Gene Expression Omnibus (GEO) Overview Version´╝Ü2014-04-12Japanese page
An overview of the GEO entries broken down by the measurement platforms and the features of the measured samples.
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Data Unit : [ DataSet / Sample / Platform ] Show explanation>> <<Hide explanation
DataSet : Series(GSE) x Platform(GPL). A set of related gene expression data.
Sample : Biological materials.
platform : Methods or instruments used for the gene expression profilings.
The numbers shown in the tabs are the numbers of the data (series, samples or platforms) belonging to the groups.
  Human
(109)
  Primates
(0)
  Rodents
(35)
  Mammals
(5)
  Vertebrates
(2)
  Invertebrates
(30)
  Plants
(45)
  Bacteria
(55)
  Viruses
(3)
  Phages
(0)
  Unclassified
(11)
  All
(296)
 
  SAGE NlaIII
(2)
  SAGE RsaI
(0)
  SAGE Sau3A
(0)
  MPSS
(0)
  GeneChip
(20)
  Tiling Array
(13)
  cDNA Array
(67)
  Oligo Array
(143)
  Bead Array
(21)
  Protein Array
(0)
  Antibody
(0)
  RT-PCR
(4)
  HT-Seq
(18)
  Other
(8)
  All
(296)
 
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Platform ID Title Number of the probes Institute Submission date Manufacturer Species Platform class Reasoning of the classification
Keywords used for the classification are shown with bold font.
1 GPL6770 NimbleGen Mouse Promoter 393K Array, 1 of 2 392,778 University of California, Berkeley 2008-04-22 NimbleGen Mus musculus
Mus musculus
Oligo Array in situ oligonucleotide, NimbleGen Mouse Promoter 393K Array, 1 of 2,
2 GPL6771 NimbleGen Mouse Promoter 393K Array, 2 of 2 392,778 University of California, Berkeley 2008-04-22 NimbleGen Mus musculus
Mus musculus
Oligo Array in situ oligonucleotide, NimbleGen Mouse Promoter 393K Array, 2 of 2,
3 GPL6813 GenAu mouse chr17 1734 391,008 CeMM 2008-05-02 NimbleGen Mus musculus
Mus musculus
Oligo Array in situ oligonucleotide, GenAu mouse chr17 1734, single copy regions of mouse chr.17 (3021656bp-92867493bp) with custom repeat masking
4 GPL6815 GenAu mouse chr17 2588 390,547 CeMM 2008-05-02 NimbleGen Mus musculus
Mus musculus
Oligo Array in situ oligonucleotide, GenAu mouse chr17 2588, single copy regions of mouse chr.17 (3021656bp-92867493bp) with custom repeat masking
5 GPL6814 GenAu mouse chr17 2356 389,641 CeMM 2008-05-02 NimbleGen Mus musculus
Mus musculus
Oligo Array in situ oligonucleotide, GenAu mouse chr17 2356, single copy regions of mouse chr.17 (3021656bp-92867493bp) with custom repeat masking
6 GPL7009 Jones Lab Human PC3/PrEC selected promoter arrays, 20bp resolution, 389K 389,307 The Weizmann Institute 2008-06-30 Nimblegen Homo sapiens
Homo sapiens
Oligo Array in situ oligonucleotide, Jones Lab Human PC3/PrEC selected promoter arrays, 20bp resolution, 389K, The .ndf and .pos files have been linked below as supplementary files.
7 GPL6898 UC multi-primate Nimblegen microarray 388K 388,678 University of Chicago 2008-05-26 Nimblegen Macaca mulatta,Pan troglodytes,Homo sapiens
Macaca mulatta,Pan troglodytes,Homo sapiens
Oligo Array spotted oligonucleotide, UC multi-primate Nimblegen microarray 388K,
8 GPL6996 Nimblegen MM8 Mouse Promoter Array 376,413 UT Southwestern Medical Center 2008-06-25 Nimblegen Mus musculus
Mus musculus
Oligo Array spotted oligonucleotide, Nimblegen MM8 Mouse Promoter Array,
9 GPL6704 National University of Singapore NimbleGen 385K Promoter Array version 1 359,384 Genome Institute of Singapore 2008-04-08 NimbleGen Inc. Homo sapiens
Homo sapiens
Oligo Array in situ oligonucleotide, National University of Singapore NimbleGen 385K Promoter Array version 1,
10 GPL6680 BC Cancer Agency_E.coli_H.influenzae_P.aeruginosa_HumanChr6_340K array v1 339,153 BC Cancer Agency 2008-04-03 NimbleGen Systems, Inc. Pseudomonas aeruginosa,Escherichia coli,Haemophilus influenzae,Homo sapiens
Pseudomonas aeruginosa,Escherichia coli,Haemophilus influenzae,Homo sapiens
Oligo Array spotted oligonucleotide, BC Cancer Agency_E.coli_H.influenzae_P.aeruginosa_HumanChr6_340K array v1,
11 GPL6944 Agilent Technologies Human Genome CNV microarray set G4423B (AMADID 018897) 243,504 Agilent Technologies 2008-06-09 Agilent Technologies Homo sapiens
Homo sapiens
Oligo Array in situ oligonucleotide, Agilent Technologies Human Genome CNV microarray set G4423B (AMADID 018897), Orientation: Features are numbered numbered Left-to-Right, Top-to-Bottom as scanned by an Agilent scanner (barcode on the left, DNA on the back surface, scanned through the glass), matching the FeatureNum output from Agilent's Feature Extraction software. The ID column represents the Agilent Feature Extraction feature number. NCBI build 36, hg18
12 GPL6945 Agilent Technologies Human Genome CNV microarray set G4423B (AMADID 018898) 243,504 Agilent Technologies 2008-06-09 Agilent Technologies Homo sapiens
Homo sapiens
Oligo Array in situ oligonucleotide, Agilent Technologies Human Genome CNV microarray set G4423B (AMADID 018898), Orientation: Features are numbered numbered Left-to-Right, Top-to-Bottom as scanned by an Agilent scanner (barcode on the left, DNA on the back surface, scanned through the glass), matching the FeatureNum output from Agilent's Feature Extraction software. The ID column represents the Agilent Feature Extraction feature number. NCBI build 36, hg18
13 GPL6949 Agilent-019182 Drosophila melanogaster Whole Genome ChIP-on-Chip Set 244K, Microarray 1 of 3 243,504 University of Chicago 2008-06-10 Agilent Technologies Drosophila melanogaster
Drosophila melanogaster
Oligo Array in situ oligonucleotide, Agilent-019182 Drosophila melanogaster Whole Genome ChIP-on-Chip Set 244K, Microarray 1 of 3,
14 GPL6950 Agilent-019183 Drosophila melanogaster Whole Genome ChIP-on-Chip Set 244K, Microarray 2 of 3 243,504 University of Chicago 2008-06-10 Agilent Technologies Drosophila melanogaster
Drosophila melanogaster
Oligo Array in situ oligonucleotide, Agilent-019183 Drosophila melanogaster Whole Genome ChIP-on-Chip Set 244K, Microarray 2 of 3,
15 GPL6951 Agilent-019184 Drosophila melanogaster Whole Genome ChIP-on-Chip Set 244K, Microarray 3 of 3 243,504 University of Chicago 2008-06-10 Agilent Technologies Drosophila melanogaster
Drosophila melanogaster
Oligo Array in situ oligonucleotide, Agilent-019184 Drosophila melanogaster Whole Genome ChIP-on-Chip Set 244K, Microarray 3 of 3,
16 GPL6866 NimbleGen HG18_60mer_expr 47,633 Nevada Cancer Institute 2008-05-15 NimbleGen Homo sapiens
Homo sapiens
Oligo Array in situ oligonucleotide, NimbleGen HG18_60mer_expr,
17 GPL6864 Agilent-015241 Rice Gene Expression 4x44K Microarray (Feature Number version) 45,220 Agilent Technologies 2008-05-15 Agilent Technologies Oryza sativa
Oryza sativa
Oligo Array in situ oligonucleotide, Agilent-015241 Rice Gene Expression 4x44K Microarray (Feature Number version), *** A different version of this platform with the Agilent Probe names in the ID column is assigned accession number GPL8852.
18 GPL6843 Custom Agilent peanut oligonucleotide microarray (4 x 44k) 44,415 USDA-ARS Lubbock & Texas Tech University 2008-05-07 Agilent Arachis hypogaea
Arachis hypogaea
Oligo Array in situ oligonucleotide, Custom Agilent peanut oligonucleotide microarray (4 x 44k), 4 x 44k arrays (22k replicated)
19 GPL6961 Dmel_chrX_XHet 43,982 Netherlands Cancer Institute 2008-06-14 Agilent Technologies Drosophila melanogaster
Drosophila melanogaster
Oligo Array spotted oligonucleotide, Dmel_chrX_XHet, The array is a custom designed, high density, 4x44k Agilent microarray. The probe sequences and locations are based on the complete D. melanogaster genome sequence, release 5, downloaded from ftp.fruitfly.org at March 7, 2007. The median probe spacing is 136 bp. Probe sequences do not contain the sequence motif GATC, the recognition sequence of Dam. The array was designed to accommodate both DamID and Chip-on-chip experiments.
20 GPL6989 Udall global cotton16 EST assembly array 42,459 University of Georgia 2008-06-23 Nimblegen Gossypium
Gossypium
Oligo Array in situ oligonucleotide, Udall global cotton16 EST assembly array, We have designed and implemented a novel NimbleGen microarray platform capable of measuring global gene expression in Gossypium species. This custom designed microarray features ~60mer generic probes those were created by first assembling EST contigs from G.arboreum, G.raimondii, and G. hirsutum libraries and has the ability to measure total gene expression.
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