Gene Expression Omnibus (GEO) Overview

DataSet	:	Series(GSE) x Platform(GPL). A set of related gene expression data.
Sample	:	Biological materials.
platform	:	Methods or instruments used for the gene expression profilings.

All
(931,947)

SAGE NlaIII
(1,683)

SAGE RsaI
(3)

SAGE Sau3A
(54)

MPSS
(439)

GeneChip
(391,468)

Tiling Array
(22,222)

cDNA Array
(104,397)

Oligo Array
(247,270)

endo/exo-crine
(13,013)

embryo
(3,780)

adult aerial structure
(4,222)

young aerial structure
(1,084)

root
(1,104)

meristem/growing tissue
(467)

flower/sexual organ
(1,046)

seed/fruit/grain
(824)

pooled
(15,767)

unclassified
(93,860)

all
(247,270)

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	Sample ID	Title	Number of Data	Institute	Submission date	Platform	Sample type	Species	Organ class	Reasoning of the classification Keywords used for the classification are shown with bold font.
1	GSM265444	129X1/SvJ	3,076,954	Children's Hospital, Boston	2008-02-12	[Oligo Array] NimbleGen Mouse 3.1M NCBI36 (GPL6363)	genomic	Mus musculus	unclassified	source_name:C57BL/6J 129X1/SvJ title:129X1/SvJ description:replicate
2	GSM471434	KB1 vs ABC8 (NA18507) on HD2	2,175,072	University of Washington	2009-11-16	[Oligo Array] Eichler-NimbleGen Human 2.1 HD2 CGH chip (GPL9684)	genomic	Homo sapiens	unclassified	source_name:KB1 NA18507 title:KB1 vs ABC8 (NA18507) on HD2 description:The results of this array-CGH experiment were used to conform predicted copy number differences between samples KB1 and NA18507. This was a genome-wide array.
3	GSM498161	Human-tumor	2,175,072	University of Georgia	2010-01-19	[Oligo Array] NimbleGen Human 2.1M array [HG18_CGH_LISOv1_HX1] (GPL9944)	genomic	Homo sapiens	colon	DNA from colon tumor tissue of human 2551 DNA from colon normal tissue of human 2551
4	GSM667894	Bahati_NA15510_2.1	2,175,072	University of Washington	2011-02-04	[Oligo Array] Eichler-NimbleGen Human 2.1 HD2 CGH chip (GPL9684)	genomic	Gorilla gorilla,Homo sapiens	unclassified	source_name:Bahati NA15510 title:Bahati_NA15510_2.1
5	GSM668114	NA15510_Bahati_2.1	2,175,072	University of Washington	2011-02-04	[Oligo Array] Eichler-NimbleGen Human 2.1 HD2 CGH chip (GPL9684)	genomic	Homo sapiens,Gorilla gorilla	unclassified	source_name:NA15510 Bahati title:NA15510_Bahati_2.1
6	GSM602947	K562_H3K9me3	2,173,668	Sage Bionetworks	2010-10-01	[Oligo Array] NimbleGen-Homo_sapiens-2.1M-hg18 (GPL11008)	genomic	Homo sapiens	bone marrow	H3K9me3 ChIP DNA from K562 Total input DNA from K562
7	GSM602948	K562_G9a	2,173,668	Sage Bionetworks	2010-10-01	[Oligo Array] NimbleGen-Homo_sapiens-2.1M-hg18 (GPL11008)	genomic	Homo sapiens	bone marrow	G9a ChIP DNA from K562 Total input DNA from K562
8	GSM602949	K562_SetDB1	2,173,668	Sage Bionetworks	2010-10-01	[Oligo Array] NimbleGen-Homo_sapiens-2.1M-hg18 (GPL11008)	genomic	Homo sapiens	bone marrow	SetDB1 ChIP DNA from K562 Total input DNA from K562
9	GSM602950	K562_KAP1	2,173,668	Sage Bionetworks	2010-10-01	[Oligo Array] NimbleGen-Homo_sapiens-2.1M-hg18 (GPL11008)	genomic	Homo sapiens	bone marrow	KAP1 ChIP DNA from K562 Total input DNA from K562
10	GSM565259	Raji 1X	2,173,622	SRA International, Inc	2010-07-12	[Oligo Array] 080814_HG18_Deluxe_Promoter_HX1 (GPL10671)	genomic	Homo sapiens	lymphnode	Raji 1X
11	GSM565260	Raji 2X	2,173,622	SRA International, Inc	2010-07-12	[Oligo Array] 080814_HG18_Deluxe_Promoter_HX1 (GPL10671)	genomic	Homo sapiens	lymphnode	Raji 2X
12	GSM565261	H929 1X	2,173,622	SRA International, Inc	2010-07-12	[Oligo Array] 080814_HG18_Deluxe_Promoter_HX1 (GPL10671)	genomic	Homo sapiens	unclassified	source_name:MIRA-enriched DNA Input DNA title:H929 1X description:MIRA-chip from H929
13	GSM565262	H929 2X	2,173,622	SRA International, Inc	2010-07-12	[Oligo Array] 080814_HG18_Deluxe_Promoter_HX1 (GPL10671)	genomic	Homo sapiens	unclassified	source_name:MIRA-enriched DNA Input DNA title:H929 2X description:MIRA-chip from H929
14	GSM737207	Flag_Rpb2	2,173,622	uw-madison	2011-06-03	[Oligo Array] 080814_HG18_Deluxe_Promoter_HX1 (GPL10671)	genomic	Homo sapiens	unclassified	source_name:FLAG ChIP DNA from wt Rpb2 Input ChIP DNA from wt Rpb2 title:Flag_Rpb2
15	GSM737208	Flag_delta_flap_Rpb2	2,173,622	uw-madison	2011-06-03	[Oligo Array] 080814_HG18_Deluxe_Promoter_HX1 (GPL10671)	genomic	Homo sapiens	unclassified	source_name:FLAG ChIP DNA from delta flap Rpb2 Input ChIP DNA from delta flap Rpb2 title:Flag_delta_flap_Rpb2
16	GSM737209	8wg16_Rpb2	2,173,622	uw-madison	2011-06-03	[Oligo Array] 080814_HG18_Deluxe_Promoter_HX1 (GPL10671)	genomic	Homo sapiens	unclassified	source_name:8wg16 ChIP DNA from wt Rpb2 Input ChIP DNA from wt Rpb2 title:8wg16_Rpb2
17	GSM1139107	MS8_Meishan pig	2,167,769	China Agriculture University	2013-05-11	[Oligo Array] NimbleGen Sus scrofa 2.1M CGH array [120529_Sscr_10_2_WG_JH_CGH_HX1] (GPL17150)	genomic	Sus scrofa	peripheral nerve	[test] ear tissue [reference] ear tissue
18	GSM1139108	MS7_Meishan pig	2,167,769	China Agriculture University	2013-05-11	[Oligo Array] NimbleGen Sus scrofa 2.1M CGH array [120529_Sscr_10_2_WG_JH_CGH_HX1] (GPL17150)	genomic	Sus scrofa	peripheral nerve	[test] ear tissue [reference] ear tissue
19	GSM1139109	Z2_Tibetan pig	2,167,769	China Agriculture University	2013-05-11	[Oligo Array] NimbleGen Sus scrofa 2.1M CGH array [120529_Sscr_10_2_WG_JH_CGH_HX1] (GPL17150)	genomic	Sus scrofa	peripheral nerve	[test] ear tissue [reference] ear tissue
20	GSM1139110	A1_wild pig	2,167,769	China Agriculture University	2013-05-11	[Oligo Array] NimbleGen Sus scrofa 2.1M CGH array [120529_Sscr_10_2_WG_JH_CGH_HX1] (GPL17150)	genomic	Sus scrofa	peripheral nerve	[test] ear tissue [reference] ear tissue

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