Gene Expression Omnibus (GEO) Overview Version：2013-04-06Japanese page
An overview of the GEO entries broken down by the measurement platforms and the features of the measured samples.
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Data Unit : [ DataSet / Sample / Platform ] Show explanation>> <<Hide explanation
DataSet : Series(GSE) x Platform(GPL). A set of related gene expression data.
Sample : Biological materials.
platform : Methods or instruments used for the gene expression profilings.
The numbers shown in the tabs are the numbers of the data (series, samples or platforms) belonging to the groups.
  Human
(16,809)		   Primates
(92)		   Rodents
(3,032)		   Mammals
(210)		   Vertebrates
(477)		   Invertebrates
(441)		   Plants
(1,631)		   Bacteria
(1,637)		   Viruses
(30)		   Phages
(0)		   Unclassified
(54)		   All
(24,413)		  
  SAGE NlaIII
(31)		   SAGE RsaI
(0)		   SAGE Sau3A
(0)		   MPSS
(24)		   GeneChip
(15,192)		   Tiling Array
(1,072)		   cDNA Array
(4,158)		   Oligo Array
(3,543)		   Bead Array
(364)		   Protein Array
(0)		   Antibody
(0)		   RT-PCR
(0)		   HT-Seq
(22)		   Other
(7)		   All
(24,413)		  
  brain
(295)		   blood
(329)		   connective
(279)		   reproductive
(185)		   muscular
(30)		   digestive
(143)		   liver
(305)		   lung
(119)		   urinary
(21)		   endo/exo-crine
(47)		   embryo
(39)		   adult aerial structure
(0)		   young aerial structure
(0)		   root
(4)		   meristem/growing tissue
(20)		   flower/sexual organ
(9)		   seed/fruit/grain
(12)		   pooled
(316)		   unclassified
(1,390)		   all
(3,543)		  
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Sample ID Title Number of Data Institute Submission date Platform Sample type Species Organ class Reasoning of the classification
Keywords used for the classification are shown with bold font.
1 GSM170705 Beaupré leaves mock-inoculated with water (control, T48 Bpre_T48_Rep1) 388,340 INRA 2007-02-21 [Oligo Array] Populus 2.0 (GPL2699) RNA Populus trichocarpa,Populus deltoides
Populus trichocarpa,Populus deltoides		 unclassified source_name:Beaupré leaves mock-inoculated with water, 48 hours post-inoculation (control, T48) title:Beaupré leaves mock-inoculated with water (control, T48 Bpre_T48_Rep1) description:Procedure for spot detection was performed by NimbleGen Company
2 GSM170711 Beaupré leaves mock-inoculated with water (control, T48 Bpre_T48_Rep2) 388,340 INRA 2007-02-21 [Oligo Array] Populus 2.0 (GPL2699) RNA Populus trichocarpa,Populus deltoides
Populus trichocarpa,Populus deltoides		 unclassified source_name:Beaupré leaves mock-inoculated with water, 48 hours post-inoculation (control, T48) title:Beaupré leaves mock-inoculated with water (control, T48 Bpre_T48_Rep2) description:Procedure for spot detection was performed by NimbleGen Company
3 GSM170717 Beaupré leaves mock-inoculated with water (control, T48 Bpre_T48_Rep3) 388,340 INRA 2007-02-21 [Oligo Array] Populus 2.0 (GPL2699) RNA Populus trichocarpa,Populus deltoides
Populus trichocarpa,Populus deltoides		 unclassified source_name:Beaupré leaves mock-inoculated with water, 48 hours post-inoculation (control, T48) title:Beaupré leaves mock-inoculated with water (control, T48 Bpre_T48_Rep3) description:Procedure for spot detection was performed by NimbleGen Company
4 GSM170723 Beaupré leaves inoculated with Melampsora larici-populina 93ID6 avirulent strain (Incompatible, I48 Bpre_I48_Rep1) 388,340 INRA 2007-02-21 [Oligo Array] Populus 2.0 (GPL2699) RNA Populus trichocarpa,Populus deltoides
Populus trichocarpa,Populus deltoides		 unclassified source_name:Beaupré leaves inoculated with Melampsora larici-populina 93ID6 avirulent strain, 48 hours post-inoculation (Incompatible, I48) title:Beaupré leaves inoculated with Melampsora larici-populina 93ID6 avirulent strain (Incompatible, I48 Bpre_I48_Rep1) description:Procedure for spot detection was performed by NimbleGen Company
5 GSM170729 Beaupré leaves inoculated with Melampsora larici-populina 93ID6 avirulent strain (Incompatible, I48 Bpre_I48_Rep2) 388,340 INRA 2007-02-21 [Oligo Array] Populus 2.0 (GPL2699) RNA Populus trichocarpa,Populus deltoides
Populus trichocarpa,Populus deltoides		 unclassified source_name:Beaupré leaves inoculated with Melampsora larici-populina 93ID6 avirulent strain, 48 hours post-inoculation (Incompatible, I48) title:Beaupré leaves inoculated with Melampsora larici-populina 93ID6 avirulent strain (Incompatible, I48 Bpre_I48_Rep2) description:Procedure for spot detection was performed by NimbleGen Company
6 GSM170734 Beaupré leaves inoculated with Melampsora larici-populina 93ID6 avirulent strain (Incompatible, I48 Bpre_I48_Rep3) 388,340 INRA 2007-02-21 [Oligo Array] Populus 2.0 (GPL2699) RNA Populus trichocarpa,Populus deltoides
Populus trichocarpa,Populus deltoides		 unclassified source_name:Beaupré leaves inoculated with Melampsora larici-populina 93ID6 avirulent strain, 48 hours post-inoculation (Incompatible, I48) title:Beaupré leaves inoculated with Melampsora larici-populina 93ID6 avirulent strain (Incompatible, I48 Bpre_I48_Rep3) description:Procedure for spot detection was performed by NimbleGen Company
7 GSM170739 Beaupré leaves inoculated with Melampsora larici-populina 98AG31 virulent strain (Compatible, C48 Bpre_C48_Rep1) 388,340 INRA 2007-02-21 [Oligo Array] Populus 2.0 (GPL2699) RNA Populus trichocarpa,Populus deltoides
Populus trichocarpa,Populus deltoides		 unclassified source_name:Beaupré leaves inoculated with Melampsora larici-populina 98AG31 virulent strain, 48 hours post-inoculation (Compatible, C48) title:Beaupré leaves inoculated with Melampsora larici-populina 98AG31 virulent strain (Compatible, C48 Bpre_C48_Rep1) description:Procedure for spot detection was performed by NimbleGen Company
8 GSM170744 Beaupré leaves inoculated with Melampsora larici-populina 98AG31 virulent strain (Compatible, C48 Bpre_C48_Rep2) 388,340 INRA 2007-02-21 [Oligo Array] Populus 2.0 (GPL2699) RNA Populus trichocarpa,Populus deltoides
Populus trichocarpa,Populus deltoides		 unclassified source_name:Beaupré leaves inoculated with Melampsora larici-populina 98AG31 virulent strain, 48 hours post-inoculation (Compatible, C48) title:Beaupré leaves inoculated with Melampsora larici-populina 98AG31 virulent strain (Compatible, C48 Bpre_C48_Rep2) description:Procedure for spot detection was performed by NimbleGen Company
9 GSM170749 Beaupré leaves inoculated with Melampsora larici-populina 98AG31 virulent strain (Compatible, C48 Bpre_C48_Rep3) 388,340 INRA 2007-02-21 [Oligo Array] Populus 2.0 (GPL2699) RNA Populus trichocarpa,Populus deltoides
Populus trichocarpa,Populus deltoides		 unclassified source_name:Beaupré leaves inoculated with Melampsora larici-populina 98AG31 virulent strain, 48 hours post-inoculation (Compatible, C48) title:Beaupré leaves inoculated with Melampsora larici-populina 98AG31 virulent strain (Compatible, C48 Bpre_C48_Rep3) description:Procedure for spot detection was performed by NimbleGen Company
10 GSM153724 Human Ntera2 cells, siZNF217 Array 1, Control A 384,877 OSU Medical Center 2007-01-02 [Oligo Array] Nimblegen Human 5K promoter array 1 (GPL4704) genomic Homo sapiens
Homo sapiens		 unclassified source_name:Ntera2 cells title:Human Ntera2 cells, siZNF217 Array 1, Control A description:Human Ntera2 cells
11 GSM153726 Human Ntera2 cells, siZNF217 Array 1, Knockout A 384,877 OSU Medical Center 2007-01-02 [Oligo Array] Nimblegen Human 5K promoter array 1 (GPL4704) genomic Homo sapiens
Homo sapiens		 unclassified source_name:Ntera2 cells title:Human Ntera2 cells, siZNF217 Array 1, Knockout A description:Human Ntera2 cells
12 GSM153729 Human Ntera2 cells, siZNF217 Array 1, Knockout B 384,877 OSU Medical Center 2007-01-02 [Oligo Array] Nimblegen Human 5K promoter array 1 (GPL4704) genomic Homo sapiens
Homo sapiens		 unclassified source_name:Ntera2 cells title:Human Ntera2 cells, siZNF217 Array 1, Knockout B description:Human Ntera2 cells
13 GSM153730 Human Ntera2 cells, siZNF217 Array 1, Control B 384,877 OSU Medical Center 2007-01-02 [Oligo Array] Nimblegen Human 5K promoter array 1 (GPL4704) genomic Homo sapiens
Homo sapiens		 unclassified source_name:Ntera2 cells title:Human Ntera2 cells, siZNF217 Array 1, Control B description:Human Ntera2 cells
14 GSM153732 Human Ntera2 cells, CtBP2 Array 1, Replicate A 384,877 OSU Medical Center 2007-01-02 [Oligo Array] Nimblegen Human 5K promoter array 1 (GPL4704) genomic Homo sapiens
Homo sapiens		 unclassified source_name:Ntera2 cells title:Human Ntera2 cells, CtBP2 Array 1, Replicate A description:Human Ntera2 cells
15 GSM153734 Human Ntera2 cells, CtBP1 Array 1, Replicate A 384,877 OSU Medical Center 2007-01-02 [Oligo Array] Nimblegen Human 5K promoter array 1 (GPL4704) genomic Homo sapiens
Homo sapiens		 unclassified source_name:Ntera2 cells title:Human Ntera2 cells, CtBP1 Array 1, Replicate A description:Human Ntera2 cells
16 GSM153736 Human Ntera2 cells, siZNF Array 1, CtBP2 Knockout B 384,877 OSU Medical Center 2007-01-02 [Oligo Array] Nimblegen Human 5K promoter array 1 (GPL4704) genomic Homo sapiens
Homo sapiens		 unclassified source_name:Ntera2 cells title:Human Ntera2 cells, siZNF Array 1, CtBP2 Knockout B description:Human Ntera2 cells
17 GSM153737 Human Ntera2 cells, siZNF Array 1, CtBP2 Control B 384,877 OSU Medical Center 2007-01-02 [Oligo Array] Nimblegen Human 5K promoter array 1 (GPL4704) genomic Homo sapiens
Homo sapiens		 unclassified source_name:Ntera2 cells title:Human Ntera2 cells, siZNF Array 1, CtBP2 Control B description:Human Ntera2 cells
18 GSM153741 Human Ntera2 cells, IgG Array 1, Replicate A 384,877 OSU Medical Center 2007-01-02 [Oligo Array] Nimblegen Human 5K promoter array 1 (GPL4704) genomic Homo sapiens
Homo sapiens		 unclassified source_name:Ntera2 cells title:Human Ntera2 cells, IgG Array 1, Replicate A description:Human Ntera2 cells
19 GSM159410 Rice tissue "SLR", replicate experiment 1 381,324 Yale University 2007-01-30 [Oligo Array] Rice japonica 400K NimbleGen Oligo Array (GPL4794) RNA Oryza sativa
Oryza sativa		 pooled CAR: rice carpel; DES: rice developing seed; DKS: rice dark seedling shoot; FLL: rice flag leaf; LSS: rice light seedling shoot; MAL: rice mature leaf; SCC: rice suspension cell; SLR: rice seedling root; WFL: rice whole flower; XOO: rice leaf infected with Xoo.
20 GSM159411 Rice tissue "SLR", replicate experiment 2 381,324 Yale University 2007-01-30 [Oligo Array] Rice japonica 400K NimbleGen Oligo Array (GPL4794) RNA Oryza sativa
Oryza sativa		 pooled CAR: rice carpel; DES: rice developing seed; DKS: rice dark seedling shoot; FLL: rice flag leaf; LSS: rice light seedling shoot; MAL: rice mature leaf; SCC: rice suspension cell; SLR: rice seedling root; WFL: rice whole flower; XOO: rice leaf infected with Xoo.
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