 GSM1185252 WT inflorescences vs paps1-1 inflorescences_3 37,478 Universität Potsdam 2013-07-12 [MPSS] Agilent-015059 Arabidopsis 3 Oligo Microarray 4x44K G2519F (Probe Name version) (GPL7299) RNA Arabidopsis thaliana
Arabidopsis thaliana
other flower/sexual organ WT inflorescences paps1-1 inflorescences
6 GSM1185253 WT inflorescences vs paps1-1 inflorescences_4 37,478 Universität Potsdam 2013-07-12 [MPSS] Agilent-015059 Arabidopsis 3 Oligo Microarray 4x44K G2519F (Probe Name version) (GPL7299) RNA Arabidopsis thaliana
Arabidopsis thaliana
other flower/sexual organ WT inflorescences paps1-1 inflorescences
7 GSM1212493 wild-type ovules 0 CINVESTAV 2013-08-20 [MPSS] Arabidopsis thaliana MPSS (GPL17594) RNA Arabidopsis thaliana
Arabidopsis thaliana
ovary ovules
8 GSM1212494 sporocyteless ovules 0 CINVESTAV 2013-08-20 [MPSS] Arabidopsis thaliana MPSS (GPL17594) RNA Arabidopsis thaliana
Arabidopsis thaliana
ovary ovules
9 GSM170917 FLR library 118,998 University of Delaware 2007-02-22 [MPSS] Rice small RNA MPSS signatures (GPL3776) MPSS Oryza sativa
Oryza sativa
other flower/sexual organ Nipponbare Immature panicles- 90 days old plants
10 GSM65747 Inflorescence tissues, small RNA MPSS 67,528 University of Delaware 2005-07-26 [MPSS] Small RNA identification in Arabidopsis thaliana using modified MPSS (GPL2675) MPSS Arabidopsis thaliana
Arabidopsis thaliana
other flower/sexual organ Inflorescence tissue
11 GSM65750 Seedlings, small RNA MPSS sets 1 and 2 combined 42,062 University of Delaware 2005-07-26 [MPSS] Small RNA identification in Arabidopsis thaliana using modified MPSS (GPL2675) MPSS Arabidopsis thaliana
Arabidopsis thaliana
other flower/sexual organ Inflorescence tissue
12 GSM170900 NIP library 28,759 University of Delaware 2007-02-22 [MPSS] Rice mRNA MPSS signatures (GPL3777) MPSS Oryza sativa
Oryza sativa
other flower/sexual organ 90 days - Immature panicle
13 GSM170906 NSO library 28,461 University of Delaware 2007-02-22 [MPSS] Rice mRNA MPSS signatures (GPL3777) MPSS Oryza sativa
Oryza sativa
ovary Ovary and mature stigma
14 GSM170903 NPO library 26,582 University of Delaware 2007-02-22 [MPSS] Rice mRNA MPSS signatures (GPL3777) MPSS Oryza sativa
Oryza sativa
anther Mature Pollen
15 GSM120717 rdr2, mixed stage inflorescence small RNA MPSS set 15,325 University of Delaware 2006-07-17 [MPSS] Small RNA identification in Arabidopsis thaliana using modified MPSS (GPL2675) MPSS Arabidopsis thaliana
Arabidopsis thaliana
other flower/sexual organ Inflorescence tissue