Gene Expression Omnibus (GEO) Overview Version´╝Ü2014-04-12Japanese page
An overview of the GEO entries broken down by the measurement platforms and the features of the measured samples.
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Data unit : [ DataSet / Sample / Platform ] Show explanation>> <<Hide explanation
DataSet : Series(GSE) x Platform(GPL). A set of related gene expression data.
Sample : Biological materials.
platform : Methods or instruments used for the gene expression profilings.
The numbers shown in the tabs are the numbers of the data (series, samples or platforms) belonging to the groups.
  Human
(279)
  Primates
(0)
  Rodents
(126)
  Mammals
(16)
  Vertebrates
(9)
  Invertebrates
(19)
  Plants
(87)
  Bacteria
(50)
  Viruses
(0)
  Phages
(0)
  Unclassified
(6)
  All
(592)
 
  SAGE NlaIII
(2)
  SAGE RsaI
(0)
  SAGE Sau3A
(0)
  MPSS
(2)
  GeneChip
(132)
  Tiling Array
(12)
  cDNA Array
(37)
  Oligo Array
(220)
  Bead Array
(113)
  Protein Array
(0)
  Antibody
(0)
  RT-PCR
(0)
  HT-Seq
(74)
  Other
(0)
  All
(592)
 
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Title Platform Institute Submission date Species Data size
(probes x samples)
Sample NCBI
FTP
site
Animal Plant  
brain blood connective reproductive muscular digestive liver lung urinary endo/exo-crine embryo adult aerial structure young aerial structure root meristem/growing tissue flower/sexual organ seed/fruit/grain pooled unclassified
1 ZHBTc4 ES cells stably expressing EGFP vs Nr5a2-EGFP or Oct4-EGFP vs Nr5a2-EGFP (GSE52034) [Oligo Array] Agilent-026655 Whole Mouse Genome Microarray 4x44K v2 (Probe Name version) (GPL11202) Sogang 2013-11-04 Mus musculus
Mus musculus
78,972
(39,486 x 2)
2 by_platform
by_series
2 Wild-type versus HBx-transfected mive (GSE12723) [Oligo Array] SNU/Agilent Whole Mouse Genome Array (GenePix version) (GPL7279) Seoul National University 2008-09-10 Mus musculus
Mus musculus
398,610
(44,290 x 9)
9 by_platform
by_series
3 Wild type E.coli SE15 vs. LuxS mutant E.coli SE15 (GSE49474) [Oligo Array] Escherichia coli SE15 30K Microarray (GPL17523) Kyonggi University 2013-08-01 Escherichia coli SE15
Escherichia coli SE15
4,332
(4,332 x 1)
1 by_platform
by_series
4 Vibrio vulnificus: Wild-type vs. smcR mutant (V. vulnificus quorum sensing master regulator) (GSE32212) [Oligo Array] Vibrio vulnificus whole genome TwinChip (GPL14588) Seoul National University 2011-09-19 Vibrio vulnificus
Vibrio vulnificus
24,138
(4,023 x 6)
6 by_platform
by_series
5 Vibrio vulnificus: Wild type vs. iscR mutant (V. vulnificus iron-sulfur cluster regulator) (GSE44679) [Oligo Array] Vibrio vulnificus whole genome TwinChip (GPL16723) Seoul National University 2013-02-26 Vibrio vulnificus MO6-24/O
Vibrio vulnificus MO6-24/O
21,012
(3,502 x 6)
6 by_platform
by_series
6 Vibrio vulnificus: normal intracellular c-di-GMP level vs. high intracellular c-di-GMP level (GSE51459) [Oligo Array] Vibrio vulnificus CMCP6 whole genome TwinChip (GPL17798) Seoul National University 2013-10-21 Vibrio vulnificus CMCP6
Vibrio vulnificus CMCP6
26,352
(4,392 x 6)
6 by_platform
by_series
7 Vibrio vulnificus Wild-type vs. smcR mutant biofilm cells (V. vulnificus quorum sensing master regulator) (GSE32270) [Oligo Array] Vibrio vulnificus MO6-24/O whole genome TwinChip (GPL14598) Seoul National University 2011-09-21 Vibrio vulnificus
Vibrio vulnificus
13,632
(4,544 x 3)
3 by_platform
by_series
8 Various genetic interactions of GIGANTEA and EARLY FLOWERING 4 by a functional dominance during a day in Arabidopsis (GSE32938) [Oligo Array] POSTECH Arabidopsis thaliana 8x60K v1.0 (GPL14727) Pohang University of Science and Technology 2011-10-12 Arabidopsis thaliana
Arabidopsis thaliana
1,511,424
(62,976 x 24)
24 by_platform
by_series
9 Variant acute promyelocytic leukemia (APL) bone marrow aCGH (GSE42984) [Oligo Array] Agilent-022060 SurePrint G3 Human CGH Microarray 4x180K (Feature Number version) (GPL10123) Asan Medical Center 2012-12-18 Homo sapiens
Homo sapiens
180,880
(180,880 x 1)
1 by_platform
by_series
10 Understanding cross-communication between aboveground and below ground plant via transcriptome analysis of a sucking insect whitefly-infested pepper plants (GSE52661) [Oligo Array] Capsicum annuum 300k Microarray v2.0 (GPL17972) GreenGene Biotech Inc. 2013-11-22 Capsicum annuum
Capsicum annuum
277,992
(34,749 x 8)
4 4 by_platform
by_series
11 Udt1-1 anther and Wild type_anther (GSE2619) [Oligo Array] Rice Genome Oligo Set V1.0 (GPL1829) Genomics and Genetics Institute, GreenGene Biotech 2005-05-04 Oryza sativa
Oryza sativa
667,997
(60,727 x 11)
3 8 by_platform
by_series
12 Transcriptomic analysis of differential genetic expression under CosR-knockdown condition compared with wild-type (GSE40201) [Oligo Array] Campylobacter jejuni subsp. jejuni NCTC 11168 15K Microarrays (GPL15955) Seoul National University 2012-08-17 Campylobacter jejuni
Campylobacter jejuni
13,176
(4,392 x 3)
3 by_platform
by_series
13 Transcriptome changes following castration of Korean cattle bulls in longissimus dorsi muscle (GSE35085) [Oligo Array] Customized CombiMatrix Eukaryotic 12K (GPL15126) chonnam university 2012-01-13 Bos taurus
Bos taurus
112,896
(12,544 x 9)
9 by_platform
by_series
14 Transcriptome analysis of Escherichia coli C strains (wt and PKH5000, a butanol-tolerant mutant) after 1-butanol treatment (GSE47589) [Oligo Array] MGAC_Ecoli_v1.0 (GPL7395) KRIBB 2013-06-03 Escherichia coli
Escherichia coli
84,978
(4,721 x 18)
18 by_platform
by_series
15 Transcriptome analysis in Human leprosy patients (GSE24280) [Oligo Array] NimbleGen Homo sapiens HG18 090828 opt expr HX12 (12x135k) (GPL10191) Medical College of the Catholic University 2010-09-22 Homo sapiens
Homo sapiens
1,125,825
(45,033 x 25)
24 1 by_platform
by_series
16 Transcriptional regulation of Sox17 in HUVEC (GSE37395) [Oligo Array] Agilent-026652 Whole Human Genome Microarray 4x44K v2 (Feature Number version) (GPL10332) Korea Advanced Institute of Science and Technology 2012-04-18 Homo sapiens
Homo sapiens
135,660
(45,220 x 3)
3 by_platform
by_series
17 Transciptome analysis of Salmonella enterica serovar Typhimurium UK1 delta-raoN at oxidative stress (GSE37626) [Oligo Array] Nimblegen Salmonella Typhimurium LT2 4.5K [081014_Styp_LT2_EXP] (GPL15054) Korea University 2012-04-27 unidentified
unidentified
18,016
(4,504 x 4)
4 by_platform
by_series
18 Toc1, Toc2, and Skn7 null mutants treated with Flucytosine (GSE30154) [Oligo Array] Duke Cryptococcus neoformans serotype D (JEC21) 8K (GPL8638) Yonsei University 2011-06-22 Cryptococcus neoformans var. grubii H99
Cryptococcus neoformans var. grubii H99
202,752
(8,448 x 24)
24 by_platform
by_series
19 To identify gene markers which differentiate between AERD and ATA with a high discriminative power. (GSE45847) [Oligo Array] GeneTrack Human 35K oligonucleotide microarray (GPL16979) Soon Chun Hyang University hospital 2013-04-08 Homo sapiens
Homo sapiens
632,058
(15,049 x 42)
42 by_platform
by_series
20 Time course of Saccharomyces cerevisiae Exposed to Arsenic under Phosphate Limited Conditions (GSE14991) [Oligo Array] Agilent-011447 Yeast Oligo Microarray G4140A (Feature Number version) (GPL884) Korea University 2009-02-25 Saccharomyces cerevisiae
Saccharomyces cerevisiae
64,842
(10,807 x 6)
6 by_platform
by_series
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