Gene Expression Omnibus (GEO) Overview Version：2013-04-06Japanese page
An overview of the GEO entries broken down by the measurement platforms and the features of the measured samples.
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Data Unit : [ DataSet / Sample / Platform ] Show explanation>> <<Hide explanation
DataSet : Series(GSE) x Platform(GPL). A set of related gene expression data.
Sample : Biological materials.
platform : Methods or instruments used for the gene expression profilings.
The numbers shown in the tabs are the numbers of the data (series, samples or platforms) belonging to the groups.
  Human
(502,421)		   Primates
(4,928)		   Rodents
(181,106)		   Mammals
(16,260)		   Vertebrates
(18,263)		   Invertebrates
(37,338)		   Plants
(91,454)		   Bacteria
(39,082)		   Viruses
(1,266)		   Phages
(101)		   Unclassified
(5,242)		   All
(898,944)		  
  SAGE NlaIII
(1,683)		   SAGE RsaI
(3)		   SAGE Sau3A
(54)		   MPSS
(439)		   GeneChip
(377,145)		   Tiling Array
(21,846)		   cDNA Array
(103,476)		   Oligo Array
(239,584)		   Bead Array
(106,999)		   Protein Array
(5)		   Antibody
(1,152)		   RT-PCR
(3,959)		   HT-Seq
(35,574)		   Other
(6,909)		   All
(898,944)		  
  brain
(10,583)		   blood
(30,578)		   connective
(12,519)		   reproductive
(8,009)		   muscular
(4,910)		   digestive
(7,795)		   liver
(23,572)		   lung
(6,574)		   urinary
(3,898)		   endo/exo-crine
(12,667)		   embryo
(3,693)		   adult aerial structure
(4,120)		   young aerial structure
(1,049)		   root
(1,088)		   meristem/growing tissue
(442)		   flower/sexual organ
(950)		   seed/fruit/grain
(824)		   pooled
(15,623)		   unclassified
(90,690)		   all
(239,584)		  
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Sample ID Title Number of Data Institute Submission date Platform Sample type Species Organ class Reasoning of the classification
Keywords used for the classification are shown with bold font.
1 GSM552522 Zic3 ChIP-on-chip in mouse ES cells 243,496 Genome Institute of Singapore 2010-06-08 [Oligo Array] Agilent-014716 Mouse Promoter ChIP-on-Chip Set 244K, Microarray 1 of 2 (G4490A) (Feature Number version) (GPL4128) genomic Mus musculus
Mus musculus		 embryo Zic3 ChIP-on-chip in mouse ES cells
2 GSM552532 Zic3 ChIP-on-chip in mouse ES cells 243,486 Genome Institute of Singapore 2010-06-08 [Oligo Array] Agilent-014717 Mouse Promoter ChIP-on-Chip Set 244K, Microarray 2 of 2 (G4490A) (Feature Number version) (GPL4129) genomic Mus musculus
Mus musculus		 embryo Zic3 ChIP-on-chip in mouse ES cells
3 GSM526906 ZF4_IPNV_6hr postinfection_dyeswap sample 1 13,687 Academia Sinica 2010-03-26 [Oligo Array] MWG_Zebrafish_14K (GPL5182) RNA Danio rerio
Danio rerio		 embryo Zebrafish ZF4 cell line derived from 24-hpf zebrafish embryos was purchased from the American Type Culture Collection (CRL-2050) and cultured in RPMI 1640 medium supplemented with 10% (v/v) fetal bovine serum and penicillin-streptomycin. The isolated virus, E1-S, a member of the Ab strain of IPNV, was isolated from Japanese eels in Taiwan. The commercial zebrafish 14K oligonucleotides set (MWG Biotech AG, Ebersbach, Germany) were obtained and were printed on UltraGAPS Coated slide (Corning, New York, NY ) with use of the OmniGrid 100 microarrayer (Genomic Solutions, Ann Arbor, MI) according to the manufacture’s instructions. The 14,067 oligonucleotides represent 9666 genes (7009 singlet genes and 2657 redundant genes), and the redundancy of this chip is 31 %.
4 GSM526905 ZF4_IPNV_6hr postinfection sample 3 13,687 Academia Sinica 2010-03-26 [Oligo Array] MWG_Zebrafish_14K (GPL5182) RNA Danio rerio
Danio rerio		 embryo Zebrafish ZF4 cell line derived from 24-hpf zebrafish embryos was purchased from the American Type Culture Collection (CRL-2050) and cultured in RPMI 1640 medium supplemented with 10% (v/v) fetal bovine serum and penicillin-streptomycin. The isolated virus, E1-S, a member of the Ab strain of IPNV, was isolated from Japanese eels in Taiwan. The commercial zebrafish 14K oligonucleotides set (MWG Biotech AG, Ebersbach, Germany) were obtained and were printed on UltraGAPS Coated slide (Corning, New York, NY ) with use of the OmniGrid 100 microarrayer (Genomic Solutions, Ann Arbor, MI) according to the manufacture’s instructions. The 14,067 oligonucleotides represent 9666 genes (7009 singlet genes and 2657 redundant genes), and the redundancy of this chip is 31 %.
5 GSM526904 ZF4_IPNV_6hr postinfection sample 2 13,687 Academia Sinica 2010-03-26 [Oligo Array] MWG_Zebrafish_14K (GPL5182) RNA Danio rerio
Danio rerio		 embryo Zebrafish ZF4 cell line derived from 24-hpf zebrafish embryos was purchased from the American Type Culture Collection (CRL-2050) and cultured in RPMI 1640 medium supplemented with 10% (v/v) fetal bovine serum and penicillin-streptomycin. The isolated virus, E1-S, a member of the Ab strain of IPNV, was isolated from Japanese eels in Taiwan. The commercial zebrafish 14K oligonucleotides set (MWG Biotech AG, Ebersbach, Germany) were obtained and were printed on UltraGAPS Coated slide (Corning, New York, NY ) with use of the OmniGrid 100 microarrayer (Genomic Solutions, Ann Arbor, MI) according to the manufacture’s instructions. The 14,067 oligonucleotides represent 9666 genes (7009 singlet genes and 2657 redundant genes), and the redundancy of this chip is 31 %.
6 GSM526903 ZF4_IPNV_6hr postinfection sample 1 13,687 Academia Sinica 2010-03-26 [Oligo Array] MWG_Zebrafish_14K (GPL5182) RNA Danio rerio
Danio rerio		 embryo Zebrafish ZF4 cell line derived from 24-hpf zebrafish embryos was purchased from the American Type Culture Collection (CRL-2050) and cultured in RPMI 1640 medium supplemented with 10% (v/v) fetal bovine serum and penicillin-streptomycin. The isolated virus, E1-S, a member of the Ab strain of IPNV, was isolated from Japanese eels in Taiwan. The commercial zebrafish 14K oligonucleotides set (MWG Biotech AG, Ebersbach, Germany) were obtained and were printed on UltraGAPS Coated slide (Corning, New York, NY ) with use of the OmniGrid 100 microarrayer (Genomic Solutions, Ann Arbor, MI) according to the manufacture’s instructions. The 14,067 oligonucleotides represent 9666 genes (7009 singlet genes and 2657 redundant genes), and the redundancy of this chip is 31 %.
7 GSM526912 ZF4_IPNV_24hr postinfection sample 2 13,687 Academia Sinica 2010-03-26 [Oligo Array] MWG_Zebrafish_14K (GPL5182) RNA Danio rerio
Danio rerio		 embryo Zebrafish ZF4 cell line derived from 24-hpf zebrafish embryos was purchased from the American Type Culture Collection (CRL-2050) and cultured in RPMI 1640 medium supplemented with 10% (v/v) fetal bovine serum and penicillin-streptomycin. The isolated virus, E1-S, a member of the Ab strain of IPNV, was isolated from Japanese eels in Taiwan. The commercial zebrafish 14K oligonucleotides set (MWG Biotech AG, Ebersbach, Germany) were obtained and were printed on UltraGAPS Coated slide (Corning, New York, NY ) with use of the OmniGrid 100 microarrayer (Genomic Solutions, Ann Arbor, MI) according to the manufacture’s instructions. The 14,067 oligonucleotides represent 9666 genes (7009 singlet genes and 2657 redundant genes), and the redundancy of this chip is 31 %.
8 GSM526911 ZF4_IPNV_24hr postinfection sample 1 13,687 Academia Sinica 2010-03-26 [Oligo Array] MWG_Zebrafish_14K (GPL5182) RNA Danio rerio
Danio rerio		 embryo Zebrafish ZF4 cell line derived from 24-hpf zebrafish embryos was purchased from the American Type Culture Collection (CRL-2050) and cultured in RPMI 1640 medium supplemented with 10% (v/v) fetal bovine serum and penicillin-streptomycin. The isolated virus, E1-S, a member of the Ab strain of IPNV, was isolated from Japanese eels in Taiwan. The commercial zebrafish 14K oligonucleotides set (MWG Biotech AG, Ebersbach, Germany) were obtained and were printed on UltraGAPS Coated slide (Corning, New York, NY ) with use of the OmniGrid 100 microarrayer (Genomic Solutions, Ann Arbor, MI) according to the manufacture’s instructions. The 14,067 oligonucleotides represent 9666 genes (7009 singlet genes and 2657 redundant genes), and the redundancy of this chip is 31 %.
9 GSM526914 ZF4_IPNV_24hr postinfection dyeswap sample 2 13,687 Academia Sinica 2010-03-26 [Oligo Array] MWG_Zebrafish_14K (GPL5182) RNA Danio rerio
Danio rerio		 embryo Zebrafish ZF4 cell line derived from 24-hpf zebrafish embryos was purchased from the American Type Culture Collection (CRL-2050) and cultured in RPMI 1640 medium supplemented with 10% (v/v) fetal bovine serum and penicillin-streptomycin. The isolated virus, E1-S, a member of the Ab strain of IPNV, was isolated from Japanese eels in Taiwan. The commercial zebrafish 14K oligonucleotides set (MWG Biotech AG, Ebersbach, Germany) were obtained and were printed on UltraGAPS Coated slide (Corning, New York, NY ) with use of the OmniGrid 100 microarrayer (Genomic Solutions, Ann Arbor, MI) according to the manufacture’s instructions. The 14,067 oligonucleotides represent 9666 genes (7009 singlet genes and 2657 redundant genes), and the redundancy of this chip is 31 %.
10 GSM526913 ZF4_IPNV_24hr postinfection dyeswap sample 1 13,687 Academia Sinica 2010-03-26 [Oligo Array] MWG_Zebrafish_14K (GPL5182) RNA Danio rerio
Danio rerio		 embryo Zebrafish ZF4 cell line derived from 24-hpf zebrafish embryos was purchased from the American Type Culture Collection (CRL-2050) and cultured in RPMI 1640 medium supplemented with 10% (v/v) fetal bovine serum and penicillin-streptomycin. The isolated virus, E1-S, a member of the Ab strain of IPNV, was isolated from Japanese eels in Taiwan. The commercial zebrafish 14K oligonucleotides set (MWG Biotech AG, Ebersbach, Germany) were obtained and were printed on UltraGAPS Coated slide (Corning, New York, NY ) with use of the OmniGrid 100 microarrayer (Genomic Solutions, Ann Arbor, MI) according to the manufacture’s instructions. The 14,067 oligonucleotides represent 9666 genes (7009 singlet genes and 2657 redundant genes), and the redundancy of this chip is 31 %.
11 GSM526908 ZF4_IPNV_12hr postinfection sample 2 13,687 Academia Sinica 2010-03-26 [Oligo Array] MWG_Zebrafish_14K (GPL5182) RNA Danio rerio
Danio rerio		 embryo Zebrafish ZF4 cell line derived from 24-hpf zebrafish embryos was purchased from the American Type Culture Collection (CRL-2050) and cultured in RPMI 1640 medium supplemented with 10% (v/v) fetal bovine serum and penicillin-streptomycin. The isolated virus, E1-S, a member of the Ab strain of IPNV, was isolated from Japanese eels in Taiwan. The commercial zebrafish 14K oligonucleotides set (MWG Biotech AG, Ebersbach, Germany) were obtained and were printed on UltraGAPS Coated slide (Corning, New York, NY ) with use of the OmniGrid 100 microarrayer (Genomic Solutions, Ann Arbor, MI) according to the manufacture’s instructions. The 14,067 oligonucleotides represent 9666 genes (7009 singlet genes and 2657 redundant genes), and the redundancy of this chip is 31 %.
12 GSM526907 ZF4_IPNV_12hr postinfection sample 1 13,687 Academia Sinica 2010-03-26 [Oligo Array] MWG_Zebrafish_14K (GPL5182) RNA Danio rerio
Danio rerio		 embryo Zebrafish ZF4 cell line derived from 24-hpf zebrafish embryos was purchased from the American Type Culture Collection (CRL-2050) and cultured in RPMI 1640 medium supplemented with 10% (v/v) fetal bovine serum and penicillin-streptomycin. The isolated virus, E1-S, a member of the Ab strain of IPNV, was isolated from Japanese eels in Taiwan. The commercial zebrafish 14K oligonucleotides set (MWG Biotech AG, Ebersbach, Germany) were obtained and were printed on UltraGAPS Coated slide (Corning, New York, NY ) with use of the OmniGrid 100 microarrayer (Genomic Solutions, Ann Arbor, MI) according to the manufacture’s instructions. The 14,067 oligonucleotides represent 9666 genes (7009 singlet genes and 2657 redundant genes), and the redundancy of this chip is 31 %.
13 GSM526910 ZF4_IPNV_12hr postinfection dyeswap sample 2 13,687 Academia Sinica 2010-03-26 [Oligo Array] MWG_Zebrafish_14K (GPL5182) RNA Danio rerio
Danio rerio		 embryo Zebrafish ZF4 cell line derived from 24-hpf zebrafish embryos was purchased from the American Type Culture Collection (CRL-2050) and cultured in RPMI 1640 medium supplemented with 10% (v/v) fetal bovine serum and penicillin-streptomycin. The isolated virus, E1-S, a member of the Ab strain of IPNV, was isolated from Japanese eels in Taiwan. The commercial zebrafish 14K oligonucleotides set (MWG Biotech AG, Ebersbach, Germany) were obtained and were printed on UltraGAPS Coated slide (Corning, New York, NY ) with use of the OmniGrid 100 microarrayer (Genomic Solutions, Ann Arbor, MI) according to the manufacture’s instructions. The 14,067 oligonucleotides represent 9666 genes (7009 singlet genes and 2657 redundant genes), and the redundancy of this chip is 31 %.
14 GSM526909 ZF4_IPNV_12hr postinfection dyeswap sample 1 13,687 Academia Sinica 2010-03-26 [Oligo Array] MWG_Zebrafish_14K (GPL5182) RNA Danio rerio
Danio rerio		 embryo Zebrafish ZF4 cell line derived from 24-hpf zebrafish embryos was purchased from the American Type Culture Collection (CRL-2050) and cultured in RPMI 1640 medium supplemented with 10% (v/v) fetal bovine serum and penicillin-streptomycin. The isolated virus, E1-S, a member of the Ab strain of IPNV, was isolated from Japanese eels in Taiwan. The commercial zebrafish 14K oligonucleotides set (MWG Biotech AG, Ebersbach, Germany) were obtained and were printed on UltraGAPS Coated slide (Corning, New York, NY ) with use of the OmniGrid 100 microarrayer (Genomic Solutions, Ann Arbor, MI) according to the manufacture’s instructions. The 14,067 oligonucleotides represent 9666 genes (7009 singlet genes and 2657 redundant genes), and the redundancy of this chip is 31 %.
15 GSM1083955 zebrafish_30h_ras-hs_r2 37,176 Children's Hospital Boston 2013-02-15 [Oligo Array] Children's Hospital Boston Danio rerio 385K Array [071105_Zv7 - gene level] (GPL14376) RNA Danio rerio
Danio rerio		 embryo whole embryo
16 GSM1083954 zebrafish_30h_ras-hs_r1 37,176 Children's Hospital Boston 2013-02-15 [Oligo Array] Children's Hospital Boston Danio rerio 385K Array [071105_Zv7 - gene level] (GPL14376) RNA Danio rerio
Danio rerio		 embryo whole embryo
17 GSM1083957 zebrafish_30h_ab-hs_r2 37,176 Children's Hospital Boston 2013-02-15 [Oligo Array] Children's Hospital Boston Danio rerio 385K Array [071105_Zv7 - gene level] (GPL14376) RNA Danio rerio
Danio rerio		 embryo whole embryo
18 GSM1083956 zebrafish_30h_ab-hs_r1 37,176 Children's Hospital Boston 2013-02-15 [Oligo Array] Children's Hospital Boston Danio rerio 385K Array [071105_Zv7 - gene level] (GPL14376) RNA Danio rerio
Danio rerio		 embryo whole embryo
19 GSM799463 Zebrafish-embryo_100uM-DEM-treated_4 18,144 Mie University Graduate School of Bioresources 2011-09-21 [Oligo Array] MZH_Zebrafish_16k_v1.0 (GPL14379) RNA Danio rerio
Danio rerio		 embryo Zebrafish-embryo_100uM-DEM-treated_4
20 GSM799462 Zebrafish-embryo_100uM-DEM-treated_3 18,144 Mie University Graduate School of Bioresources 2011-09-21 [Oligo Array] MZH_Zebrafish_16k_v1.0 (GPL14379) RNA Danio rerio
Danio rerio		 embryo Zebrafish-embryo_100uM-DEM-treated_3
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