Gene Expression Omnibus (GEO) Overview Version：2013-06-15Japanese page
An overview of the GEO entries broken down by the measurement platforms and the features of the measured samples.
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Data Unit : [ DataSet / Sample / Platform ] Show explanation>> <<Hide explanation
DataSet : Series(GSE) x Platform(GPL). A set of related gene expression data.
Sample : Biological materials.
platform : Methods or instruments used for the gene expression profilings.
The numbers shown in the tabs are the numbers of the data (series, samples or platforms) belonging to the groups.
  Human
(521,594)		   Primates
(5,069)		   Rodents
(189,292)		   Mammals
(16,929)		   Vertebrates
(18,759)		   Invertebrates
(38,793)		   Plants
(93,301)		   Bacteria
(39,613)		   Viruses
(1,263)		   Phages
(101)		   Unclassified
(5,497)		   All
(931,947)		  
  SAGE NlaIII
(1,683)		   SAGE RsaI
(3)		   SAGE Sau3A
(54)		   MPSS
(439)		   GeneChip
(391,468)		   Tiling Array
(22,222)		   cDNA Array
(104,397)		   Oligo Array
(247,270)		   Bead Array
(112,023)		   Protein Array
(5)		   Antibody
(1,160)		   RT-PCR
(4,486)		   HT-Seq
(39,106)		   Other
(7,515)		   All
(931,947)		  
  brain
(35)		   blood
(13)		   connective
(10)		   reproductive
(12)		   muscular
(7)		   digestive
(10)		   liver
(6)		   lung
(4)		   urinary
(5)		   endo/exo-crine
(13)		   embryo
(3)		   adult aerial structure
(49)		   young aerial structure
(85)		   root
(32)		   meristem/growing tissue
(26)		   flower/sexual organ
(9)		   seed/fruit/grain
(3)		   pooled
(20)		   unclassified
(97)		   all
(439)		  
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Sample ID Title Number of Data Institute Submission date Platform Sample type Species Organ class Reasoning of the classification
Keywords used for the classification are shown with bold font.
1 GSM177173 tdt-1_3days_rep1 37,685 University of Utah 2007-03-23 [MPSS] Agilent-012600 Arabidopsis 3 Oligo Microarray (4142A (Feature Number version) (GPL2871) RNA Arabidopsis thaliana
Arabidopsis thaliana		 young aerial structure wild type, whole seedlings, 3 days tdt-1, whole seedlings, 3 days
2 GSM177174 tdt-1_3days_rep2 37,685 University of Utah 2007-03-23 [MPSS] Agilent-012600 Arabidopsis 3 Oligo Microarray (4142A (Feature Number version) (GPL2871) RNA Arabidopsis thaliana
Arabidopsis thaliana		 young aerial structure wild type, whole seedlings, 3 days tdt-1, whole seedlings, 3 days
3 GSM177205 tdt-1_3days_rep3 37,685 University of Utah 2007-03-23 [MPSS] Agilent-012600 Arabidopsis 3 Oligo Microarray (4142A (Feature Number version) (GPL2871) RNA Arabidopsis thaliana
Arabidopsis thaliana		 young aerial structure tdt-1, whole seedlings, 3 days wild type, whole seedlings, 3 days
4 GSM265799 UNT library 52,928 University of Delaware 2008-02-13 [MPSS] Rice small RNA MPSS signatures (GPL3776) MPSS Oryza sativa
Oryza sativa		 young aerial structure Seedling control for ABA treatment
5 GSM65749 Seedlings, small RNA MPSS set 2 33,640 University of Delaware 2005-07-26 [MPSS] Small RNA identification in Arabidopsis thaliana using modified MPSS (GPL2675) MPSS Arabidopsis thaliana
Arabidopsis thaliana		 young aerial structure Seedlings
6 GSM265798 ABA library 33,389 University of Delaware 2008-02-13 [MPSS] Rice small RNA MPSS signatures (GPL3776) MPSS Oryza sativa
Oryza sativa		 young aerial structure Seedlings treated with ABA
7 GSM170919 SNU library 33,115 University of Delaware 2007-02-22 [MPSS] Rice small RNA MPSS signatures (GPL3776) MPSS Oryza sativa
Oryza sativa		 young aerial structure Germinating seedlings
8 GSM265797 SNM library 30,864 University of Delaware 2008-02-13 [MPSS] Rice small RNA MPSS signatures (GPL3776) MPSS Oryza sativa
Oryza sativa		 young aerial structure Germinating seedlings infected with Magnaporthe grisea (strain 70-15)]
9 GSM65748 Seedlings, small RNA MPSS set 1 27,833 University of Delaware 2005-07-26 [MPSS] Small RNA identification in Arabidopsis thaliana using modified MPSS (GPL2675) MPSS Arabidopsis thaliana
Arabidopsis thaliana		 young aerial structure Seedlings
10 GSM169569 NGD library 18,610 University of Delaware 2007-02-20 [MPSS] Rice mRNA MPSS signatures (GPL3777) MPSS Oryza sativa
Oryza sativa		 young aerial structure 10 days - germinting rice seedlings grown in dark
11 GSM460129 Tetraploid (line 1326-28) vs diploid Col-0 seedlings Replicate 1 39,102 Technische Universität München, WZW 2009-10-08 [MPSS] Agilent-015059 Arabidopsis 3 Oligo Microarray 4x44K G2519F (Feature Number version) (GPL6177) RNA Arabidopsis thaliana
Arabidopsis thaliana		 young aerial structure Tetraploid (line 1326-28) vs diploid Col-0 seedlings Replicate 1
12 GSM460130 Tetraploid (line 1326-26) vs diploid Col-0 seedlings Replicate 2 39,102 Technische Universität München, WZW 2009-10-08 [MPSS] Agilent-015059 Arabidopsis 3 Oligo Microarray 4x44K G2519F (Feature Number version) (GPL6177) RNA Arabidopsis thaliana
Arabidopsis thaliana		 young aerial structure Tetraploid (line 1326-26) vs diploid Col-0 seedlings Replicate 2
13 GSM460131 Tetraploid (line 1326-19) vs diploid Col-0 seedlings Replicate 3 39,102 Technische Universität München, WZW 2009-10-08 [MPSS] Agilent-015059 Arabidopsis 3 Oligo Microarray 4x44K G2519F (Feature Number version) (GPL6177) RNA Arabidopsis thaliana
Arabidopsis thaliana		 young aerial structure Tetraploid (line 1326-19) vs diploid Col-0 seedlings Replicate 3
14 GSM460132 Tetraploid (line 1326-12) vs diploid Col-0 seedlings Replicate 4 39,102 Technische Universität München, WZW 2009-10-08 [MPSS] Agilent-015059 Arabidopsis 3 Oligo Microarray 4x44K G2519F (Feature Number version) (GPL6177) RNA Arabidopsis thaliana
Arabidopsis thaliana		 young aerial structure Tetraploid (line 1326-12) vs diploid Col-0 seedlings Replicate 4
15 GSM460133 Diploid vs tetraploid Col-0 (line 1326-28) seedlings Replicate 5 39,102 Technische Universität München, WZW 2009-10-08 [MPSS] Agilent-015059 Arabidopsis 3 Oligo Microarray 4x44K G2519F (Feature Number version) (GPL6177) RNA Arabidopsis thaliana
Arabidopsis thaliana		 young aerial structure Diploid vs tetraploid Col-0 (line 1326-28) seedlings Replicate 5
16 GSM460134 Diploid vs tetraploid Col-0 (line 1326-26) seedlings Replicate 6 39,102 Technische Universität München, WZW 2009-10-08 [MPSS] Agilent-015059 Arabidopsis 3 Oligo Microarray 4x44K G2519F (Feature Number version) (GPL6177) RNA Arabidopsis thaliana
Arabidopsis thaliana		 young aerial structure Diploid vs tetraploid Col-0 (line 1326-26) seedlings Replicate 6
17 GSM460135 Diploid vs tetraploid Col-0 (line 1326-19) seedlings Replicate 7 39,102 Technische Universität München, WZW 2009-10-08 [MPSS] Agilent-015059 Arabidopsis 3 Oligo Microarray 4x44K G2519F (Feature Number version) (GPL6177) RNA Arabidopsis thaliana
Arabidopsis thaliana		 young aerial structure Diploid vs tetraploid Col-0 (line 1326-19) seedlings Replicate 7
18 GSM460136 Diploid vs tetraploid Col-0 (line 1326-12) seedlings Replicate 8 39,102 Technische Universität München, WZW 2009-10-08 [MPSS] Agilent-015059 Arabidopsis 3 Oligo Microarray 4x44K G2519F (Feature Number version) (GPL6177) RNA Arabidopsis thaliana
Arabidopsis thaliana		 young aerial structure Diploid vs tetraploid Col-0 (line 1326-12) seedlings Replicate 8
19 GSM460137 Diploid vs tetraploid Ler-0 (line 1026-41) seedlings Replicate 1 39,102 Technische Universität München, WZW 2009-10-08 [MPSS] Agilent-015059 Arabidopsis 3 Oligo Microarray 4x44K G2519F (Feature Number version) (GPL6177) RNA Arabidopsis thaliana
Arabidopsis thaliana		 young aerial structure Diploid vs tetraploid Ler-0 (line 1026-41) seedlings Replicate 1
20 GSM460138 Diploid vs tetraploid Ler-0 (line 1026-40) seedlings Replicate 2 39,102 Technische Universität München, WZW 2009-10-08 [MPSS] Agilent-015059 Arabidopsis 3 Oligo Microarray 4x44K G2519F (Feature Number version) (GPL6177) RNA Arabidopsis thaliana
Arabidopsis thaliana		 young aerial structure Diploid vs tetraploid Ler-0 (line 1026-40) seedlings Replicate 2
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