Gene Expression Omnibus (GEO) Overview Version：2013-05-25Japanese page
An overview of the GEO entries broken down by the measurement platforms and the features of the measured samples.
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Data Unit : [ DataSet / Sample / Platform ] Show explanation>> <<Hide explanation
DataSet : Series(GSE) x Platform(GPL). A set of related gene expression data.
Sample : Biological materials.
platform : Methods or instruments used for the gene expression profilings.
The numbers shown in the tabs are the numbers of the data (series, samples or platforms) belonging to the groups.
  Human
(516,316)		   Primates
(5,042)		   Rodents
(188,439)		   Mammals
(16,727)		   Vertebrates
(18,617)		   Invertebrates
(38,231)		   Plants
(93,098)		   Bacteria
(39,426)		   Viruses
(1,263)		   Phages
(101)		   Unclassified
(5,385)		   All
(924,376)		  
  SAGE NlaIII
(1,683)		   SAGE RsaI
(3)		   SAGE Sau3A
(54)		   MPSS
(439)		   GeneChip
(387,571)		   Tiling Array
(22,136)		   cDNA Array
(104,070)		   Oligo Array
(246,081)		   Bead Array
(111,089)		   Protein Array
(5)		   Antibody
(1,156)		   RT-PCR
(4,464)		   HT-Seq
(38,248)		   Other
(7,261)		   All
(924,376)		  
  brain
(35)		   blood
(13)		   connective
(10)		   reproductive
(12)		   muscular
(7)		   digestive
(10)		   liver
(6)		   lung
(4)		   urinary
(5)		   endo/exo-crine
(13)		   embryo
(3)		   adult aerial structure
(49)		   young aerial structure
(85)		   root
(32)		   meristem/growing tissue
(26)		   flower/sexual organ
(9)		   seed/fruit/grain
(3)		   pooled
(20)		   unclassified
(97)		   all
(439)		  
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Sample ID Title Number of Data Institute Submission date Platform Sample type Species Organ class Reasoning of the classification
Keywords used for the classification are shown with bold font.
1 GSM413786 ago1-101 vs. Col-0 39,102 Nara Institute of Science and Technology 2009-06-05 [MPSS] Agilent-015059 Arabidopsis 3 Oligo Microarray 4x44K G2519F (Feature Number version) (GPL6177) RNA Arabidopsis thaliana
Arabidopsis thaliana		 meristem/growing tissue Wild-type Col-0 root tip ago1-101 (SALK_035319 ) root tip
2 GSM413787 Col-0 vs. ago1-101 39,102 Nara Institute of Science and Technology 2009-06-05 [MPSS] Agilent-015059 Arabidopsis 3 Oligo Microarray 4x44K G2519F (Feature Number version) (GPL6177) RNA Arabidopsis thaliana
Arabidopsis thaliana		 meristem/growing tissue ago1-101 (SALK_035319 ) root tip Wild-type Col-0 root tip
3 GSM413788 scr-3 vs. Col-0 39,102 Nara Institute of Science and Technology 2009-06-05 [MPSS] Agilent-015059 Arabidopsis 3 Oligo Microarray 4x44K G2519F (Feature Number version) (GPL6177) RNA Arabidopsis thaliana
Arabidopsis thaliana		 meristem/growing tissue Wild-type Col-0 root tip scr-3 root tip
4 GSM413789 Col-0 vs. scr-3 39,102 Nara Institute of Science and Technology 2009-06-05 [MPSS] Agilent-015059 Arabidopsis 3 Oligo Microarray 4x44K G2519F (Feature Number version) (GPL6177) RNA Arabidopsis thaliana
Arabidopsis thaliana		 meristem/growing tissue scr-3 root tip Wild-type Col-0 root tip
5 GSM602675 meristem sample 1 (XMe1) 39,102 Heinrich-Heine-University Duesseldorf 2010-09-30 [MPSS] Agilent-015059 Arabidopsis 3 Oligo Microarray 4x44K G2519F (Feature Number version) (GPL6177) RNA Arabidopsis thaliana
Arabidopsis thaliana		 meristem/growing tissue shoot apical meristem
6 GSM602676 meristem sample 2 (XMe2) 39,102 Heinrich-Heine-University Duesseldorf 2010-09-30 [MPSS] Agilent-015059 Arabidopsis 3 Oligo Microarray 4x44K G2519F (Feature Number version) (GPL6177) RNA Arabidopsis thaliana
Arabidopsis thaliana		 meristem/growing tissue shoot apical meristem
7 GSM539889 35S:WIND1 callus replicate 1 37,478 National Institute of Advanced Industrial Science and Technology 2010-05-03 [MPSS] Agilent-015059 Arabidopsis 3 Oligo Microarray 4x44K G2519F (Probe Name version) (GPL7299) RNA Arabidopsis thaliana
Arabidopsis thaliana		 callus Callus-like Arabidospsis thaliana expressing 35S:WIND1 with no treatment
8 GSM539890 35S:WIND1 callus replicate 2 37,478 National Institute of Advanced Industrial Science and Technology 2010-05-03 [MPSS] Agilent-015059 Arabidopsis 3 Oligo Microarray 4x44K G2519F (Probe Name version) (GPL7299) RNA Arabidopsis thaliana
Arabidopsis thaliana		 callus Callus-like Arabidospsis thaliana expressing 35S:WIND1 with no treatment
9 GSM539891 35S:WIND1 callus replicate 3 37,478 National Institute of Advanced Industrial Science and Technology 2010-05-03 [MPSS] Agilent-015059 Arabidopsis 3 Oligo Microarray 4x44K G2519F (Probe Name version) (GPL7299) RNA Arabidopsis thaliana
Arabidopsis thaliana		 callus Callus-like Arabidospsis thaliana expressing 35S:WIND1 with no treatment
10 GSM539892 T87 callus replicate 1 37,478 National Institute of Advanced Industrial Science and Technology 2010-05-03 [MPSS] Agilent-015059 Arabidopsis 3 Oligo Microarray 4x44K G2519F (Probe Name version) (GPL7299) RNA Arabidopsis thaliana
Arabidopsis thaliana		 callus Callus of T87 cell cultured with MS medium containing 500 nM NAA
11 GSM539893 T87 callus replicate 2 37,478 National Institute of Advanced Industrial Science and Technology 2010-05-03 [MPSS] Agilent-015059 Arabidopsis 3 Oligo Microarray 4x44K G2519F (Probe Name version) (GPL7299) RNA Arabidopsis thaliana
Arabidopsis thaliana		 callus Callus of T87 cell cultured with MS medium containing 500 nM NAA
12 GSM539894 T87 callus replicate 3 37,478 National Institute of Advanced Industrial Science and Technology 2010-05-03 [MPSS] Agilent-015059 Arabidopsis 3 Oligo Microarray 4x44K G2519F (Probe Name version) (GPL7299) RNA Arabidopsis thaliana
Arabidopsis thaliana		 callus Callus of T87 cell cultured with MS medium containing 500 nM NAA
13 GSM539895 2,4-D-induced callus replicate 1 37,478 National Institute of Advanced Industrial Science and Technology 2010-05-03 [MPSS] Agilent-015059 Arabidopsis 3 Oligo Microarray 4x44K G2519F (Probe Name version) (GPL7299) RNA Arabidopsis thaliana
Arabidopsis thaliana		 callus 2,4-D induced callus cultured with MS medium containing 500 micro g/L 2,4-D
14 GSM539896 2,4-D-induced callus replicate 2 37,478 National Institute of Advanced Industrial Science and Technology 2010-05-03 [MPSS] Agilent-015059 Arabidopsis 3 Oligo Microarray 4x44K G2519F (Probe Name version) (GPL7299) RNA Arabidopsis thaliana
Arabidopsis thaliana		 callus 2,4-D induced callus cultured with MS medium containing 500 micro g/L 2,4-D
15 GSM539897 2,4-D-induced callus replicate 3 37,478 National Institute of Advanced Industrial Science and Technology 2010-05-03 [MPSS] Agilent-015059 Arabidopsis 3 Oligo Microarray 4x44K G2519F (Probe Name version) (GPL7299) RNA Arabidopsis thaliana
Arabidopsis thaliana		 callus 2,4-D induced callus cultured with MS medium containing 500 micro g/L 2,4-D
16 GSM460661 6213 32,149 Flanders Institute for Biotechnology (VIB) 2009-10-09 [MPSS] Agilent-015059 Arabidopsis 3 Oligo Microarray 4x44K G2519F (Probe Name version) (GPL7299) RNA Arabidopsis thaliana
Arabidopsis thaliana		 meristem/growing tissue shoot apex _in vitro/LD/stage 1.02_rep a
17 GSM460662 6214 32,149 Flanders Institute for Biotechnology (VIB) 2009-10-09 [MPSS] Agilent-015059 Arabidopsis 3 Oligo Microarray 4x44K G2519F (Probe Name version) (GPL7299) RNA Arabidopsis thaliana
Arabidopsis thaliana		 meristem/growing tissue shoot apex _in vitro/LD/stage 1.02_rep b
18 GSM460663 6215 32,149 Flanders Institute for Biotechnology (VIB) 2009-10-09 [MPSS] Agilent-015059 Arabidopsis 3 Oligo Microarray 4x44K G2519F (Probe Name version) (GPL7299) RNA Arabidopsis thaliana
Arabidopsis thaliana		 meristem/growing tissue shoot apex _in vitro/LD/stage 1.02_rep c
19 GSM460664 6216 32,149 Flanders Institute for Biotechnology (VIB) 2009-10-09 [MPSS] Agilent-015059 Arabidopsis 3 Oligo Microarray 4x44K G2519F (Probe Name version) (GPL7299) RNA Arabidopsis thaliana
Arabidopsis thaliana		 meristem/growing tissue shoot apex _in vitro/LD/stage 1.02_rep d
20 GSM226844 MPSS-AP1-17bp 58,833 University of Manchester 2007-09-04 [MPSS] Arabidopsis mRNA MPSS signatures (GPL5800) MPSS Arabidopsis thaliana
Arabidopsis thaliana		 meristem/growing tissue ap1-10 infloresence - mixed stage, immature buds, signature MPSS
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