Gene Expression Omnibus (GEO) Overview Version´╝Ü2014-04-12Japanese page
An overview of the GEO entries broken down by the measurement platforms and the features of the measured samples.
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Data Unit : [ DataSet / Sample / Platform ] Show explanation>> <<Hide explanation
DataSet : Series(GSE) x Platform(GPL). A set of related gene expression data.
Sample : Biological materials.
platform : Methods or instruments used for the gene expression profilings.
The numbers shown in the tabs are the numbers of the data (series, samples or platforms) belonging to the groups.
  Human
(3,985)
  Primates
(80)
  Rodents
(1,907)
  Mammals
(359)
  Vertebrates
(450)
  Invertebrates
(1,139)
  Plants
(2,490)
  Bacteria
(1,901)
  Viruses
(90)
  Phages
(11)
  Unclassified
(542)
  All
(13,032)
 
  SAGE NlaIII
(83)
  SAGE RsaI
(1)
  SAGE Sau3A
(5)
  MPSS
(18)
  GeneChip
(809)
  Tiling Array
(1,310)
  cDNA Array
(2,770)
  Oligo Array
(5,679)
  Bead Array
(210)
  Protein Array
(1)
  Antibody
(28)
  RT-PCR
(209)
  HT-Seq
(1,710)
  Other
(187)
  All
(13,032)
 
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Platform ID Title Number of the probes Institute Submission date Manufacturer Species Platform class Reasoning of the classification
Keywords used for the classification are shown with bold font.
1 GPL6363 NimbleGen Mouse 3.1M NCBI36 3,076,954 Children's Hospital, Boston 2008-01-10 NimbleGen Roche Mus musculus
Mus musculus
Oligo Array in situ oligonucleotide, NimbleGen Mouse 3.1M NCBI36,
2 GPL9944 NimbleGen Human 2.1M array [HG18_CGH_LISOv1_HX1] 2,179,164 University of Georgia 2010-01-19 NimbleGen Homo sapiens
Homo sapiens
Oligo Array in situ oligonucleotide, NimbleGen Human 2.1M array [HG18_CGH_LISOv1_HX1], Annotation in this record based on NCBI human build 36.
3 GPL9684 Eichler-NimbleGen Human 2.1 HD2 CGH chip 2,175,072 University of Washington 2009-11-16 NimbleGen Homo sapiens
Homo sapiens
Oligo Array in situ oligonucleotide, Eichler-NimbleGen Human 2.1 HD2 CGH chip,
4 GPL10483 Human Meth 2.1M WG-T 8-10 [0701_HG18_TILE_08_HX1] 2,173,668 Mount Sinai School of Medicine 2010-06-04 NimbleGen Homo sapiens
Homo sapiens
Oligo Array spotted oligonucleotide, Human Meth 2.1M WG-T 8-10 [0701_HG18_TILE_08_HX1],
5 GPL11008 NimbleGen-Homo_sapiens-2.1M-hg18 2,173,668 Sage Bionetworks 2010-10-01 NimbleGen Homo sapiens
Homo sapiens
Oligo Array in situ oligonucleotide, NimbleGen-Homo_sapiens-2.1M-hg18, design ID: 5173 design description: 0701_HG18_TILE_27 native array description file: 0701_HG18_TILE_09_HX1.ndf native array description file: 0701_HG18_TILE_09_HX1.pos
6 GPL10671 080814_HG18_Deluxe_Promoter_HX1 2,173,622 SRA International, Inc 2010-07-12 NimbleGen Homo sapiens
Homo sapiens
Oligo Array in situ oligonucleotide, 080814_HG18_Deluxe_Promoter_HX1, Platform annotations are based on build HG18, NCBI 36 native array description file: 080814_HG18_Deluxe_Promoter_HX1.ndf native array description file: 080814_HG18_Deluxe_Promoter_HX1.pos
7 GPL10573 Human Meth 2.1M WG-T 10-10 [0701_HG18_TILE_10_HX1] 2,173,583 Mount Sinai School of Medicine 2010-06-22 NimbleGen Homo sapiens
Homo sapiens
Oligo Array spotted oligonucleotide, Human Meth 2.1M WG-T 10-10 [0701_HG18_TILE_10_HX1],
8 GPL17802 Nimblegen Mouse 2M Tiled Array_2o4 [100205_MM9_Economy_MeDIP_02_HX] 2,171,066 University of Edinburgh 2013-10-21 NimbleGen Mus musculus
Mus musculus
Oligo Array spotted oligonucleotide, Nimblegen Mouse 2M Tiled Array_2o4 [100205_MM9_Economy_MeDIP_02_HX], Design Name: 100205_MM9_Economy_MeDIP_02_HX
9 GPL17150 NimbleGen Sus scrofa 2.1M CGH array [120529_Sscr_10_2_WG_JH_CGH_HX1] 2,167,769 China Agriculture University 2013-05-11 NimbleGen Sus scrofa
Sus scrofa domestica
Oligo Array in situ oligonucleotide, NimbleGen Sus scrofa 2.1M CGH array [120529_Sscr_10_2_WG_JH_CGH_HX1], Annotation in this record based on NCBI Sscrofa 10.2 2.1M probes in total
10 GPL11314 NimbleGen Bos taurus UMD3.0 2.1M WG HD CGH 2,166,464 United States Department of Agriculture 2010-12-14 NimbleGen Systems, Inc. Bos taurus
Bos taurus
Oligo Array in situ oligonucleotide, NimbleGen Bos taurus UMD3.0 2.1M WG HD CGH, This array was designed based on Btau_UMD3.0. The Btau_UMD3.1 assembly is identical in almost all respects to UMD3.0. All chromosomes are unchanged. For additional information, see http://www.cbcb.umd.edu/research/bos_taurus_assembly.shtml . The supplementary file 'GPL11314_Btau_4.0.txt' contains the results of LIFTOVER (default setting) to convert the positions of probes from UMD3.0 to Btau_4.0. About 95% (~2,066,000) of the probes were converted successfully.
11 GPL10680 NimbleGen Mouse 2.1M array [Feinberg_MM8_Me_HX1] 2,164,512 Johns Hopkins University School of Medicine 2010-07-14 NimbleGen Mus musculus
Mus musculus
Oligo Array in situ oligonucleotide, NimbleGen Mouse 2.1M array [Feinberg_MM8_Me_HX1], Annotation based on UCSC mouse genome assembly Feb 2006 (mm8)
12 GPL9821 NimbleGen T. reesei 2.1M HD2 arrayCGH 2,163,898 VTT Technical Research Centre 2009-12-22 NimbleGen Hypocrea jecorina
Hypocrea jecorina
Oligo Array in situ oligonucleotide, NimbleGen T. reesei 2.1M HD2 arrayCGH, Build: Trichoderma reesei v2.0 (http://genome.jgi-psf.org/Trire2/Trire2.home.html)
13 GPL9275 NimbleGen Human 2.1M array 2,162,406 Johns Hopkins University School of Medicine 2009-09-23 NimbleGen Homo sapiens
Homo sapiens
Oligo Array in situ oligonucleotide, NimbleGen Human 2.1M array, Annotation based on UCSC human genome assembly March 2006 (HG18)
14 GPL10815 NimbleGen Human 2.1M array [080131_HG18_WG_CGH_v2DCR_HX1] 2,161,679 Cold Spring Harbor Lab 2010-08-17 NimbleGen Homo sapiens
Homo sapiens
Oligo Array in situ oligonucleotide, NimbleGen Human 2.1M array [080131_HG18_WG_CGH_v2DCR_HX1], Annotation in this record based on NCBI human build 36. designname: 080131_HG18_WG_CGH_v2DCR_HX1 designid: 7058
15 GPL15056 NimbleGen Zilberman Arabidopsis HD2 array [080709_AT8_DZ_ChIP_HX1] 2,160,801 University of California at Berkeley 2011-12-23 NimbleGen Arabidopsis thaliana
Arabidopsis thaliana
Oligo Array in situ oligonucleotide, NimbleGen Zilberman Arabidopsis HD2 array [080709_AT8_DZ_ChIP_HX1], TAIR 8 designname: 080709_AT8_DZ_ChIP_HX1 designid: 7848
16 GPL9824 HG18_Aug09_HD2.3_Custom_Promoter (NimbleGen) 2,160,368 UT Southwestern Medical Center 2009-12-23 NimbleGen Homo sapiens
Homo sapiens
Oligo Array in situ oligonucleotide, HG18_Aug09_HD2.3_Custom_Promoter (NimbleGen), HG18 The array tiles 23550 RefSeq genes from -3000 to +7000 relative to the TSS, with a mean probe spacing of 75bp
17 GPL10683 NimbleGen Mouse 2.1M array [100512_MM8_CHARM_HX1] 2,157,430 Johns Hopkins University School of Medicine 2010-07-14 NimbleGen Mus musculus
Mus musculus
Oligo Array in situ oligonucleotide, NimbleGen Mouse 2.1M array [100512_MM8_CHARM_HX1], Annotation based on UCSC mouse genome assembly Feb 2006 (mm8)
18 GPL10559 NimbleGen HD2 Human whole genome custom array 2.1M [090310_LP_til_HX1] 2,151,683 Netherlands Cancer Institute 2010-06-17 Nimblegen Homo sapiens
Homo sapiens
Oligo Array in situ oligonucleotide, NimbleGen HD2 Human whole genome custom array 2.1M [090310_LP_til_HX1], Custom made nimblegen array NimbleGen file 090310_LP_til_HX1.ndf linked below as supplementary file. Platform table annotations based on NCBI36 build.
19 GPL13611 NimbleGen Human 2.0M array [091020_HG19_CHARM_HX1] 2,151,397 NimbleGen Systems, Inc. 2011-05-18 NimbleGen Homo sapiens
Homo sapiens
Oligo Array in situ oligonucleotide, NimbleGen Human 2.0M array [091020_HG19_CHARM_HX1], Annotation based on UCSC human genome assembly Feb 2009 (hg19) designname=091020_HG19_CHARM_HX1 designid=10816
20 GPL13134 NimbleGen Human 2.1M array [100428_HG19_CHARM_HX1] 2,151,393 Johns Hopkins University School of Medicine 2011-02-08 NimbleGen Homo sapiens
Homo sapiens
Oligo Array in situ oligonucleotide, NimbleGen Human 2.1M array [100428_HG19_CHARM_HX1], Custom design. Annotation based on UCSC human genome assembly Feb 2009 (HG19)
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