Gene Expression Omnibus (GEO) Overview

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DataSet	:	Series(GSE) x Platform(GPL). A set of related gene expression data.
Sample	:	Biological materials.
platform	:	Methods or instruments used for the gene expression profilings.

Human
(131)

Primates
(0)

Phages
(0)

All
(410)

SAGE NlaIII
(0)

SAGE RsaI
(0)

SAGE Sau3A
(0)

MPSS
(0)

Oligo Array
(213)

Protein Array
(0)

Antibody
(0)

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	Platform ID	Title	Number of the probes	Institute	Submission date	Manufacturer	Species	Platform class	Reasoning of the classification Keywords used for the classification are shown with bold font.
1	GPL17003	UHN Microarray Centre Drosophila melanogaster D14k3	8,369	University of Kiel, Germany	2013-04-10	University Health Network Microarray Centre (www.microarrays,ca, Toronto, Canada)	Drosophila melanogaster	Oligo Array	spotted oligonucleotide, UHN Microarray Centre Drosophila melanogaster D14k3,
2	GPL16876	Agilent-020382 Human Custom Microarray 44k (Feature Number version)	44,708	DKFZ	2013-03-26	Agilent Technologies	Homo sapiens	Oligo Array	in situ oligonucleotide, Agilent-020382 Human Custom Microarray 44k (Feature Number version), NB-CustomArray_4x44k
3	GPL16865	Agilent-013282 Human Genome CGH Microarray (Feature number version) [ALT to GPL2897 minus400]	43,890	DKFZ	2013-03-25	Agilent Technologies	Homo sapiens	Oligo Array	in situ oligonucleotide, Agilent-013282 Human Genome CGH Microarray (Feature number version) [ALT to GPL2897 minus400],
4	GPL16796	Agilent-041078 mouse_60k_MH	54,677	Helmholtz-Zentrum MÃƒÂ¼nchen	2013-03-15	Agilent Technologies	Mus musculus	Oligo Array	in situ oligonucleotide, Agilent-041078 mouse_60k_MH, Arrays of this design have barcodes that begin with 16041078 or 2541078. Orientation: Features are numbered numbered Left-to-Right, Top-to-Bottom as scanned by an Agilent scanner (barcode on the left, DNA on the back surface, scanned through the glass), matching the FeatureNum output from Agilent's Feature Extraction software. The ID column represents the Agilent Feature Extraction feature number. Rows and columns are numbered as scanned by an Axon Scanner (barcode on the bottom, DNA on the front surface). To match data scanned on an Axon scanner, use the RefNumber column contained in the Agilent-provided GAL file as the ID_REF column in sample submissions.
5	GPL16725	Agilent-026176 Alcanivorax borkumensis SK2 (Probe Name version)	8,353	Goethe University Frankfurt	2013-02-26	Agilent Technologies	Alcanivorax borkumensis SK2	Oligo Array	in situ oligonucleotide, Agilent-026176 Alcanivorax borkumensis SK2 (Probe Name version), Alcanivorax borkumensis SK2 Gene expression array Arrays of this design have barcodes that begin with 16026176 or 2526176. Orientation: Features are numbered numbered Left-to-Right, Top-to-Bottom as scanned by an Agilent scanner (barcode on the left, DNA on the back surface, scanned through the glass), matching the FeatureNum output from Agilent's Feature Extraction software. The ID column represents the Agilent Feature Extraction feature number. Rows and columns are numbered as scanned by an Axon Scanner (barcode on the bottom, DNA on the front surface). To match data scanned on an Axon scanner, use the RefNumber column contained in the Agilent-provided GAL file as the ID_REF column in sample submissions.
6	GPL16691	Agilent-026176 Alcanivorax borkumensis SK2 (Feature Number version)	15,744	Goethe University Frankfurt	2013-02-19	Agilent Technologies	Alcanivorax borkumensis SK2	Oligo Array	in situ oligonucleotide, Agilent-026176 Alcanivorax borkumensis SK2 (Feature Number version), Alcanivorax borkumensis SK2 Gene expression array Arrays of this design have barcodes that begin with 16026176 or 2526176. Orientation: Features are numbered numbered Left-to-Right, Top-to-Bottom as scanned by an Agilent scanner (barcode on the left, DNA on the back surface, scanned through the glass), matching the FeatureNum output from Agilent's Feature Extraction software. The ID column represents the Agilent Feature Extraction feature number. Rows and columns are numbered as scanned by an Axon Scanner (barcode on the bottom, DNA on the front surface). To match data scanned on an Axon scanner, use the RefNumber column contained in the Agilent-provided GAL file as the ID_REF column in sample submissions.
7	GPL16605	NimbleGen_MM9_3x720K_Refseq_Promoter [090618_MM9_Refseq_Prom_ChIP]	714,900	EMBL	2013-02-07	Nimblegen	Mus musculus	Oligo Array	in situ oligonucleotide, NimbleGen_MM9_3x720K_Refseq_Promoter [090618_MM9_Refseq_Prom_ChIP],
8	GPL16519	NimbleGen_Botrytis_4plex [080425_Botrytis_4plex_expr]	21,200	University of Kaiserslautern	2013-01-17	NimbleGen	Botryotinia fuckeliana B05.10,unidentified	Oligo Array	spotted oligonucleotide, NimbleGen_Botrytis_4plex [080425_Botrytis_4plex_expr], NimbleGen design name: 080425_Botrytis_4plex_expr. Order IDs: 16947 and 25188. Probe length: 60mers. Three probes per gene. The design includes random GC and other control probes. The Platform data table reflects a condensed representation of the expression array's replicate (SEQ_ID) features. The .ndf and .ngd files are linked below as supplementary files. GeneID number for the ORF to which the indicated probe is directed; Gene-ID is similar to Seq-ID but underscore was replaced by point (see ngf file). For further gene infomation these numbers can be submitted to http://www.broadinstitute.org/annotation/genome/botrytis_cinerea/FeatureSearch.html.
9	GPL16277	UKD Gastroenterologie Mus musculus oligo array	288	UniversitÃƒÂ¤tsklinikum DÃƒÂ¼sseldorf	2012-11-14	[UKD Gastroenterologie]-[Gehrmann]	Mus musculus	Oligo Array	spotted oligonucleotide, UKD Gastroenterologie Mus musculus oligo array,
10	GPL16115	MOLMIBI_CH34_array	15,207	Martin-Luther-University Halle-Wittenberg	2012-09-28	Agilent	Cupriavidus metallidurans CH34	Oligo Array	in situ oligonucleotide, MOLMIBI_CH34_array,
11	GPL16060	Agilent-036031 Schizosaccharomyces pombe sp10b [ProbeName version]	967,070	Biochemie Zentrum Heidelebrg	2012-09-13	Agilent Technologies	Schizosaccharomyces pombe	Oligo Array	in situ oligonucleotide, Agilent-036031 Schizosaccharomyces pombe sp10b [ProbeName version], S.p. 10 bp res Arrays of this design have barcodes that begin with 16036031 or 2536031.
12	GPL16059	Agilent-036227 Schizosaccharomyces pombe sp40c [ProbeName version]	176,037	Biochemie Zentrum Heidelebrg	2012-09-13	Agilent Technologies	Schizosaccharomyces pombe	Oligo Array	in situ oligonucleotide, Agilent-036227 Schizosaccharomyces pombe sp40c [ProbeName version], Tm optimized 75C Arrays of this design have barcodes that begin with 16036227 or 2536227.
13	GPL16058	Agilent-031109 Schizosaccharomyces pombe sp40a 029798 [ProbeName version]	174,569	Biochemie Zentrum Heidelebrg	2012-09-13	Agilent Technologies	Schizosaccharomyces pombe	Oligo Array	in situ oligonucleotide, Agilent-031109 Schizosaccharomyces pombe sp40a 029798 [ProbeName version], Arrays of this design have barcodes that begin with 16031109 or 2531109.
14	GPL16007	Agilent-018261 Coupland Lab (MPIPZ)-Arabidopsis/Arabis-244K	29,936	Max Planck Institute	2012-08-29	ImaGenes GmbH (Berlin, De)	Arabidopsis thaliana	Oligo Array	in situ oligonucleotide, Agilent-018261 Coupland Lab (MPIPZ)-Arabidopsis/Arabis-244K, Custom Arabidopsis array for heterologuos hybridization studies.
15	GPL15979	miRXplore TM Microarray (878)	1,471	Miltenyi Biotec GmbH	2012-08-23	Miltenyi Biotec GmbH, Cologne, Germany	Homo sapiens,Mus musculus,Rattus norvegicus	Oligo Array	spotted oligonucleotide, miRXplore TM Microarray (878), The miRXplore TM Microarray is composed of 5884 DNA oligonucleotides with a sequence being reverse complement to the respective mature miRNA or control RNA, representing a total of 1374 miRNA sequences and 97 controls with all probes spotted in quadruplicates. The 1374 miRNA sequences covered sequence verified miRNAs of the species human (859) mouse (622) and rat (428) as well as viral miRNAs (129) as deposited in the miRBase sequence database version 12.0. The 97 positive and negative control probes were chosen as follows. Three sets of controls, miRControl 1 (four sequences used to assess efficiency and sensitivity of labelling), miRControl 2 (single sequence used to assess efficiency of small RNA enrichment) and miRControl 3 (43 sequences used to normalize signal intensities across different samples and arrays) were artificial sequences chosen not be present in any of the human, mouse, rat or viral genome. A fourth set of positive controls presented 36 positive small but non-miRNA sequences including probes e.g. for 5.1 sRNA, tRNAs, and U6 RNAs. A fifth set of oligonucleotides included 13 negative controls like different single or double mismatch, antisense, or scrambled miRNA sequences. Microarrays were manufactured by Miltenyi Biotec.
16	GPL15865	Agilent-022326 Custom Danio rerio transcription factor array [ITG_TF_rerio]	45,220	Karlsruhe Institute of Technology	2012-07-30	Agilent Technologies	Danio rerio	Oligo Array	in situ oligonucleotide, Agilent-022326 Custom Danio rerio transcription factor array [ITG_TF_rerio], Transcription factor array Arrays of this design have barcodes that begin with 16022326 or 2522326. Orientation: Features are numbered numbered Left-to-Right, Top-to-Bottom as scanned by an Agilent scanner (barcode on the left, DNA on the back surface, scanned through the glass), matching the FeatureNum output from Agilent's Feature Extraction software. The ID column represents the Agilent Feature Extraction feature number. Rows and columns are numbered as scanned by an Axon Scanner (barcode on the bottom, DNA on the front surface). To match data scanned on an Axon scanner, use the RefNumber column contained in the Agilent-provided GAL file as the ID_REF column in sample submissions.
17	GPL15859	Candida albicans Custom Microarray Agilent [Agilent-028105]	15,744	Helmholtz-Centre for Infection Research	2012-07-29	Agilent	Candida albicans	Oligo Array	in situ oligonucleotide, Candida albicans Custom Microarray Agilent [Agilent-028105],
18	GPL15741	FZ_IBG-1_Goxydans_10K_Ver1 array	8,640	Forschungszentrum JÃƒÂ¼lich GmbH	2012-06-26	Operon (Cologne, Germany) and Microarrays Inc. (Huntsville, USA)	Gluconobacter oxydans 621H	Oligo Array	spotted oligonucleotide, FZ_IBG-1_Goxydans_10K_Ver1 array, spotted with 70-mer oligonucleotides obtained from Operon (Cologne, Germany) G.oxydans 621H, based on the genome sequence entry NC_006677
19	GPL15644	miRXplore Microarray (909)	1,557	Miltenyi Biotec GmbH	2012-06-02	Miltenyi Biotec GmbH, Bergisch Gladbach, Germany	Homo sapiens,Mus musculus,Rattus norvegicus	Oligo Array	spotted oligonucleotide, miRXplore Microarray (909), The miRXplore TM Microarray is composed of 6228 DNA oligonucleotides with a sequence being reverse complement to the respective mature miRNA or control RNA, representing a total of 1460 miRNA sequences and 97 controls with all probes spotted in quadruplicates. The 1460 miRNA sequences covered sequence verified miRNAs of the species human (878) mouse (682) and rat (427) as well as viral miRNAs (141) as deposited in the miRBase sequence database version 13.0. The 97 positive and negative control probes were chosen as follows. Three sets of controls, miRControl 1 (four sequences used to assess efficiency and sensitivity of labelling), miRControl 2 (single sequence used to assess efficiency of small RNA enrichment) and miRControl 3 (18 sequences used to normalize signal intensities across different samples and arrays) were artificial sequences chosen not be present in any of the human, mouse, rat or viral genome. A fourth set of positive controls presented 36 positive small but non-miRNA sequences including probes e.g. for 5.1 sRNA, tRNAs, and U6 RNAs. A fifth set of oligonucleotides included 13 negative controls like different single or double mismatch, antisense, or scrambled miRNA sequences.
20	GPL15457	Klug lab - Rhodobacter sphaeroides - 15k array Version 2 (144 sRNA)	15,208	Justus-Liebig University GieÃƒÅ¸en	2012-04-18	Agilent technologies	Rhodobacter sphaeroides 2.4.1	Oligo Array	spotted oligonucleotide, Klug lab - Rhodobacter sphaeroides - 15k array Version 2 (144 sRNA),

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