Gene Expression Omnibus (GEO) Overview Version´╝Ü2014-04-12Japanese page
An overview of the GEO entries broken down by the measurement platforms and the features of the measured samples.

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RSS
Data Unit : [ DataSet / Sample / Platform ] Show explanation>> <<Hide explanation
DataSet : Series(GSE) x Platform(GPL). A set of related gene expression data.
Sample : Biological materials.
platform : Methods or instruments used for the gene expression profilings.
The numbers shown in the tabs are the numbers of the data (series, samples or platforms) belonging to the groups.
  Human
(149)
  Primates
(1)
  Rodents
(0)
  Mammals
(0)
  Vertebrates
(0)
  Invertebrates
(0)
  Plants
(61)
  Bacteria
(0)
  Viruses
(1)
  Phages
(0)
  Unclassified
(0)
  All
(470)
 
  SAGE NlaIII
(0)
  SAGE RsaI
(0)
  SAGE Sau3A
(0)
  MPSS
(0)
  GeneChip
(0)
  Tiling Array
(0)
  cDNA Array
(123)
  Oligo Array
(237)
  Bead Array
(0)
  Protein Array
(0)
  Antibody
(0)
  RT-PCR
(0)
  HT-Seq
(0)
  Other
(0)
  All
(470)
 
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Platform ID Title Number of the probes Institute Submission date Manufacturer Species Platform class Reasoning of the classification
Keywords used for the classification are shown with bold font.
1 GPL10616 NimbleGen Homo sapiens 2.1 M promoter 2,125,410 Charite 2010-06-28 NimbleGen Homo sapiens
Homo sapiens
Oligo Array in situ oligonucleotide, NimbleGen Homo sapiens 2.1 M promoter,
2 GPL16060 Agilent-036031 Schizosaccharomyces pombe sp10b [ProbeName version] 967,070 Biochemie Zentrum Heidelebrg 2012-09-13 Agilent Technologies Schizosaccharomyces pombe
Schizosaccharomyces pombe
Oligo Array in situ oligonucleotide, Agilent-036031 Schizosaccharomyces pombe sp10b [ProbeName version], S.p. 10 bp res Arrays of this design have barcodes that begin with 16036031 or 2536031.
3 GPL13910 NimbleGen Human HG18 whole genome CGH 3x720K 719,690 Saarland University 2011-07-13 NimbleGen Homo sapiens
Homo sapiens
Oligo Array in situ oligonucleotide, NimbleGen Human HG18 whole genome CGH 3x720K, Annotation in this record based on NCBI human build 36. whole genome, CGH with a median spacing of 2509 bp native array description file : 100718_HG18_WG_CGH_v3.1_HX3.ndf native array description file : 100718_HG18_WG_CGH_v3.1_HX3.pos
4 GPL17827 Nimblegen custom Boechera CGH array 100811_Boechera_TS_CGH 719,345 IPK Gatersleben 2013-10-23 Roche NimbleGen Boechera stricta,Boechera holboellii,Boechera divaricarpa
Boechera stricta,Boechera holboellii,Boechera divaricarpa
Oligo Array in situ oligonucleotide, Nimblegen custom Boechera CGH array 100811_Boechera_TS_CGH, native array description file : 100811_Boechera_TS_CGH.ndf native array description file : 100811_Boechera_TS_CGH.pos
5 GPL16605 NimbleGen_MM9_3x720K_Refseq_Promoter [090618_MM9_Refseq_Prom_ChIP] 714,900 EMBL 2013-02-07 Nimblegen Mus musculus
Mus musculus
Oligo Array in situ oligonucleotide, NimbleGen_MM9_3x720K_Refseq_Promoter [090618_MM9_Refseq_Prom_ChIP],
6 GPL13168 BaSysBio Bacillus subtilis T2 385K array [090325_CBS_DTU_Bsub_T2] 383,238 Greifswald University 2011-02-14 NimbleGen Bacillus subtilis subsp. subtilis str. 168
Bacillus subtilis subsp. subtilis str. 168
Oligo Array in situ oligonucleotide, BaSysBio Bacillus subtilis T2 385K array [090325_CBS_DTU_Bsub_T2], AL009126.3 090325_CBS_DTU_Bsub_T2.ndf 090325_CBS_DTU_Bsub_T2.pos
7 GPL7285 NimbleGen DMEL ChiP Set 1 of 3 382,343 Justus-Liebig-University Giessen 2008-09-11 Roche NimbleGen Drosophila melanogaster
Drosophila melanogaster
Oligo Array spotted oligonucleotide, NimbleGen DMEL ChiP Set 1 of 3,
8 GPL7286 NimbleGen DMEL ChiP Set 2 of 3 382,343 Justus-Liebig-University Giessen 2008-09-11 Roche NimbleGen Drosophila melanogaster
Drosophila melanogaster
Oligo Array spotted oligonucleotide, NimbleGen DMEL ChiP Set 2 of 3,
9 GPL7287 NimbleGen DMEL ChiP Set 3 of 3 382,342 Justus-Liebig-University Giessen 2008-09-11 Roche NimbleGen Drosophila melanogaster
Drosophila melanogaster
Oligo Array spotted oligonucleotide, NimbleGen DMEL ChiP Set 3 of 3,
10 GPL13648 Agilent-021412 nONCOchip_1.0 021253 243,504 Fraunhofer IZI 2011-05-25 Agilent Technologies Homo sapiens
Homo sapiens
Oligo Array in situ oligonucleotide, Agilent-021412 nONCOchip_1.0 021253, Arrays of this design have barcodes that begin with 16021412 or 2521412. Orientation: Features are numbered numbered Left-to-Right, Top-to-Bottom as scanned by an Agilent scanner (barcode on the left, DNA on the back surface, scanned through the glass), matching the FeatureNum output from Agilent's Feature Extraction software. The ID column represents the Agilent Feature Extraction feature number. Rows and columns are numbered as scanned by an Axon Scanner (barcode on the bottom, DNA on the front surface). To match data scanned on an Axon scanner, use the RefNumber column contained in the Agilent-provided GAL file as the ID_REF column in sample submissions.
11 GPL8544 Human CpG Island Microarray 244K (Agilent-014791) with extended custom annotation 243,504 University Hospital Regensburg 2009-05-12 Agilent Technologies Homo sapiens
Homo sapiens
Oligo Array in situ oligonucleotide, Human CpG Island Microarray 244K (Agilent-014791) with extended custom annotation,
12 GPL9666 University Hospital Regensburg Human promoter 243K array 243,185 University Hospital Regensburg 2009-11-13 Agilent Technologies Homo sapiens
Homo sapiens
Oligo Array in situ oligonucleotide, University Hospital Regensburg Human promoter 243K array, Custom designed oligonucleotide array comprising roughly 17.000 annotated promoter regions (-4000 - +1000 around transcription start sites). In addition, four selected loci are tiled over a large genomic interval, including CHIT1/CHI3L1 (170 kb), CCL13 (140 kb), SPI1 (60 kb), and TLR4 (75 kb).
13 GPL8085 Murine custom chip-on-chip 244k oligo array (AMADID: 018915) 240,662 University Hospital Regensburg 2009-01-16 Agilent Mus musculus
Mus musculus
Oligo Array in situ oligonucleotide, Murine custom chip-on-chip 244k oligo array (AMADID: 018915),
14 GPL16108 Agilent-014791 Human CpG Island ChIP-on-Chip Microarray 244K (G4492A) (Probe Name version)_NCBI36/hg18 203,165 DKFZ 2012-09-26 Agilent Technologies Homo sapiens
Homo sapiens
Oligo Array in situ oligonucleotide, Agilent-014791 Human CpG Island ChIP-on-Chip Microarray 244K (G4492A) (Probe Name version)_NCBI36/hg18, Human CpG Island Chip-on-Chip Set 244K Probe mapping based on genome build NCBI36/hg18.
15 GPL3872 Nimblegen Human custom array 195,713 Fraunhofer Institut 2006-06-13 Nimblegen Homo sapiens
Homo sapiens
Oligo Array in situ oligonucleotide, Nimblegen Human custom array,
16 GPL17964 Agilent-037305 SurePrint G3 Human Custom CGH Microarray 4x180K 180,880 MPIMG 2013-11-19 Agilent Technologies Homo sapiens
Homo sapiens
Oligo Array in situ oligonucleotide, Agilent-037305 SurePrint G3 Human Custom CGH Microarray 4x180K, Arrays of this design have barcodes that begin with 16037305 or 2537305. Orientation: Features are numbered numbered Left-to-Right, Top-to-Bottom as scanned by an Agilent scanner (barcode on the left, DNA on the back surface, scanned through the glass), matching the FeatureNum output from Agilent's Feature Extraction software. The ID column represents the Agilent Feature Extraction feature number. Rows and columns are numbered as scanned by an Axon Scanner (barcode on the bottom, DNA on the front surface). To match data scanned on an Axon scanner, use the RefNumber column contained in the Agilent-provided GAL file as the ID_REF column in sample submissions.
17 GPL16059 Agilent-036227 Schizosaccharomyces pombe sp40c [ProbeName version] 176,037 Biochemie Zentrum Heidelebrg 2012-09-13 Agilent Technologies Schizosaccharomyces pombe
Schizosaccharomyces pombe
Oligo Array in situ oligonucleotide, Agilent-036227 Schizosaccharomyces pombe sp40c [ProbeName version], Tm optimized 75C Arrays of this design have barcodes that begin with 16036227 or 2536227.
18 GPL16058 Agilent-031109 Schizosaccharomyces pombe sp40a 029798 [ProbeName version] 174,569 Biochemie Zentrum Heidelebrg 2012-09-13 Agilent Technologies Schizosaccharomyces pombe
Schizosaccharomyces pombe
Oligo Array in situ oligonucleotide, Agilent-031109 Schizosaccharomyces pombe sp40a 029798 [ProbeName version], Arrays of this design have barcodes that begin with 16031109 or 2531109.
19 GPL13444 NimbleGen Mixed bacteria 080319_BK_mixed_bact_expr (technical proves averaged) 132,109 hospital university rostock 2011-04-22 NimbleGen Fusobacterium nucleatum,Streptococcus mutans UA159,Porphyromonas gingivalis W83,Aggregatibacter actinomycetemcomitans HK1651,Streptococcus sanguinis SK36
Fusobacterium nucleatum,Streptococcus mutans UA159,Porphyromonas gingivalis W83,Aggregatibacter actinomycetemcomitans HK1651,Streptococcus sanguinis SK36
Oligo Array in situ oligonucleotide, NimbleGen Mixed bacteria 080319_BK_mixed_bact_expr (technical proves averaged), 385K-format: 3 replicates of up to 13 probes per gene, 60-mer oligonucleotides, 3510 randomized sequence probes. The array includes probes for Porphyromonas gingivalis W83, Fusobacterium nucleatum DSMZ 25586, Streptococcus sanguinis SK36, Actinobacillus actinomycetemcomitans HK1651, and Streptococcus mutans UA159. A condensed version of this platform is assigned accession number GPL10873. Alternative version of this Platform including probes only for Streptococcus sanguinis SK36 is assigned accession number GPL15399.
20 GPL13941 MPIMarburg_Piriformospora_indica_105k_v1.0 105,072 Max Planck Institute (MPI) for Terrestrial Microbiology 2011-07-19 Agilent Piriformospora indica
Piriformospora indica
Oligo Array in situ oligonucleotide, MPIMarburg_Piriformospora_indica_105k_v1.0,
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