| 1 |
GPL14913 |
Agilent-025271 Zea mays Mais_array_v1 [Probe Name version] |
41,838 |
Heinrich Heine University Duesseldorf |
2011-11-22 |
Agilent Technologies |
Zea mays
 |
Oligo Array |
in situ oligonucleotide, Agilent-025271 Zea mays Mais_array_v1 [Probe Name version], Mais array, v1, basierend auf Design 08/2009 Arrays of this design have barcodes that begin with 16025271 or 2525271. Orientation: Features are numbered numbered Left-to-Right, Top-to-Bottom as scanned by an Agilent scanner (barcode on the left, DNA on the back surface, scanned through the glass), matching the FeatureNum output from Agilent's Feature Extraction software. The ID column represents the Agilent Feature Extraction feature number. Rows and columns are numbered as scanned by an Axon Scanner (barcode on the bottom, DNA on the front surface). To match data scanned on an Axon scanner, use the RefNumber column contained in the Agilent-provided GAL file as the ID_REF column in sample submissions. |
| 2 |
GPL15095 |
Agilent-020412 Yersinia pseudotuberculosis YPIII gene expression array |
15,744 |
Helmholtz Centre for Infection Research |
2012-01-06 |
Agilent Technologies |
Yersinia pseudotuberculosis
 |
Oligo Array |
in situ oligonucleotide, Agilent-020412 Yersinia pseudotuberculosis YPIII gene expression array, Sequences used for the design of the microarray (Agilent, 8 x 15K format) include three different 60-nt oligonucleotides for all 4172 chromosomal genes (ORFs > 30 codons) of the Y. pseudotuberculosis YPIII genome and six probes for the 92 genes of the virulence plasmid pYV of Y. pseudotuberculosis strain IP32953, and were obtained from the NCBI Genome GenBank (NC_010465.1 and NC_006153). The ORF-specific oligonucleotides were designed using the webdesign application eArray from Agilent (http://www.genomics.agilent.com). |
| 3 |
GPL13456 |
Agilent-025731 Ustilago_v1 |
13,626 |
Friedrich-Alexander-University Erlangen-Nuremberg |
2011-04-28 |
Agilent Technologies |
Ustilago maydis
 |
Oligo Array |
in situ oligonucleotide, Agilent-025731 Ustilago_v1, |
| 4 |
GPL13771 |
Catabolic microarray Version 2.1 |
7,488 |
HCI - Helmholtz Centre for Infection Research |
2011-06-27 |
HZI microarray facility |
unidentified microorganism
 |
Oligo Array |
spotted oligonucleotide, Catabolic microarray Version 2.1, |
| 5 |
GPL10294 |
Ruhr-Universität Bochum/NimbleGen A_tumefaciens_C58_4x72K array |
5,344 |
Ruhr-Universität Bochum |
2010-04-06 |
NimbleGen |
unidentified
 |
Oligo Array |
in situ oligonucleotide, Ruhr-Universität Bochum/NimbleGen A_tumefaciens_C58_4x72K array, NimbleGen design name 080630_A_tumefaciens_C58_expr; NimbleGen design ID 7811; The 4-plex NimbleGen Gene Expression Array for A. tumefaciens represents 5344 genes and is based on NCBI reference sequences NC_003062, NC_003063, NC_003064 and NC_003065. Each gene is represented by 6 probes (45mer-60mer oligonucleotides), each in two copies on different locations on the array. |
| 6 |
GPL10453 |
NimbleGen Thermoplasma acidophilum DSM 1728 7K expression array |
7,410 |
Max Planck Institute of Biochemistry |
2010-05-21 |
NimbleGen |
Thermoplasma acidophilum DSM 1728
 |
Oligo Array |
in situ oligonucleotide, NimbleGen Thermoplasma acidophilum DSM 1728 7K expression array, NimbleGen design ID: 4453 NimbleGen design name: TI273075 60mer Probes were selected for all protein sequences (1482). The median number of probes per sequence is 20, and each probe is replicated 5 times on the chip. The probes are randomly distributed over the surface of the array. Unused features are filled with randomly generated probes of comparable GC content. The Platform data table reflects a condensed representation of the expression array's replicate (SEQ_ID) features. Probe sequences available in the ndf file. NimbleGen array description files are linked below as supplementary files: 2006-07-27_TI273075_60mer.ndf 2006-07-27_TI273075_60mer.ngd GenBank accession number of T. acidophilum DSM 1728 genome: NC_002578.1 |
| 7 |
GPL8071 |
Agilent-021784 Synechocystis_predictions_tiling_28nt_105K |
104,104 |
University of Freiburg |
2009-01-13 |
Agilent Technologies |
Synechocystis sp. PCC 6803
 |
Oligo Array |
in situ oligonucleotide, Agilent-021784 Synechocystis_predictions_tiling_28nt_105K, |
| 8 |
GPL8567 |
Agilent-021974 Syn_PCC6803_transcriptome |
45,220 |
University of Freiburg |
2009-05-19 |
Agilent Technologies |
Synechocystis sp. PCC 6803
|
Oligo Array |
in situ oligonucleotide, Agilent-021974 Syn_PCC6803_transcriptome, |
| 9 |
GPL6546 |
Agilent-016989 |
15,744 |
Max-Planck-Institute for Infection Biology |
2008-03-04 |
Agilent Technologies |
Synechocystis sp. PCC 6803
|
Oligo Array |
in situ oligonucleotide, Agilent-016989, |
| 10 |
GPL9724 |
Febit Homo Sapiens and Sus Scrofa 1.1K miRBase 13.0 |
1,101 |
Freie Universitaet Berlin |
2009-11-30 |
febit |
Sus scrofa
 |
Oligo Array |
in situ oligonucleotide, Febit Homo Sapiens and Sus Scrofa 1.1K miRBase 13.0, Based on Sanger miRBase Release 13.0 and deep sequencing data. |
| 11 |
GPL9979 |
Febit Sus Scrofa miRNA Custom 0.8K |
798 |
Freie Universitaet Berlin |
2010-01-26 |
febit |
Sus scrofa
|
Oligo Array |
in situ oligonucleotide, Febit Sus Scrofa miRNA Custom 0.8K, Based on miRDeep predicted porcine miRNAs. |
| 12 |
GPL15399 |
NimbleGen Streptococcus sanguinis SK36 080319_BK_mixed_bact_expr [DesignID: 7345] |
2,270 |
hospital university rostock |
2012-04-03 |
NimbleGen |
Streptococcus sanguinis SK36
 |
Oligo Array |
in situ oligonucleotide, NimbleGen Streptococcus sanguinis SK36 080319_BK_mixed_bact_expr [DesignID: 7345], 385K-format:3 replicates of up to 13 probes per gene, 60 mer oligonucleotides, 3510 randomized sequence probes The array includes probes for Porphyromonas gingivalis W83, Fusobacterium nucleatum DSMZ 25586, Streptococcus sanguinis SK36, Actinobacillus actinomycetemcomitans HK1651, and Streptococcus mutans UA159. The probes for all of these organisms are represented in the supplemental files '080319_BK_mixed_bact_expr.ndf' and '080319_BK_mixed_bact_expr.ngd'. However, the Platform table includes probes only for Streptococcus sanguinis SK36. DesignID: 7345 native array description file: 080319_BK_mixed_bact_expr.ndf native array description file: 080319_BK_mixed_bact_expr.ngd |
| 13 |
GPL14116 |
Febit_IMIKRO_Streptococcus_pyogenes_16K_v1 |
18,006 |
University of Rostock |
2011-08-05 |
Febit biomed GmbH Company (Heidelberg, Germany) |
Streptococcus pyogenes NZ131
 |
Oligo Array |
in situ oligonucleotide, Febit_IMIKRO_Streptococcus_pyogenes_16K_v1, |
| 14 |
GPL13796 |
Agilent-025553 Spym49N131_01 Custom Array GE 8x15K (Feature Number version) |
15,744 |
University of Rostock |
2011-07-01 |
Agilent Technologies |
Streptococcus pyogenes NZ131
|
Oligo Array |
in situ oligonucleotide, Agilent-025553 Spym49N131_01 Custom Array GE 8x15K (Feature Number version), Custom Array GE 8x15K; Agilent [025553_D_GEO_20090929.txt] Arrays of this design have barcodes that begin with 16025553 or 2525553. Orientation: Features are numbered numbered Left-to-Right, Top-to-Bottom as scanned by an Agilent scanner (barcode on the left, DNA on the back surface, scanned through the glass), matching the FeatureNum output from Agilent's Feature Extraction software. The ID column represents the Agilent Feature Extraction feature number. Rows and columns are numbered as scanned by an Axon Scanner (barcode on the bottom, DNA on the front surface). To match data scanned on an Axon scanner, use the RefNumber column contained in the Agilent-provided GAL file as the ID_REF column in sample submissions. |
| 15 |
GPL13816 |
Agilent-025553 Spym49N131_01 Custom Array GE 8x15K (Probe Name version) |
9,397 |
University of Rostock |
2011-07-03 |
Agilent Technologies |
Streptococcus pyogenes NZ131
|
Oligo Array |
in situ oligonucleotide, Agilent-025553 Spym49N131_01 Custom Array GE 8x15K (Probe Name version), Custom Array GE 8x15K; Agilent [025553_D_GEO_20090929.txt] |
| 16 |
GPL10873 |
NimbleGen Porphyromonas gingivalis Streptococcus mutans 080319_BK_mixed_bact_expr |
3,802 |
hospital university rostock |
2010-09-01 |
NimbleGen |
Streptococcus mutans UA159,Porphyromonas gingivalis W83
 |
Oligo Array |
in situ oligonucleotide, NimbleGen Porphyromonas gingivalis Streptococcus mutans 080319_BK_mixed_bact_expr, 385K-format: 3 replicates of up to 13 probes per gene, 60-mer oligonucleotides, 3510 randomized sequence probes. The array includes probes for Porphyromonas gingivalis W83, Fusobacterium nucleatum DSMZ 25586, Streptococcus sanguinis SK36, Actinobacillus actinomycetemcomitans HK1651, and Streptococcus mutans UA159. The probes for all of these organisms are represented in the supplemental files 'GPL10873_080319_BK_mixed_bact_expr.ndf' and 'GPL10873_080319_BK_mixed_bact_expr.ngd'. However, the Platform table includes probes only for Porphyromonas gingivalis W83 and Streptococcus mutans. |
| 17 |
GPL10540 |
Agilent-023956 S. mutans UA159-140509 |
15,744 |
Helmholtz Center for Infection Research |
2010-06-14 |
Agilent Technologies |
Streptococcus mutans UA159
 |
Oligo Array |
in situ oligonucleotide, Agilent-023956 S. mutans UA159-140509, |
| 18 |
GPL4031 |
Helmholtz Centre Streptococcus mutans UA159 6k array (uncondensed) |
6,080 |
HCI - Helmholtz Centre for Infection Research |
2006-07-24 |
Helmholtz Centre for Infection Research, Array Facility |
Streptococcus mutans UA159
|
Oligo Array |
spotted oligonucleotide, Helmholtz Centre Streptococcus mutans UA159 6k array (uncondensed), A condensed version of this array is represented in Platform GPL9332. |
| 19 |
GPL11308 |
BaSysBio Staphylococcus aureus T1 385K array |
2,892 |
Greifswald University |
2010-12-10 |
NimbleGen |
Staphylococcus aureus subsp. aureus NCTC 8325
 |
Oligo Array |
in situ oligonucleotide, BaSysBio Staphylococcus aureus T1 385K array, CP000253.1 |
| 20 |
GPL13295 |
Agilent-028485 Myk-Array v3b |
11,262 |
University of Bayreuth |
2011-03-17 |
Agilent Technologies |
soil metagenome
 |
Oligo Array |
in situ oligonucleotide, Agilent-028485 Myk-Array v3b, Agilent-028485 Myk-Array v3b 028483 Design ID: 028485 FuncPhyloArray v3b A custom-made EcoChip microarray consisting of about 9000 probes targeting expressed fungals genes and about 5000 probes targeting the precursor-rRNA of different fungal lineages. Source organisms of the array features are mainly soil fungi and plants. |