Gene Expression Omnibus (GEO) Overview Version：2013-04-06Japanese page
An overview of the GEO entries broken down by the measurement platforms and the features of the measured samples.
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Data Unit : [ DataSet / Sample / Platform ] Show explanation>> <<Hide explanation
DataSet : Series(GSE) x Platform(GPL). A set of related gene expression data.
Sample : Biological materials.
platform : Methods or instruments used for the gene expression profilings.
The numbers shown in the tabs are the numbers of the data (series, samples or platforms) belonging to the groups.
  Human
(129)		   Primates
(0)		   Rodents
(67)		   Mammals
(14)		   Vertebrates
(10)		   Invertebrates
(13)		   Plants
(45)		   Bacteria
(81)		   Viruses
(1)		   Phages
(0)		   Unclassified
(28)		   All
(390)		  
  SAGE NlaIII
(0)		   SAGE RsaI
(0)		   SAGE Sau3A
(0)		   MPSS
(0)		   GeneChip
(34)		   Tiling Array
(8)		   cDNA Array
(122)		   Oligo Array
(208)		   Bead Array
(3)		   Protein Array
(0)		   Antibody
(0)		   RT-PCR
(5)		   HT-Seq
(4)		   Other
(6)		   All
(390)		  
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Platform ID Title Number of the probes Institute Submission date Manufacturer Species Platform class Reasoning of the classification
Keywords used for the classification are shown with bold font.
1 GPL5157 Technical Microbiology-Viable beer spoilage bacteria microarray V1 7 IPA 2007-05-11 Institut für Biotechnologie 1 Pectinatus frisingensis,Lactobacillus brevis,Lactobacillus casei,Lactobacillus coryniformis,Megasphaera cerevisiae,Pediococcus damnosus,Pectinatus cerevisiiphilus,Lactobacillus perolens,Pediococcus inopinatus
Pectinatus frisingensis,Lactobacillus brevis,Lactobacillus casei,Lactobacillus coryniformis,Megasphaera cerevisiae,Pediococcus damnosus,Pectinatus cerevisiiphilus,Lactobacillus perolens,Pediococcus inopinatus		 Oligo Array spotted oligonucleotide, Technical Microbiology-Viable beer spoilage bacteria microarray V1, Each oligonucleotide species-specific probe was spotted in 70 replicate spots on the microarray. Nine single beer spoilage bacteria species were detected with the developed prototype oligonucleotide microarray and also three mixes of two different beer spoilage bacteria species.
2 GPL5158 Technical Microbiology-Viable beer spoilage bacteria microarray V2 7 IPA 2007-05-11 Institut für Biotechnologie 1 Pectinatus frisingensis,Lactobacillus brevis,Lactobacillus casei,Lactobacillus coryniformis,Megasphaera cerevisiae,Pediococcus damnosus,Pectinatus cerevisiiphilus,Lactobacillus perolens,Pediococcus inopinatus
Pectinatus frisingensis,Lactobacillus brevis,Lactobacillus casei,Lactobacillus coryniformis,Megasphaera cerevisiae,Pediococcus damnosus,Pectinatus cerevisiiphilus,Lactobacillus perolens,Pediococcus inopinatus		 Oligo Array spotted oligonucleotide, Technical Microbiology-Viable beer spoilage bacteria microarray V2, Each oligonucleotide species-specific probe was spotted in 70 replicate spots on the microarray. Nine single beer spoilage bacteria species were detected with the developed prototype oligonucleotide microarray and also three mixes of two different beer spoilage bacteria species.
3 GPL13658 RetroArray - a DNA chip for rapid detection and identification of retroviruses 85 Helmholtz Zentrum München 2011-05-26 III. Medizinische Klinik, UMM - Universitätsmedizin Mannheim, University of Heidelberg, Germany Macaca mulatta,Homo sapiens
Macaca mulatta,Homo sapiens		 Oligo Array spotted oligonucleotide, RetroArray - a DNA chip for rapid detection and identification of retroviruses,
4 GPL10550 Ion Channel specific Human Oligo Array 99 ZMNH 2010-06-16 self-made Homo sapiens
Homo sapiens		 Oligo Array spotted oligonucleotide, Ion Channel specific Human Oligo Array,
5 GPL10270 Operon Oligonucleotide Set Innate Immunity and Aspergillosis 117 University of Wuerzburg 2010-03-30 University of Wuerzburg microarray facility Homo sapiens
Homo sapiens		 Oligo Array spotted oligonucleotide, Operon Oligonucleotide Set Innate Immunity and Aspergillosis, The Platform data table reflects a condensed representation of the array's quadruplicate features. The full array layout representing all of the individual features is linked as a supplementary file at the foot of this record.
6 GPL15090 Operon Oligonucleotide Set Innate Immunity and Aspergillosis 7MM 117 University of Wuerzburg 2012-01-05 University of Wuerzburg microarray facility Homo sapiens
Homo sapiens		 Oligo Array spotted oligonucleotide, Operon Oligonucleotide Set Innate Immunity and Aspergillosis 7MM, Nexterion® Slide E
7 GPL5462 Rattus norvegicus 0.2K Percutaneous Collagen Induction (PCI) 200 Institut fuer Technische Chemie 2007-07-03 TCI University of Hanover Rattus norvegicus
Rattus norvegicus		 Oligo Array spotted oligonucleotide, Rattus norvegicus 0.2K Percutaneous Collagen Induction (PCI),
8 GPL4750 DKFZ human_naive_T_cells 7_samples v1.0 276 Deutsches Krebsforschungszentrum (DKFZ) 2007-01-15 SuperArray Bioscience Corporation Homo sapiens
Homo sapiens		 Oligo Array spotted oligonucleotide, DKFZ human_naive_T_cells 7_samples v1.0, Oligo GEArray 300 Series microarrays can contain up to 276 oligonucleotide spots (including control spots and blanks) which are printed on a 3,8 x 4,8 cm nylon membrane (12 colmns, 23 rows). All oligonucleotide probes are derived from a sequence located at a median distance of approximately 160 nucleotides from the 3’ end of the coding region. Furthermore, gene specificity, sequence complexity, secondary structure, melting temperature and GC content are rigorously evaluated using a SuperArray Bioscience Corporation-proprietary computer algorithm. The customized Oligo GEArray COH-0005 described in this platform contains 247 different human gene probes, spotted on 253 positions (i.e. some genes are present in replicates) and 23 "non-human" control positions (e.g. sequences derived from E. coli, artificial sequences, or blanks).
9 GPL9350 EMBL/CodeLink Rat 0.28K miCHIP v9.2 279 University of Heidelberg 2009-10-05 Array were spotted by the Genomics Core Facility, EMBL, Germany. LNA-modified capture probes were manufactured by Exiqon, Denmark Rattus norvegicus
Rattus norvegicus		 Oligo Array spotted oligonucleotide, EMBL/CodeLink Rat 0.28K miCHIP v9.2, miChip array are spotted on CodeLink, GE Life Science, cat. no. 30001100). Codelink glass slides are coated with N-hydroxysuccinimide. NOTE: Probe sequences used in this array are proprietary, belonging to Exiqon.
10 GPL16277 UKD Gastroenterologie Mus musculus oligo array 288 Universitätsklinikum Düsseldorf 2012-11-14 [UKD Gastroenterologie]-[Gehrmann] Mus musculus
Mus musculus		 Oligo Array spotted oligonucleotide, UKD Gastroenterologie Mus musculus oligo array,
11 GPL10836 Febit GmbH Geniom Biochip MPEA Rattus norvegicus (Sanger miRBase version 14.0 September 2009) 323 Charité Universitätsmedizin Berlin 2010-08-18 Febit GmbH, Heidelberg, Germany Rattus norvegicus
Rattus norvegicus		 Oligo Array in situ oligonucleotide, Febit GmbH Geniom Biochip MPEA Rattus norvegicus (Sanger miRBase version 14.0 September 2009),
12 GPL8113 RASTA Rattus norvegicus 0.3 k ver. 1 324 Charite 2009-01-27 LFGC, Charité, Berlin, Germany Rattus norvegicus
Rattus norvegicus		 Oligo Array spotted oligonucleotide, RASTA Rattus norvegicus 0.3 k ver. 1,
13 GPL11037 RASTA Rattus norvegicus 0.3 k ver. 2 329 Charite 2010-10-11 LFGC, Charité Universitaetsmedizin Berlin, Germany Rattus norvegicus
Rattus norvegicus		 Oligo Array spotted oligonucleotide, RASTA Rattus norvegicus 0.3 k ver. 2,
14 GPL14719 GeneScan_SigB_350 350 University of Greifswald 2011-10-11 GeneScan Bacillus subtilis
Bacillus subtilis		 Oligo Array spotted oligonucleotide, GeneScan_SigB_350,
15 GPL6127 Homo sapiens 0.4K miChip v8 396 University of Heidelberg 2007-11-14 Array were spotted by the Genomics Core Facility, EMBL, Germany. LNA-modified capture probes were manufactured by Exiqon, Denmark Homo sapiens
Homo sapiens		 Oligo Array spotted oligonucleotide, Homo sapiens 0.4K miChip v8, miChip v8.0 annotation was done for human. miChip v8.0 contains capture probe matching several mouse and rat microRNAs that were not validated in human (miRbase v 8.0) miChip array are spotted on CodeLink, GE Life Science, cat. no. 30001100). Codelink glass slides are coated with N-hydroxysuccinimide
16 GPL10887 HCI Human TReg Chip 397 HCI - Helmholtz Centre for Infection Research 2010-09-07 German Research Centre for Biotechnology (GBF), Array Facility Homo sapiens
Homo sapiens		 Oligo Array spotted oligonucleotide, HCI Human TReg Chip,
17 GPL9352 EMBL/CodeLink Mouse 0.4K miCHIP V8.0 408 University of Heidelberg 2009-10-05 Array were spotted by the Genomics Core Facility, EMBL, Germany. LNA-modified capture probes were manufactured by Exiqon, Denmark Mus musculus
Mus musculus		 Oligo Array spotted oligonucleotide, EMBL/CodeLink Mouse 0.4K miCHIP V8.0, miChip v8.0 annotation was done for mouse; however miCHIP v8.0 (mouse) contains capture probe matching several human microRNAs that were not validated in mouse (miRBase v8.0). miChip array are spotted on CodeLink, GE Life Science, cat. no. 30001100). Codelink glass slides are coated with N-hydroxysuccinimide NOTE: Probe sequences used in this array are proprietary, belonging to Exiqon.
18 GPL11066 EMBL/CodeLink Mouse 0.4K miCHIP v11 415 University of Heidelberg 2010-10-16 Array was spotted by the Genomics Core Facility, EMBL, Germany. LNA-modified capture probes were manufactured by Exiqon, Denmark. Mus musculus
Mus musculus		 Oligo Array spotted oligonucleotide, EMBL/CodeLink Mouse 0.4K miCHIP v11, miChip v11.0 annotation was done for mouse (miRBase v11.0). miChip array are spotted on CodeLink slides (GE Life Science, cat. no. 30001100). CodeLink glass slides are coated with N-hydroxysuccinimide. NOTE: Probe sequences used in this array are proprietary, belonging to Exiqon.
19 GPL9347 EMBL/CodeLink Mouse 0.4K miCHIP v9.2 415 University of Heidelberg 2009-10-05 Array were spotted by the Genomics Core Facility, EMBL, Germany. LNA-modified capture probes were manufactured by Exiqon, Denmark Mus musculus
Mus musculus		 Oligo Array spotted oligonucleotide, EMBL/CodeLink Mouse 0.4K miCHIP v9.2, miChip array are spotted on CodeLink, GE Life Science, cat. no. 30001100). Codelink glass slides are coated with N-hydroxysuccinimide NOTE: Probe sequences used in this array are proprietary, belonging to Exiqon.
20 GPL7206 University of Goettingen Ambion miRNA array version 1 480 Universitaetsmedizin Goettingen 2008-08-26 DNA Microarray Facility, University of Goettingen Homo sapiens
Homo sapiens		 Oligo Array spotted oligonucleotide, University of Goettingen Ambion miRNA array version 1,
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