Gene Expression Omnibus (GEO) Overview Version：2013-06-15Japanese page
An overview of the GEO entries broken down by the measurement platforms and the features of the measured samples.
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Data Unit : [ DataSet / Sample / Platform ] Show explanation>> <<Hide explanation
DataSet : Series(GSE) x Platform(GPL). A set of related gene expression data.
Sample : Biological materials.
platform : Methods or instruments used for the gene expression profilings.
The numbers shown in the tabs are the numbers of the data (series, samples or platforms) belonging to the groups.
  Human
(37)		   Primates
(0)		   Rodents
(45)		   Mammals
(4)		   Vertebrates
(7)		   Invertebrates
(19)		   Plants
(33)		   Bacteria
(27)		   Viruses
(0)		   Phages
(0)		   Unclassified
(8)		   All
(181)		  
  SAGE NlaIII
(0)		   SAGE RsaI
(0)		   SAGE Sau3A
(0)		   MPSS
(0)		   GeneChip
(6)		   Tiling Array
(4)		   cDNA Array
(58)		   Oligo Array
(102)		   Bead Array
(4)		   Protein Array
(0)		   Antibody
(1)		   RT-PCR
(2)		   HT-Seq
(3)		   Other
(1)		   All
(181)		  
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Platform ID Title Number of the probes Institute Submission date Manufacturer Species Platform class Reasoning of the classification
Keywords used for the classification are shown with bold font.
1 GPL10125 Nimblegen Rhipicephalus microplus 385K microarray 385,770 DEEDI 2010-03-03 NimbleGen Systems Inc. Rhipicephalus microplus
Rhipicephalus microplus		 Oligo Array in situ oligonucleotide, Nimblegen Rhipicephalus microplus 385K microarray,
2 GPL5711 Sentrix BeadChip Array HumanHap300 Genotyping BeadChip 317K, TagSNP Phase I, v1.1 317,503 QIMR 2007-08-06 Illumina,Inc. Homo sapiens
Homo sapiens		 Oligo Array spotted oligonucleotide, Sentrix BeadChip Array HumanHap300 Genotyping BeadChip 317K, TagSNP Phase I, v1.1,
3 GPL14873 Agilent-027516 VPC Human 180K v2 180,880 Queensland University of Technology; University of British Columbia 2011-11-10 Agilent Homo sapiens
Homo sapiens		 Oligo Array in situ oligonucleotide, Agilent-027516 VPC Human 180K v2, annotation from RefSeq and EntrezGene Database (downloaded: December, 2011)
4 GPL14984 Agilent-033023 Hzea_Virus_2directions [Feature Number Version] 180,880 The University of Queensland 2011-12-08 Agilent Technologies Helicoverpa zea
Helicoverpa zea		 Oligo Array in situ oligonucleotide, Agilent-033023 Hzea_Virus_2directions [Feature Number Version], 29,586 H.zea transcript sequences obtained from denovo assembly were reverse transcribed and then combined with the original sequences to form a final target sequence file that contains 59,172 sequences. Based on these 59,172 sequences, eArray was used to design 3 probes per target, with the options for best distribution method and no 3' bias. Then, all probes with potential cross hybridization were removed, resulting in 153,492 probes. This probe set was divided into 3 probe groups (eArray probe format: complete, Ms-excel), each contains 60,000, 60,000 and 33,000 probes. Another probe set for 135 virus genes and 16 selected insect genes (3 probes/target), which were replicated 10 times. These four probe groups were then used to design the 4x180,000 Agilent arrays.
5 GPL16604 Agilent-032034 VPC Human 180K v3 (Probe Name version) 175,337 Queensland University of Technology; University of British Columbia 2013-02-07 Agilent Homo sapiens
Homo sapiens		 Oligo Array in situ oligonucleotide, Agilent-032034 VPC Human 180K v3 (Probe Name version), annotation from RefSeq and EntrezGene Database (downloaded: April, 2012)
6 GPL8742 AWRI_Oenoccocus_oeni_105kv1.0_016965 71,210 The Australian Wine Research Institute 2009-06-18 Agilent Oenococcus oeni
Oenococcus oeni		 Oligo Array in situ oligonucleotide, AWRI_Oenoccocus_oeni_105kv1.0_016965,
7 GPL17190 Nimblegen custom 12x135K chicken high-density multiplex microarray 47,918 CSIRO 2013-05-23 Nimblegen Systems Inc. Gallus gallus
Gallus gallus		 Oligo Array in situ oligonucleotide, Nimblegen custom 12x135K chicken high-density multiplex microarray, A custom designed NimbleGen 12x135K chicken high-density multiplex microarray was used in this experiment. The microarray contained a set of 65,849 long oligonucleotides (60-75nt) based upon chicken UniGene sequence families. Each gene was represented by at least two independently designed probes and each probe was present in duplicate on the array. Each fabricated glass slide contained 12 identical arrays that could were independently hybridized.
8 GPL10875 Agilent-024207 Schistosoma mansoni 45K array (Feature Number version) 45,220 QIMR 2010-09-02 Agilent Technologies Schistosoma mansoni
Schistosoma mansoni		 Oligo Array in situ oligonucleotide, Agilent-024207 Schistosoma mansoni 45K array (Feature Number version), schisto-v1_1164838824901_1244575027696 Arrays of this design have barcodes that begin with 16024207 or 2524207. Orientation: Features are numbered numbered Left-to-Right, Top-to-Bottom as scanned by an Agilent scanner (barcode on the left, DNA on the back surface, scanned through the glass), matching the FeatureNum output from Agilent's Feature Extraction software. The ID column represents the Agilent Feature Extraction feature number. Rows and columns are numbered as scanned by an Axon Scanner (barcode on the bottom, DNA on the front surface). To match data scanned on an Axon scanner, use the RefNumber column contained in the Agilent-provided GAL file as the ID_REF column in sample submissions.
9 GPL13794 USC_F.merg_44K_v1 45,220 University of the Sunshine Coast 2011-06-30 Agilent Fenneropenaeus merguiensis
Fenneropenaeus merguiensis		 Oligo Array in situ oligonucleotide, USC_F.merg_44K_v1, Accession strings in the GEO submission refer only to the EST names given to transcriptome sequences by the sequencing company. No annotation/sequence ID from a public database has been included, as sequence information for prawns is very limited and a large proportion of the sequencs were unable to be annotated.
10 GPL7160 Agilent-016061 QIMR Schistosoma 44k v 1.0 45,220 QIMR 2008-08-13 Agilent Schistosoma japonicum,Schistosoma mansoni
Schistosoma japonicum,Schistosoma mansoni		 Oligo Array in situ oligonucleotide, Agilent-016061 QIMR Schistosoma 44k v 1.0,
11 GPL9759 QIMR/Agilent-023536 Schistosoma japonicum 44k array_New 2009 Sj 45,220 QIMR 2009-12-07 Agilent Technologies Schistosoma japonicum
Schistosoma japonicum		 Oligo Array in situ oligonucleotide, QIMR/Agilent-023536 Schistosoma japonicum 44k array_New 2009 Sj, Arrays of this design have barcodes that begin with 16023536 or 2523536. Orientation: Features are numbered numbered Left-to-Right, Top-to-Bottom as scanned by an Agilent scanner (barcode on the left, DNA on the back surface, scanned through the glass), matching the FeatureNum output from Agilent's Feature Extraction software. The ID column represents the Agilent Feature Extraction feature number. Rows and columns are numbered as scanned by an Axon Scanner (barcode on the bottom, DNA on the front surface). To match data scanned on an Axon scanner, use the RefNumber column contained in the Agilent-provided GAL file as the ID_REF column in sample submissions.
12 GPL6076 Agilent- Whole Human Genome Oligo Microarray G4112A condensed 41,059 University of Queensland 2007-11-01 Agilent Technologies Homo sapiens
Homo sapiens		 Oligo Array in situ oligonucleotide, Agilent- Whole Human Genome Oligo Microarray G4112A condensed, This single 44K formatted microarray represents a compiled view of the human genome as it is understood today. The sequence information used to design this product was derived from a broad survey of well known sources such as RefSeq, Goldenpath, Ensembl, Unigene and others. The resulting view of the human genome covers 41K unique genes and transcripts which have been verified and optimized by alignment to the human genome assembly and by Agilent's Empirical Validation process. Arrays of this design have barcodes that begin with 16012391 or 2512391. Orientation: Features are numbered numbered Left-to-Right, Top-to-Bottom as scanned by an Agilent scanner (barcode on the left, DNA on the back surface, scanned through the glass), matching the FeatureNum output from Agilent's Feature Extraction software. The ID column represents the Agilent Feature Extraction feature number. Rows and columns are numbered as scanned by an Axon Scanner (barcode on the bottom, DNA on the front surface). To match data scanned on an Axon scanner, use the RefNumber column contained in the Agilent-provided GAL file as the ID_REF column in sample submissions.
13 GPL16487 Agilent-037288 Timecourse_Insect_Virus 34,489 The University of Queensland 2013-01-10 Agilent Technologies Helicoverpa zea,Helicoverpa armigera
Helicoverpa zea,Helicoverpa armigera		 Oligo Array in situ oligonucleotide, Agilent-037288 Timecourse_Insect_Virus, A custom 8x60,000 SurePrint Agilent expression slide (Agilent, Santa Clara, CA) with probes including probes for 27,400 H. zea sequences that were validated previously (Nguyen et al., 2012. PLOS ONE, 7(5), e36324) and all 134 H. armigera single-capsid nucleopolyhedrovirus (HearNPV) genes (Accession: NC_002654). Arrays of this design have barcodes that begin with 16037288 or 2537288.
14 GPL4899 Compugen mouse 22K array (UQ) 30,000 University of Melbourne 2007-02-28 SRC Microarray Facility, University of Queensland, Australia Mus musculus
Mus musculus		 Oligo Array spotted oligonucleotide, Compugen mouse 22K array (UQ),
15 GPL7621 JCVI Pseudomonas fluorescens Pf-5 28k v2.0 27,648 Macquarie University 2008-11-10 J. Craig Venter Institute unidentified
unidentified		 Oligo Array mixed spotted oligonucleotide/cDNA, JCVI Pseudomonas fluorescens Pf-5 28k v2.0,
16 GPL13885 Agilent-021158 Mouse CNV Microarray (Probe Name version) 27,274 The University of Queensland 2011-07-11 Agilent Mus musculus
Mus musculus		 Oligo Array in situ oligonucleotide, Agilent-021158 Mouse CNV Microarray (Probe Name version), Platform is based on mouse genome build NCBI37/mm9.
17 GPL15294 TIGR PFGRC Aspergillus nidulans version 1 array designed primarily based on strain FGSC A4 25,392 University of New England 2012-03-02 TIGR PFGRC (The Pathogen Functional Genomics Resource Center) Emericella nidulans
Emericella nidulans		 Oligo Array spotted oligonucleotide, TIGR PFGRC Aspergillus nidulans version 1 array designed primarily based on strain FGSC A4, This set includes 11481 oligonucleotides (ss oligo 70 mer), has 23962 spots (2x oligo replicates) distributed in 48 blocks.
18 GPL7620 JCVI Pseudomonas fluorescens Pf-5 23k v1.0 23,232 Macquarie University 2008-11-10 J. Craig Venter Institute unidentified
unidentified		 Oligo Array mixed spotted oligonucleotide/cDNA, JCVI Pseudomonas fluorescens Pf-5 23k v1.0,
19 GPL8926 PC Human Operon 21k v2 23,232 Queensland Institute of Medical Research 2009-07-24 Microarray Facility - the Prostate Centre at Vancouver General Hospital Homo sapiens
Homo sapiens		 Oligo Array spotted oligonucleotide, PC Human Operon 21k v2,
20 GPL1747 Ramaciotti Centre 10k combined Rat Oligo 23,040 St Vincents Institute 2004-12-13 Rattus norvegicus
Rattus norvegicus		 Oligo Array spotted oligonucleotide, Ramaciotti Centre 10k combined Rat Oligo, Compugen and Operon oligo sets
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