Gene Expression Omnibus (GEO) Overview

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DataSet	:	Series(GSE) x Platform(GPL). A set of related gene expression data.
Sample	:	Biological materials.
platform	:	Methods or instruments used for the gene expression profilings.

Human
(0)

Primates
(0)

Rodents
(0)

Mammals
(0)

Vertebrates
(0)

Invertebrates
(0)

Plants
(69)

Bacteria
(0)

Viruses
(0)

Phages
(0)

Unclassified
(0)

All
(69)

SAGE NlaIII
(0)

SAGE RsaI
(0)

SAGE Sau3A
(0)

MPSS
(0)

GeneChip
(43)

Tiling Array
(0)

cDNA Array
(0)

Oligo Array
(26)

Bead Array
(0)

Protein Array
(0)

Antibody
(0)

RT-PCR
(0)

HT-Seq
(0)

Other
(0)

All
(69)

brain
(0)

blood
(0)

connective
(0)

reproductive
(0)

muscular
(0)

digestive
(0)

liver
(0)

lung
(0)

urinary
(0)

endo/exo-crine
(0)

embryo
(0)

adult aerial structure
(0)

young aerial structure
(0)

root
(0)

meristem/growing tissue
(0)

flower/sexual organ
(0)

seed/fruit/grain
(0)

pooled
(0)

unclassified
(26)

all
(26)

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	Sample ID	Title	Number of Data	Institute	Submission date	Platform	Sample type	Species	Organ class	Reasoning of the classification Keywords used for the classification are shown with bold font.
1	GSM139036	Apo_Rep1	22,575	International Rice Research Institute	2006-10-05	[Oligo Array] Agilent-012106 Rice Oligo Microarray G4138A (Feature Number version) (GPL892)	RNA	Oryza sativa	unclassified	source_name:Apo_Control_Replication1 Apo_Drought_Replication1 title:Apo_Rep1 description:Keyword = rice Keyword = Drought stress
2	GSM139037	Apo_Rep2	22,575	International Rice Research Institute	2006-10-05	[Oligo Array] Agilent-012106 Rice Oligo Microarray G4138A (Feature Number version) (GPL892)	RNA	Oryza sativa	unclassified	source_name:Apo_control-Replication2 apo_Drought_replication2 title:Apo_Rep2 description:Keyword = rice Keyword = Drought stress
3	GSM139038	Apo_Rep3	22,575	International Rice Research Institute	2006-10-05	[Oligo Array] Agilent-012106 Rice Oligo Microarray G4138A (Feature Number version) (GPL892)	RNA	Oryza sativa	unclassified	source_name:Apo_Control_Replication3 Apo_drought_Replication3 title:Apo_Rep3 description:Keyword = rice Keyword = Drought stress
4	GSM139039	IR64_Rep1	22,575	International Rice Research Institute	2006-10-05	[Oligo Array] Agilent-012106 Rice Oligo Microarray G4138A (Feature Number version) (GPL892)	RNA	Oryza sativa	unclassified	source_name:IR64_Control_Replication1 IR64_Drought_Replication1 title:IR64_Rep1 description:Keyword = rice Keyword = Drought stress
5	GSM139040	IR64_Rep2	22,575	International Rice Research Institute	2006-10-05	[Oligo Array] Agilent-012106 Rice Oligo Microarray G4138A (Feature Number version) (GPL892)	RNA	Oryza sativa	unclassified	source_name:IR64_Control_Replication2 IR64-Drought_Replication2 title:IR64_Rep2 description:Keyword = rice Keyword = Drought stress
6	GSM139041	IR64_Rep3	22,575	International Rice Research Institute	2006-10-05	[Oligo Array] Agilent-012106 Rice Oligo Microarray G4138A (Feature Number version) (GPL892)	RNA	Oryza sativa	unclassified	source_name:IR64_Control_Replication3 IR64_Drought_Replication3 title:IR64_Rep3 description:Keyword = rice Keyword = Drought stress
7	GSM142290	Old Healthy 1	22,575	International Rice Research Institute	2006-10-25	[Oligo Array] Agilent-012106 Rice Oligo Microarray G4138A (Feature Number version) (GPL892)	RNA	Oryza sativa	unclassified	source_name:TW16-4 Healthy 1 TW16-69 Healthy 1 title:Old Healthy 1 description:TW16-4 and -69 were sister NIL (BC6) derived from the cross between a cultivar TN1 (recurrent parent) and Utri Merah (donor parent). TW16-4 is susceptible to rice tungro spherical virus (RTSV), and TW16-69 is resistant to RTSV.
8	GSM142291	Old Healthy 2	22,575	International Rice Research Institute	2006-10-25	[Oligo Array] Agilent-012106 Rice Oligo Microarray G4138A (Feature Number version) (GPL892)	RNA	Oryza sativa	unclassified	source_name:TW16-4 Healthy 2 TW16-69 Healthy 2 title:Old Healthy 2 description:TW16-4 and -69 were sister NIL (BC6) derived from the cross between a cultivar TN1 (recurrent parent) and Utri Merah (donor parent). TW16-4 is susceptible to rice tungro spherical virus (RTSV), and TW16-69 is resistant to RTSV.
9	GSM142292	Old Mock 1	22,575	International Rice Research Institute	2006-10-25	[Oligo Array] Agilent-012106 Rice Oligo Microarray G4138A (Feature Number version) (GPL892)	RNA	Oryza sativa	unclassified	source_name:TW16-4 Mock 1 TW16-69 Mock 1 title:Old Mock 1 description:TW16-4 and -69 were sister NIL (BC6) derived from the cross between cultivars TN1 (recurrent parent) and Utri Merah (donor parent). TW16-4 is susceptible to rice tungro spherical virus (RTSV), and TW16-69 is resistant to RTSV.
10	GSM142293	Old Mock 2	22,575	International Rice Research Institute	2006-10-25	[Oligo Array] Agilent-012106 Rice Oligo Microarray G4138A (Feature Number version) (GPL892)	RNA	Oryza sativa	unclassified	source_name:TW16-4 Mock 2 TW16-69 Mock 2 title:Old Mock 2 description:TW16-4 and -69 were sister NIL (BC6) derived from the cross between cultivars TN1 (recurrent parent) and Utri Merah (donor parent). TW16-4 is susceptible to rice tungro spherical virus (RTSV), and TW16-69 is resistant to RTSV.
11	GSM142294	New Mock 1	22,575	International Rice Research Institute	2006-10-25	[Oligo Array] Agilent-012106 Rice Oligo Microarray G4138A (Feature Number version) (GPL892)	RNA	Oryza sativa	unclassified	source_name:TW16-1263 Mock 1 TW16-1029 Mock 1 title:New Mock 1 description:TW16-1263 and -1029 were sister NIL (BC6) derived from the cross between cultivars TN1 (recurrent parent) and Utri Merah (donor parent). TW16-1263 is susceptible to rice tungro spherical virus (RTSV), and TW16-1029 is resistant to RTSV.
12	GSM142295	New Mock 2	22,575	International Rice Research Institute	2006-10-25	[Oligo Array] Agilent-012106 Rice Oligo Microarray G4138A (Feature Number version) (GPL892)	RNA	Oryza sativa	unclassified	source_name:TW16-1263 Mock 2 TW16-1029 Mock 2 title:New Mock 2 description:TW16-1263 and -1029 were sister NIL (BC6) derived from the cross between cultivars TN1 (recurrent parent) and Utri Merah (donor parent). TW16-1263 is susceptible to rice tungro spherical virus (RTSV), and TW16-1029 is resistant to RTSV.
13	GSM142296	New Healthy 1	22,575	International Rice Research Institute	2006-10-25	[Oligo Array] Agilent-012106 Rice Oligo Microarray G4138A (Feature Number version) (GPL892)	RNA	Oryza sativa	unclassified	source_name:TW16-1263 Healthy 1 TW16-1029 Healthy 1 title:New Healthy 1 description:TW16-1263 and -1029 were sister NIL (BC6) derived from the cross between cultivars TN1 (recurrent parent) and Utri Merah (donor parent). TW16-1263 is susceptible to rice tungro spherical virus (RTSV), and TW16-1029 is resistant to RTSV.
14	GSM142297	New Healthy 2	22,575	International Rice Research Institute	2006-10-25	[Oligo Array] Agilent-012106 Rice Oligo Microarray G4138A (Feature Number version) (GPL892)	RNA	Oryza sativa	unclassified	source_name:TW16-1263 Healthy 2 TW16-1029 Healthy 2 title:New Healthy 2 description:TW16-1263 and -1029 were sister NIL (BC6) derived from the cross between cultivars TN1 (recurrent parent) and Utri Merah (donor parent). TW16-1263 is susceptible to rice tungro spherical virus (RTSV), and TW16-1029 is resistant to RTSV.
15	GSM142298	Old RTSV 1	22,575	International Rice Research Institute	2006-10-25	[Oligo Array] Agilent-012106 Rice Oligo Microarray G4138A (Feature Number version) (GPL892)	RNA	Oryza sativa	unclassified	source_name:TW16-4 RTSV 1 TW16-69 RTSV 1 title:Old RTSV 1 description:TW16-4 and -69 were sister NIL (BC6) derived from the cross between cultivars TN1 (recurrent parent) and Utri Merah (donor parent). TW16-4 is susceptible to rice tungro spherical virus (RTSV), and TW16-69 is resistant to RTSV.
16	GSM142299	Old RTSV 2	22,575	International Rice Research Institute	2006-10-25	[Oligo Array] Agilent-012106 Rice Oligo Microarray G4138A (Feature Number version) (GPL892)	RNA	Oryza sativa	unclassified	source_name:TW16-4 RTSV 2 TW16-69 RTSV 2 title:Old RTSV 2 description:TW16-4 and -69 were sister NIL (BC6) derived from the cross between cultivars TN1 (recurrent parent) and Utri Merah (donor parent). TW16-4 is susceptible to rice tungro spherical virus (RTSV), and TW16-69 is resistant to RTSV.
17	GSM142300	New RTSV 1	22,575	International Rice Research Institute	2006-10-25	[Oligo Array] Agilent-012106 Rice Oligo Microarray G4138A (Feature Number version) (GPL892)	RNA	Oryza sativa	unclassified	source_name:TW16-1263 RTSV 1 TW16-1029 RTSV 1 title:New RTSV 1 description:TW16-1263 and -1029 were sister NIL (BC6) derived from the cross between cultivars TN1 (recurrent parent) and Utri Merah (donor parent). TW16-1263 is susceptible to rice tungro spherical virus (RTSV), and TW16-1029 is resistant to RTSV.
18	GSM142301	New RTSV 2	22,575	International Rice Research Institute	2006-10-25	[Oligo Array] Agilent-012106 Rice Oligo Microarray G4138A (Feature Number version) (GPL892)	RNA	Oryza sativa	unclassified	source_name:TW16-1263 RTSV 2 TW16-1029 RTSV 2 title:New RTSV 2 description:TW16-1263 and -1029 were sister NIL (BC6) derived from the cross between cultivars TN1 (recurrent parent) and Utri Merah (donor parent). TW16-1263 is susceptible to rice tungro spherical virus (RTSV), and TW16-1029 is resistant to RTSV.
19	GSM142302	RDA RSV 1	22,575	International Rice Research Institute	2006-10-25	[Oligo Array] Agilent-012106 Rice Oligo Microarray G4138A (Feature Number version) (GPL892)	RNA	Oryza sativa	unclassified	source_name:NIL37 RSV 1 NIL22 RSV 1 title:RDA RSV 1 description:NIL37 and NIL22 were sister NIL (BC4) derived from the cross between varieties Ilpum (recurrent parent) and Shinkwang (donor parent). NIL37 is susceptible to rice stripe virus (RSV), and NIL22 is resistant to RSV.
20	GSM142313	RDA RSV 2	22,575	International Rice Research Institute	2006-10-25	[Oligo Array] Agilent-012106 Rice Oligo Microarray G4138A (Feature Number version) (GPL892)	RNA	Oryza sativa	unclassified	source_name:NIL37 RSV 2 NIL22 RSV 2 title:RDA RSV 2 description:NIL37 and NIL22 were sister NIL (BC4) derived from the cross between varieties Ilpum (recurrent parent) and Shinkwang (donor parent). NIL37 is susceptible to rice stripe virus (RSV), and NIL22 is resistant to RSV.

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