Gene Expression Omnibus (GEO) Overview Version：2013-06-15Japanese page
An overview of the GEO entries broken down by the measurement platforms and the features of the measured samples.
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Data Unit : [ DataSet / Sample / Platform ] Show explanation>> <<Hide explanation
DataSet : Series(GSE) x Platform(GPL). A set of related gene expression data.
Sample : Biological materials.
platform : Methods or instruments used for the gene expression profilings.
The numbers shown in the tabs are the numbers of the data (series, samples or platforms) belonging to the groups.
  Human
(74)		   Primates
(0)		   Rodents
(36)		   Mammals
(9)		   Vertebrates
(11)		   Invertebrates
(39)		   Plants
(54)		   Bacteria
(33)		   Viruses
(1)		   Phages
(0)		   Unclassified
(1)		   All
(258)		  
  SAGE NlaIII
(1)		   SAGE RsaI
(0)		   SAGE Sau3A
(0)		   MPSS
(3)		   GeneChip
(17)		   Tiling Array
(29)		   cDNA Array
(125)		   Oligo Array
(78)		   Bead Array
(1)		   Protein Array
(0)		   Antibody
(0)		   RT-PCR
(0)		   HT-Seq
(1)		   Other
(3)		   All
(258)		  
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Platform ID Title Number of the probes Institute Submission date Manufacturer Species Platform class Reasoning of the classification
Keywords used for the classification are shown with bold font.
1 GPL3964 SAMF Human 14k Part2 14,592 University of Calgary 2006-06-30 Southern Alberta Microarray Facility Homo sapiens
Homo sapiens		 Oligo Array spotted oligonucleotide, SAMF Human 14k Part2, The array contains 32 subgrids arranged in 4 columns x 8 rows. Each subgrid has 19 rows and 24 columns. Grid to grid distance is 4500 um. Average spot diameter is 100um. Spot to spot distance is 180 um.
2 GPL3965 SAMF Mouse 7k 14,592 University of Calgary 2006-06-30 Southern Alberta Microarray Facility Mus musculus
Mus musculus		 Oligo Array spotted oligonucleotide, SAMF Mouse 7k, The array contains 32 subgrids arranged in 4 columns x 8 rows. Each subgrid has 19 rows and 24 columns. Grid to grid distance is 4500 um. Average spot diameter is 100um. Spot to spot distance is 180 um.
3 GPL3963 SAMF Human 14k Part1 13,824 University of Calgary 2006-06-30 Southern Alberta Microarray Facility Homo sapiens
Homo sapiens		 Oligo Array spotted oligonucleotide, SAMF Human 14k Part1, The array contains 32 subgrids arranged in 4 columns x 8 rows. Each subgrid has 18 rows and 24 columns. Grid to grid distance is 4500 um. Average spot diameter is 100um. Spot to spot distance is 180 um.
4 GPL3955 Anopheles gambiae high density oligonucleotide microarray 195,213 Yale University 2006-06-29 NASA Ames Center Anopheles gambiae
Anopheles gambiae		 Oligo Array in situ oligonucleotide, Anopheles gambiae high density oligonucleotide microarray,
5 GPL3936 Carnegie Xenopus laevis 22k Micorarray v2 22,575 National Institutes of Health/National Institute of Child Health and Human Development 2006-06-28 Agilent Technologies Xenopus laevis
Xenopus laevis		 Oligo Array in situ oligonucleotide, Carnegie Xenopus laevis 22k Micorarray v2,
6 GPL3931 Staphylococcus_aureus_v4_GRL 8,455 Genomic Research Laboratory 2006-06-28 Agilent Staphylococcus aureus
Staphylococcus aureus		 Oligo Array in situ oligonucleotide, Staphylococcus_aureus_v4_GRL, 60-mers oligonucleotide probes, in-situ synthesis on 1
7 GPL3935 Escherichia coli O157:H7 virulence and regulatory array 612 MBRI 2006-06-28 custom Escherichia coli O157:H7 str. EDL933
Escherichia coli O157:H7 str. EDL933		 Oligo Array spotted oligonucleotide, Escherichia coli O157:H7 virulence and regulatory array, epoxide coated
8 GPL3930 Nimblegen human 5K promoter array 2 364,132 OSU Medical Center 2006-06-27 Nimblegen Systems Inc. Homo sapiens
Homo sapiens		 Oligo Array in situ oligonucleotide, Nimblegen human 5K promoter array 2,
9 GPL3927 Dichelobacter nodosus oligonucleotide microarray-altered spot pattern,power outage 7,488 Monash University 2006-06-27 Micromon Dichelobacter nodosus
Dichelobacter nodosus		 Oligo Array spotted oligonucleotide, Dichelobacter nodosus oligonucleotide microarray-altered spot pattern,power outage, Microarrays consisted of 2,317 custom 70-mer oligonucleotides (designed to reduce cross-hybridisation) spotted in triplicate on Ultra-GAPS slides (Corning) using a QArray Mini (Genetix) arrayer, representing 1,343 ORFs as determined from the unpublished D. nodosus genome sequence (http://www.tigr.org) and where possible two gene probes per ORF were synthesised. Oligonucleotides were spotted on a 2X6 metagrid, which was composed of 24X26 subgrids.
10 GPL3924 Mouse 23K oligo microarray_CD133-Prominin Study 21,738 Texas A&M U HSC 2006-06-26 University of Colorado, Gene Expression Core Laboratory, Dr Brian Soriano Mus musculus
Mus musculus		 Oligo Array spotted oligonucleotide, Mouse 23K oligo microarray_CD133-Prominin Study, Custom-printed 23,000 feature mouse-oligonucleotide arrays, (provided by Dr. Brian Soriano, University of Colorado, Department of Pharmacology, Gene Expression Core Laboratory)
11 GPL3922 Candida glabrata whole genome oligonucleotide array (70 mers) 13,056 Johns Hopkins Univ. School of Medicine 2006-06-26 Biotechnology Research Instit (Montreal)/NRC-Canada & Johns Hopkins Univ. Candida glabrata
Candida glabrata		 Oligo Array spotted oligonucleotide, Candida glabrata whole genome oligonucleotide array (70 mers), UltraGAPs glass slides from Corning
12 GPL3919 NGEL Mouse 22K Oligo Microarray 21,597 Texas A&M U HSC 2006-06-25 NGEL Mus musculus
Mus musculus		 Oligo Array spotted oligonucleotide, NGEL Mouse 22K Oligo Microarray, Oligos designed by Compugen/Sigma-Genosys
13 GPL3918 MERH03-S1-0002 (Rhodococcus sp. RHA1 22K) 22,080 University of British Columbia 2006-06-23 The Microarray Facility of the Prostate Centre at Vancouver General Hospital Rhodococcus jostii RHA1
Rhodococcus jostii RHA1		 Oligo Array spotted oligonucleotide, MERH03-S1-0002 (Rhodococcus sp. RHA1 22K),
14 GPL3884 Whole Genome, Alternative Splicing Drosophila Chip v2 22,575 University of Florida 2006-06-19 Agilent Technologies Drosophila melanogaster
Drosophila melanogaster		 Oligo Array spotted oligonucleotide, Whole Genome, Alternative Splicing Drosophila Chip v2,
15 GPL3885 JCVI PFGRC Yersinia pestis 30K v2 array designed primarily based on strain CO92 5,329 J. Craig Venter Institute 2006-06-19 JCVI PFGRC Yersinia pestis
Yersinia pestis		 Oligo Array spotted oligonucleotide, JCVI PFGRC Yersinia pestis 30K v2 array designed primarily based on strain CO92, This set includes 4826 oligonucleotides, has 30000 spots distributed in 48 blocks.
16 GPL3880 DGRC-D. melanogaster-DGRC2-17328-v1 17,328 Drosophila Genomics Resource Center (DGRC) 2006-06-15 Drosophila Genomics Resource Center (DGRC) Drosophila melanogaster
Drosophila melanogaster		 Oligo Array spotted oligonucleotide, DGRC-D. melanogaster-DGRC2-17328-v1, DGRC-2 transcriptome microarrays are spotted with gene-specific Drosophila melanogaster 70 N long oligonucleotides. The oligos were designed against release 4.1 of the genome annotation using a custom implementation of OligoArray2. Oligos selected have minimal sequence similarity to other genes, size range between 65-69 nucleotides with a minimal Tm window, and locations biased towards the 3'-ends of transcripts. Oligo Synthesis was completed by Illumina. The array also contains the following controls: a ubiquitously expressed gene (actin 5C), a spotting buffer-only control (150 mM NaPO4, pH 8.5), exogenous (non-Drosophila) probes: 9 from Arabidopsis, 2 from soybean, 1 from apple and Ambion’s Array Control Sense Oligo Spots bacterial sequences that can be utilized with spiking RNAs, four exogenous markers - GAL4, lacZ, modified GFP, and FLPase, and a 70mer probe degradation long oligonucleotide set. DGRC-2 arrays are printed using an Omnigrid 300 contact-printing instrument and 48 silicon split-pins on Corning UltraGAPS slides.
17 GPL3879 miRNA expression in Human Uterine Leiomyomata 720 Public Health Research Institute 2006-06-15 CAG, PHRI Homo sapiens
Homo sapiens		 Oligo Array spotted oligonucleotide, miRNA expression in Human Uterine Leiomyomata,
18 GPL3876 UCSF Mus musculus 39K 15Mm MEEBO Oligo Array 38,976 University of California, San Francisco 2006-06-14 UCSF Shared Microarray Facility Mus musculus
Mus musculus		 Oligo Array spotted oligonucleotide, UCSF Mus musculus 39K 15Mm MEEBO Oligo Array, Arrays were printed on aminosilane coated slides (Schott Nexterion, Elmford, NY)
19 GPL3877 PRHU05-S1-0006 (PC Human Operon v2 21k) 23,232 University of British Columbia 2006-06-14 Microarray Facility - the Prostate Centre at Vancouver General Hospital Homo sapiens
Homo sapiens		 Oligo Array spotted oligonucleotide, PRHU05-S1-0006 (PC Human Operon v2 21k) ,
20 GPL3872 Nimblegen Human custom array 195,713 Fraunhofer Institut 2006-06-13 Nimblegen Homo sapiens
Homo sapiens		 Oligo Array in situ oligonucleotide, Nimblegen Human custom array,
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