Gene Expression Omnibus (GEO) Overview Version：2013-04-06Japanese page
An overview of the GEO entries broken down by the measurement platforms and the features of the measured samples.
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Data Unit : [ DataSet / Sample / Platform ] Show explanation>> <<Hide explanation
DataSet : Series(GSE) x Platform(GPL). A set of related gene expression data.
Sample : Biological materials.
platform : Methods or instruments used for the gene expression profilings.
The numbers shown in the tabs are the numbers of the data (series, samples or platforms) belonging to the groups.
  Human
(502,421)		   Primates
(4,928)		   Rodents
(181,106)		   Mammals
(16,260)		   Vertebrates
(18,263)		   Invertebrates
(37,338)		   Plants
(91,454)		   Bacteria
(39,082)		   Viruses
(1,266)		   Phages
(101)		   Unclassified
(5,242)		   All
(898,944)		  
  SAGE NlaIII
(1,683)		   SAGE RsaI
(3)		   SAGE Sau3A
(54)		   MPSS
(439)		   GeneChip
(377,145)		   Tiling Array
(21,846)		   cDNA Array
(103,476)		   Oligo Array
(239,584)		   Bead Array
(106,999)		   Protein Array
(5)		   Antibody
(1,152)		   RT-PCR
(3,959)		   HT-Seq
(35,574)		   Other
(6,909)		   All
(898,944)		  
  brain
(35)		   blood
(13)		   connective
(10)		   reproductive
(12)		   muscular
(7)		   digestive
(10)		   liver
(6)		   lung
(4)		   urinary
(5)		   endo/exo-crine
(13)		   embryo
(3)		   adult aerial structure
(49)		   young aerial structure
(85)		   root
(32)		   meristem/growing tissue
(26)		   flower/sexual organ
(9)		   seed/fruit/grain
(3)		   pooled
(20)		   unclassified
(97)		   all
(439)		  
Sample ID Title Number of Data Institute Submission date Platform Sample type Species Organ class Reasoning of the classification
Keywords used for the classification are shown with bold font.
1 GSM170902 NME library 28,818 University of Delaware 2007-02-22 [MPSS] Rice mRNA MPSS signatures (GPL3777) MPSS Oryza sativa
Oryza sativa		 pooled 60 days - Crown vegetative meristematic tissue
2 GSM109198 Small RNA MPSS signatures located in the region of the chromosome 3 centromere. 7,062 University of Delaware 2006-05-17 [MPSS] Rice small RNA MPSS signatures (GPL3776) MPSS Oryza sativa
Oryza sativa		 pooled Immature panicle and seedlings
3 GSM109200 Poly(A)+ MPSS signatures located at in the region of the chromosome 3 centromere 504 University of Delaware 2006-05-17 [MPSS] Rice mRNA MPSS signatures (GPL3777) MPSS Oryza sativa
Oryza sativa		 pooled MPSS data were obtained from the following samples: young leaves, young roots, young leaves - cold stressed, young roots - cold stressed, young leaves - drought stressed, young roots - drought stressed, young leaves - salt stressed, young roots - salt stressed, mature leaves, mature roots, 10 day old seedlings (dark grown), 3 day old seedlings, immature panicle, meristematic tissue, ovary & mature stigma, pollen, callus.
4 GSM83050 hybrid_5X3_6days 28,741 Solexa, Inc. 2005-11-10 [MPSS] oyster MPSS (GPL3062) MPSS Crassostrea gigas
Crassostrea gigas		 pooled whole organism: Library Oyst.F3M5_ful01 Oysters larvae Age: 6 days Sex: undifferentiated cDNA library: Library DpnII restriction - (classic MPSS, cloning DpnII to poly A fragment) Sequence length 17 bp MPSS: runs Oyst.F3M5_ful01.3358F.b 8/8/2002 593744 16306 QC Passed Oyst.F3M5_ful01.3358F.a 8/8/2002 651271 17662 QC Passed Oyst.F3M5_ful01.3358T.a 8/8/2002 531946 18009 QC Passed Oyst.F3M5_ful01.3358T.b 8/8/2002 491956 15885 QC Passed Run group: Total Beads successfully sequenced - 1826157 Total Distinct Signatures - 22954
5 GSM83048 parent_3X3_6days 27,446 Solexa, Inc. 2005-11-10 [MPSS] oyster MPSS (GPL3062) MPSS Crassostrea gigas
Crassostrea gigas		 pooled whole organism: Library Oyst.F3M3_ful01 Oysters larvae Age: 6 days Sex: undifferentiated cDNA library: Library DpnII restriction - (classic MPSS, cloning DpnII to poly A fragment) Sequence length 17 bp MPSS: runs Oyst.F3M3_ful01.3357F.a 8/9/2002 598046 19292 QC Passed Oyst.F3M3_ful01.3357T.b 8/9/2002 577307 22128 QC Passed Oyst.F3M3_ful01.3357F.c 8/9/2002 559781 19636 QC Passed Run group: Total Beads successfully sequenced - 1735134 Total Distinct Signatures - 27446
6 GSM83049 parent_5X5_6days 25,553 Solexa, Inc. 2005-11-10 [MPSS] oyster MPSS (GPL3062) MPSS Crassostrea gigas
Crassostrea gigas		 pooled whole organism: Library Oyst.F5M5_ful01 Oysters larvae Age: 6 days Sex: undifferentiated cDNA library: Library DpnII restriction - (classic MPSS, cloning DpnII to poly A fragment) Sequence length 17 bp MPSS: runs Oyst.F5M5_ful01.3359F.b 8/8/2002 705467 19897 QC Passed Oyst.F5M5_ful01.3359F.a 8/8/2002 681356 21191 QC Passed Oyst.F5M5_ful01.3359T.a 8/8/2002 555701 17618 QC Passed Oyst.F5M5_ful01.3359T.b 8/8/2002 499852 19303 QC Passed Run group: Total Beads successfully sequenced - 2442376 Total Distinct Signatures - 25553
7 GSM83051 hybrid_3X5_6days 22,954 Solexa, Inc. 2005-11-10 [MPSS] oyster MPSS (GPL3062) MPSS Crassostrea gigas
Crassostrea gigas		 pooled whole organism: Library Oyst.F5M3_ful01 Oysters larvae Age: 6 days Sex: undifferentiated cDNA library: Library DpnII restriction - (classic MPSS, cloning DpnII to poly A fragment) Sequence length 17 bp MPSS: runs Oyst.F5M3_ful01.3364T.b 8/9/2002 462881 21213 QC Passed Oyst.F5M3_ful01.3364F.b 8/9/2002 586917 24163 QC Passed Oyst.F5M3_ful01.3364F.a 8/9/2002 556938 21709 QC Passed Oyst.F5M3_ful01.3364T.a 8/9/2002 544843 23102 QC Passed Run group: Total Beads successfully sequenced - 2151579 Total Distinct Signatures - 28741
8 GSM44337 Brain:Olfactory Bulb, Male (MoBr.MaOB) 15,914 Solexa 2005-03-02 [MPSS] MPSS [DpnII: Mus musculus] signature list (GPL1010) MPSS Mus musculus
Mus musculus		 pooled Brain:Olfactory Bulb, Male total RNA
9 GSM44334 Brain:Cortical mantle, Female (MoBr.FeCM) 13,992 Solexa 2005-03-02 [MPSS] MPSS [DpnII: Mus musculus] signature list (GPL1010) MPSS Mus musculus
Mus musculus		 pooled Brain:Cortical mantle, Female total RNA
10 GSM44336 Brain:Cortical mantle, Male (MoBr.MaCM) 13,412 Solexa 2005-03-02 [MPSS] MPSS [DpnII: Mus musculus] signature list (GPL1010) MPSS Mus musculus
Mus musculus		 pooled Brain:Cortical mantle, Male total RNA
11 GSM36604 Brain:Olfactory Bulb, Female (MoBr.FeOB) 12,391 Solexa 2004-11-30 [MPSS] MPSS [DpnII: Mus musculus] signature list (GPL1010) MPSS Mus musculus
Mus musculus		 pooled Brain:Olfactory Bulb, Female total RNA
12 GSM36721 Brain:OlfactoryTubercle,PrefrontalCortex,Septum, Female (MoBr.FTCS) 11,443 Solexa 2004-12-01 [MPSS] MPSS [DpnII: Mus musculus] signature list (GPL1010) MPSS Mus musculus
Mus musculus		 pooled Brain:OlfactoryTubercle,PrefrontalCortex,Septum, Female total RNA
13 GSM40111 Brain:OlfactoryTubercle,PrefrontalCortex,Septum, Male (MoBr.MTCS) 10,207 Solexa 2005-01-28 [MPSS] MPSS [DpnII: Mus musculus] signature list (GPL1010) MPSS Mus musculus
Mus musculus		 pooled Brain:OlfactoryTubercle,PrefrontalCortex,Septum, Male total RNA
14 GSM44328 Heart:Aorta, Female (MoAo.Feml) 9,527 Solexa 2005-03-02 [MPSS] MPSS [DpnII: Mus musculus] signature list (GPL1010) MPSS Mus musculus
Mus musculus		 pooled Heart:Aorta, Female total RNA
15 GSM27143 Kidney:medulla, Male (MoKi.MaMd) 9,410 Solexa 2004-07-20 [MPSS] MPSS [DpnII: Mus musculus] signature list (GPL1010) MPSS Mus musculus
Mus musculus		 pooled Kidney:medulla, Male total RNA
16 GSM27141 Kidney:medulla, Female (MoKi.FeMd) 9,217 Solexa 2004-07-20 [MPSS] MPSS [DpnII: Mus musculus] signature list (GPL1010) MPSS Mus musculus
Mus musculus		 pooled Kidney:medulla, Female total RNA
17 GSM38489 Heart:Aorta, Male (MoAo.Male) 9,032 Solexa 2005-01-05 [MPSS] MPSS [DpnII: Mus musculus] signature list (GPL1010) MPSS Mus musculus
Mus musculus		 pooled Heart:Aorta, Male total RNA
18 GSM34298 Kidney:cortex, Female (MoKi.FeCr) 8,622 Solexa 2004-11-01 [MPSS] MPSS [DpnII: Mus musculus] signature list (GPL1010) MPSS Mus musculus
Mus musculus		 pooled Kidney:cortex, Female total RNA
19 GSM40112 Cervix and vagina, Female (MoCV.Feml) 7,149 Solexa 2005-01-28 [MPSS] MPSS [DpnII: Mus musculus] signature list (GPL1010) MPSS Mus musculus
Mus musculus		 pooled Cervix and vagina, Female total RNA
20 GSM30489 Human peripheral blood lymphocytes (HuPB.ctrl) - mRNA 23,921 Lynx Therapeutics, Inc. 2004-09-10 [MPSS] Massively Parallel Signature Sequencing - MPSS (classic method) (GPL1443) MPSS Homo sapiens
Homo sapiens		 pooled Human peripheral blood lymphocytes mRNA
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