Gene Expression Omnibus (GEO) Overview Version：2013-06-15Japanese page
An overview of the GEO entries broken down by the measurement platforms and the features of the measured samples.
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Data Unit : [ DataSet / Sample / Platform ] Show explanation>> <<Hide explanation
DataSet : Series(GSE) x Platform(GPL). A set of related gene expression data.
Sample : Biological materials.
platform : Methods or instruments used for the gene expression profilings.
The numbers shown in the tabs are the numbers of the data (series, samples or platforms) belonging to the groups.
  Human
(521,594)		   Primates
(5,069)		   Rodents
(189,292)		   Mammals
(16,929)		   Vertebrates
(18,759)		   Invertebrates
(38,793)		   Plants
(93,301)		   Bacteria
(39,613)		   Viruses
(1,263)		   Phages
(101)		   Unclassified
(5,497)		   All
(931,947)		  
  SAGE NlaIII
(1,683)		   SAGE RsaI
(3)		   SAGE Sau3A
(54)		   MPSS
(439)		   GeneChip
(391,468)		   Tiling Array
(22,222)		   cDNA Array
(104,397)		   Oligo Array
(247,270)		   Bead Array
(112,023)		   Protein Array
(5)		   Antibody
(1,160)		   RT-PCR
(4,486)		   HT-Seq
(39,106)		   Other
(7,515)		   All
(931,947)		  
  brain
(35)		   blood
(13)		   connective
(10)		   reproductive
(12)		   muscular
(7)		   digestive
(10)		   liver
(6)		   lung
(4)		   urinary
(5)		   endo/exo-crine
(13)		   embryo
(3)		   adult aerial structure
(49)		   young aerial structure
(85)		   root
(32)		   meristem/growing tissue
(26)		   flower/sexual organ
(9)		   seed/fruit/grain
(3)		   pooled
(20)		   unclassified
(97)		   all
(439)		  
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Sample ID Title Number of Data Institute Submission date Platform Sample type Species Organ class Reasoning of the classification
Keywords used for the classification are shown with bold font.
1 GSM265799 UNT library 52,928 University of Delaware 2008-02-13 [MPSS] Rice small RNA MPSS signatures (GPL3776) MPSS Oryza sativa
Oryza sativa		 young aerial structure Seedling control for ABA treatment
2 GSM361970 Col-0 red light over Col-0 dark replicate 1 45,220 KAIST 2009-01-21 [MPSS] Agilent-015059 Arabidopsis 3 Oligo Microarray 4x44K G2519F (Feature Number version) (GPL6177) RNA Arabidopsis thaliana
Arabidopsis thaliana		 young aerial structure Rc-grown Col-0 seedlings DD-grown Col-0 seedlings
3 GSM361971 Col-0 red light over Col-0 dark replicate 2 45,220 KAIST 2009-01-21 [MPSS] Agilent-015059 Arabidopsis 3 Oligo Microarray 4x44K G2519F (Feature Number version) (GPL6177) RNA Arabidopsis thaliana
Arabidopsis thaliana		 young aerial structure Rc-grown Col-0 seedlings DD-grown Col-0 seedlings
4 GSM361972 Col-0 red light over Col-0 dark replicate 3 45,220 KAIST 2009-01-21 [MPSS] Agilent-015059 Arabidopsis 3 Oligo Microarray 4x44K G2519F (Feature Number version) (GPL6177) RNA Arabidopsis thaliana
Arabidopsis thaliana		 young aerial structure Rc-grown Col-0 seedlings DD-grown Col-0 seedlings
5 GSM361973 pifQ dark over Col-0 dark replicate 1 45,220 KAIST 2009-01-21 [MPSS] Agilent-015059 Arabidopsis 3 Oligo Microarray 4x44K G2519F (Feature Number version) (GPL6177) RNA Arabidopsis thaliana
Arabidopsis thaliana		 young aerial structure DD-grown pifQ seedlings DD-grown Col-0 seedlings
6 GSM361974 pifQ dark over Col-0 dark replicate 2 45,220 KAIST 2009-01-21 [MPSS] Agilent-015059 Arabidopsis 3 Oligo Microarray 4x44K G2519F (Feature Number version) (GPL6177) RNA Arabidopsis thaliana
Arabidopsis thaliana		 young aerial structure DD-grown pifQ seedlings DD-grown Col-0 seedlings
7 GSM361975 pifQ dark over Col-0 dark replicate 3 45,220 KAIST 2009-01-21 [MPSS] Agilent-015059 Arabidopsis 3 Oligo Microarray 4x44K G2519F (Feature Number version) (GPL6177) RNA Arabidopsis thaliana
Arabidopsis thaliana		 young aerial structure DD-grown pifQ seedlings DD-grown Col-0 seedlings
8 GSM237898 Arabidopsis seedlings (WT) with/without elicitor treatment 39,941 Meiji University 2007-10-17 [MPSS] Agilent-012600 Arabidopsis 3 Oligo Microarray (4142A (Feature Number version) (GPL2871) RNA Arabidopsis thaliana
Arabidopsis thaliana		 young aerial structure Arabidopsis seedlings (WT) without elicitor treatment Chitin oligosaccharide treated Arabidopsis seedlings (WT)
9 GSM237899 Arabidopsis seedlings (WT) with/without elicitor treatment (color swap) 39,941 Meiji University 2007-10-17 [MPSS] Agilent-012600 Arabidopsis 3 Oligo Microarray (4142A (Feature Number version) (GPL2871) RNA Arabidopsis thaliana
Arabidopsis thaliana		 young aerial structure Chitin oligosaccharide treated Arabidopsis seedlings (WT) Arabidopsis seedlings (WT) without elicitor treatment
10 GSM237900 Arabidopsis mutant seedlings (cerk1) with/without elicitor treatment 39,941 Meiji University 2007-10-17 [MPSS] Agilent-012600 Arabidopsis 3 Oligo Microarray (4142A (Feature Number version) (GPL2871) RNA Arabidopsis thaliana
Arabidopsis thaliana		 young aerial structure Arabidopsis mutant seedlings (cerk1) without elicitor treatment Chitin oligosaccharide treated Arabidopsis mutant seedlings (cerk1)
11 GSM237901 Arabidopsis mutant seedlings (cerk1) with/without elicitor treatment (color swap) 39,941 Meiji University 2007-10-17 [MPSS] Agilent-012600 Arabidopsis 3 Oligo Microarray (4142A (Feature Number version) (GPL2871) RNA Arabidopsis thaliana
Arabidopsis thaliana		 young aerial structure Chitin oligosaccharide treated Arabidopsis mutant seedlings (cerk1) Arabidopsis mutant seedlings (cerk1) without elicitor treatment
12 GSM366996 hsfb1 hsfb2b double knockout vs wild type #1 39,102 National Institute of Advanced Industrial Science and Technology 2009-02-04 [MPSS] Agilent-015059 Arabidopsis 3 Oligo Microarray 4x44K G2519F (Feature Number version) (GPL6177) RNA Arabidopsis thaliana
Arabidopsis thaliana		 young aerial structure wild-type seedling hsfb1 hsfb2b seedling
13 GSM366997 hsfb1 hsfb2b double knockout vs wild type #2 39,102 National Institute of Advanced Industrial Science and Technology 2009-02-04 [MPSS] Agilent-015059 Arabidopsis 3 Oligo Microarray 4x44K G2519F (Feature Number version) (GPL6177) RNA Arabidopsis thaliana
Arabidopsis thaliana		 young aerial structure hsfb1 hsfb2b seedling wild-type seedling
14 GSM366998 hsfb1 hsfb2b double knockout vs wild type #3 39,102 National Institute of Advanced Industrial Science and Technology 2009-02-04 [MPSS] Agilent-015059 Arabidopsis 3 Oligo Microarray 4x44K G2519F (Feature Number version) (GPL6177) RNA Arabidopsis thaliana
Arabidopsis thaliana		 young aerial structure wild-type seedling hsfb1 hsfb2b seedling
15 GSM366999 hsfb1 hsfb2b double knockout vs wild type #4 39,102 National Institute of Advanced Industrial Science and Technology 2009-02-04 [MPSS] Agilent-015059 Arabidopsis 3 Oligo Microarray 4x44K G2519F (Feature Number version) (GPL6177) RNA Arabidopsis thaliana
Arabidopsis thaliana		 young aerial structure hsfb1 hsfb2b seedling wild-type seedling
16 GSM460129 Tetraploid (line 1326-28) vs diploid Col-0 seedlings Replicate 1 39,102 Technische Universität München, WZW 2009-10-08 [MPSS] Agilent-015059 Arabidopsis 3 Oligo Microarray 4x44K G2519F (Feature Number version) (GPL6177) RNA Arabidopsis thaliana
Arabidopsis thaliana		 young aerial structure Tetraploid (line 1326-28) vs diploid Col-0 seedlings Replicate 1
17 GSM460130 Tetraploid (line 1326-26) vs diploid Col-0 seedlings Replicate 2 39,102 Technische Universität München, WZW 2009-10-08 [MPSS] Agilent-015059 Arabidopsis 3 Oligo Microarray 4x44K G2519F (Feature Number version) (GPL6177) RNA Arabidopsis thaliana
Arabidopsis thaliana		 young aerial structure Tetraploid (line 1326-26) vs diploid Col-0 seedlings Replicate 2
18 GSM460131 Tetraploid (line 1326-19) vs diploid Col-0 seedlings Replicate 3 39,102 Technische Universität München, WZW 2009-10-08 [MPSS] Agilent-015059 Arabidopsis 3 Oligo Microarray 4x44K G2519F (Feature Number version) (GPL6177) RNA Arabidopsis thaliana
Arabidopsis thaliana		 young aerial structure Tetraploid (line 1326-19) vs diploid Col-0 seedlings Replicate 3
19 GSM460132 Tetraploid (line 1326-12) vs diploid Col-0 seedlings Replicate 4 39,102 Technische Universität München, WZW 2009-10-08 [MPSS] Agilent-015059 Arabidopsis 3 Oligo Microarray 4x44K G2519F (Feature Number version) (GPL6177) RNA Arabidopsis thaliana
Arabidopsis thaliana		 young aerial structure Tetraploid (line 1326-12) vs diploid Col-0 seedlings Replicate 4
20 GSM460133 Diploid vs tetraploid Col-0 (line 1326-28) seedlings Replicate 5 39,102 Technische Universität München, WZW 2009-10-08 [MPSS] Agilent-015059 Arabidopsis 3 Oligo Microarray 4x44K G2519F (Feature Number version) (GPL6177) RNA Arabidopsis thaliana
Arabidopsis thaliana		 young aerial structure Diploid vs tetraploid Col-0 (line 1326-28) seedlings Replicate 5
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