Gene Expression Omnibus (GEO) Overview Version：2013-04-06Japanese page

An overview of the GEO entries broken down by the measurement platforms and the features of the measured samples.

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Human (2,851)   Primates (0)   Rodents (2,590)   Mammals (0)   Vertebrates (0)   Invertebrates (0)   Plants (464)   Bacteria (0)   Viruses (0)   Phages (0)   Unclassified (0)   All (6,302)

SAGE NlaIII (0)   SAGE RsaI (0)   SAGE Sau3A (5)   MPSS (0)   GeneChip (2,621)   Tiling Array (0)   cDNA Array (1,964)   Oligo Array (1,212)   Bead Array (0)   Protein Array (0)   Antibody (0)   RT-PCR (0)   HT-Seq (0)   Other (0)   All (6,302)     brain (27)   blood (167)   connective (25)   reproductive (0)   muscular (0)   digestive (0)   liver (306)   lung (0)   urinary (0)   endo/exo-crine (152)   embryo (0)   adult aerial structure (0)   young aerial structure (0)   root (0)   meristem/growing tissue (0)   flower/sexual organ (0)   seed/fruit/grain (0)   pooled (190)   unclassified (153)   all (1,212)   1   |   2   |   3   |   4   |   5      »      [8] Sample ID Title Number of Data Institute Submission date Platform Sample type Species Organ class Reasoning of the classification Keywords used for the classification are shown with bold font. 1 GSM34214 TGCT cell line 2102Ep/clone 2A6, treated 7 days with retinoic acid 19,061 Rikshospitalet-Radiumhospitalet Medical Center, Institute for Cancer Research 2004-10-29 [Oligo Array] Agilent-011521 Human 1A Microarray G4110A (Feature Number version) (GPL885) RNA Homo sapiens unclassified source_name:TGCT cell line 2102Ep/clone 2A6, treated 7 days with retinoic acid Universal Human Reference RNA (Stratagene) title:TGCT cell line 2102Ep/clone 2A6, treated 7 days with retinoic acid description:paste from 3 days... Keywords = paste from 3 days... 2 GSM34061 Teeth 39,309 University of Toronto 2004-10-28 [Oligo Array] Mouse XM microarray set (GPL1537) RNA Mus musculus unclassified source_name:Teeth title:Teeth description:Pool of RNA from Teeth tissue 3 GSM35285 Spanish soil sample S5, replicate 2 1,200 University of British Columbia 2004-11-13 [Oligo Array] SARST microarray (GPL1705) genomic Bacteria unclassified source_name:Soil sample from Portugalete title:Spanish soil sample S5, replicate 2 description:Comparison of hexachlorocyclohexane (HCH) contaminated soils from Spain with a community-specific microarray. Location Portugalete Depth 10 alpha-HCH (ppm) 4.36 Total HCH (ppm) 8.95 Heterotrophic counts 9.20E+06 Fungal counts 2.20E+04 pH 8.4 Organic matter 3.27 4 GSM35280 Spanish soil sample S5, replicate 1 1,200 University of British Columbia 2004-11-13 [Oligo Array] SARST microarray (GPL1705) genomic Bacteria unclassified source_name:Soil sample from Portugalete title:Spanish soil sample S5, replicate 1 description:Comparison of hexachlorocyclohexane (HCH) contaminated soils from Spain with a community-specific microarray. Location Portugalete Depth 10 alpha-HCH (ppm) 4.36 Total HCH (ppm) 8.95 Heterotrophic counts 9.20E+06 Fungal counts 2.20E+04 pH 8.4 Organic matter 3.27 5 GSM35279 Spanish soil sample S4, replicate 2 1,200 University of British Columbia 2004-11-13 [Oligo Array] SARST microarray (GPL1705) genomic Bacteria unclassified source_name:Soil sample from Ansio title:Spanish soil sample S4, replicate 2 description:Comparison of hexachlorocyclohexane (HCH) contaminated soils from Spain with a community-specific microarray. Location Ansio Depth 100 alpha-HCH (ppm) 3580 Total HCH (ppm) 3750 Heterotrophic counts 5.14E+05 Fungal counts 3.51E+03 pH 5.9 Organic matter 3.96 6 GSM35278 Spanish soil sample S4, replicate 1 1,200 University of British Columbia 2004-11-13 [Oligo Array] SARST microarray (GPL1705) genomic Bacteria unclassified source_name:Soil sample from Ansio title:Spanish soil sample S4, replicate 1 description:Comparison of hexachlorocyclohexane (HCH) contaminated soils from Spain with a community-specific microarray. Location Ansio Depth 100 alpha-HCH (ppm) 3580 Total HCH (ppm) 3750 Heterotrophic counts 5.14E+05 Fungal counts 3.51E+03 pH 5.9 Organic matter 3.96 7 GSM35277 Spanish soil sample S16, replicate 2 1,200 University of British Columbia 2004-11-13 [Oligo Array] SARST microarray (GPL1705) genomic Bacteria unclassified source_name:Soil sample from Artxanda title:Spanish soil sample S16, replicate 2 description:Comparison of hexachlorocyclohexane (HCH) contaminated soils from Spain with a community-specific microarray. Location Artxanda Depth 10 alpha-HCH (ppm) 17.7 Total HCH (ppm) 53.3 Heterotrophic counts 4.30E+06 Fungal counts 1.05E+04 pH 7.2 Organic matter 31.9 8 GSM35276 Spanish soil sample S16, replicate 1 1,200 University of British Columbia 2004-11-13 [Oligo Array] SARST microarray (GPL1705) genomic Bacteria unclassified source_name:Soil sample from Artxanda title:Spanish soil sample S16, replicate 1 description:Comparison of hexachlorocyclohexane (HCH) contaminated soils from Spain with a community-specific microarray. Location Artxanda Depth 10 alpha-HCH (ppm) 17.7 Total HCH (ppm) 53.3 Heterotrophic counts 4.30E+06 Fungal counts 1.05E+04 pH 7.2 Organic matter 31.9 9 GSM35275 Spanish soil sample S15, replicate 2 1,200 University of British Columbia 2004-11-13 [Oligo Array] SARST microarray (GPL1705) genomic Bacteria unclassified source_name:Soil sample from Artxanda title:Spanish soil sample S15, replicate 2 description:Comparison of hexachlorocyclohexane (HCH) contaminated soils from Spain with a community-specific microarray. Location Artxanda Depth 10 alpha-HCH (ppm) 1900 Total HCH (ppm) 21800 Heterotrophic counts 6.61E+06 Fungal counts 4.63E+04 pH 4.4 Organic matter 18.6 10 GSM35274 Spanish soil sample S15, replicate 1 1,200 University of British Columbia 2004-11-13 [Oligo Array] SARST microarray (GPL1705) genomic Bacteria unclassified source_name:Soil sample from Artxanda title:Spanish soil sample S15, replicate 1 description:Comparison of hexachlorocyclohexane (HCH) contaminated soils from Spain with a community-specific microarray. Location Artxanda Depth 10 alpha-HCH (ppm) 1900 Total HCH (ppm) 21800 Heterotrophic counts 6.61E+06 Fungal counts 4.63E+04 pH 4.4 Organic matter 18.6 11 GSM35273 Spanish soil sample S14, replicate 2 1,200 University of British Columbia 2004-11-13 [Oligo Array] SARST microarray (GPL1705) genomic Bacteria unclassified source_name:Soil sample from Artxanda title:Spanish soil sample S14, replicate 2 description:Comparison of hexachlorocyclohexane (HCH) contaminated soils from Spain with a community-specific microarray. Location Artxanda Depth 10 alpha-HCH (ppm) 1270 Total HCH (ppm) 13500 Heterotrophic counts 5.43E+05 Fungal counts 4.18E+04 pH 3.6 Organic matter 96.4 12 GSM35272 Spanish soil sample S14, replicate 1 1,200 University of British Columbia 2004-11-13 [Oligo Array] SARST microarray (GPL1705) genomic Bacteria unclassified source_name:Soil sample from Artxanda title:Spanish soil sample S14, replicate 1 description:Comparison of hexachlorocyclohexane (HCH) contaminated soils from Spain with a community-specific microarray. Location Artxanda Depth 10 alpha-HCH (ppm) 1270 Total HCH (ppm) 13500 Heterotrophic counts 5.43E+05 Fungal counts 4.18E+04 pH 3.6 Organic matter 96.4 13 GSM35271 Spanish soil sample S12, replicate 2 1,200 University of British Columbia 2004-11-13 [Oligo Array] SARST microarray (GPL1705) genomic Bacteria unclassified source_name:Soil sample from Artxanda title:Spanish soil sample S12, replicate 2 description:Comparison of hexachlorocyclohexane (HCH) contaminated soils from Spain with a community-specific microarray. Location Artxanda Depth 8 alpha-HCH (ppm) 0.17 Total HCH (ppm) 0.4 Heterotrophic counts 4.01E+06 Fungal counts 6.41E+03 pH 7.6 Organic matter 31.8 14 GSM35270 Spanish soil sample S12, replicate 1 1,200 University of British Columbia 2004-11-13 [Oligo Array] SARST microarray (GPL1705) genomic Bacteria unclassified source_name:Soil sample from Artxanda title:Spanish soil sample S12, replicate 1 description:Comparison of hexachlorocyclohexane (HCH) contaminated soils from Spain with a community-specific microarray. Location Artxanda Depth 8 alpha-HCH (ppm) 0.17 Total HCH (ppm) 0.4 Heterotrophic counts 4.01E+06 Fungal counts 6.41E+03 pH 7.6 Organic matter 31.8 15 GSM35269 Spanish soil sample S11, replicate 2 1,200 University of British Columbia 2004-11-13 [Oligo Array] SARST microarray (GPL1705) genomic Bacteria unclassified source_name:Soil sample from Artxanda title:Spanish soil sample S11, replicate 2 description:Comparison of hexachlorocyclohexane (HCH) contaminated soils from Spain with a community-specific microarray. Location Artxanda Depth 10 alpha-HCH (ppm) 0 Total HCH (ppm) 0.01 Heterotrophic counts 1.07E+07 Fungal counts 9.31E+03 pH 8.1 Organic matter 9.1 16 GSM35268 Spanish soil sample S11, replicate 1 1,200 University of British Columbia 2004-11-13 [Oligo Array] SARST microarray (GPL1705) genomic Bacteria unclassified source_name:Soil sample from Artxanda title:Spanish soil sample S11, replicate 1 description:Comparison of hexachlorocyclohexane (HCH) contaminated soils from Spain with a community-specific microarray. Location Artxanda Depth 10 alpha-HCH (ppm) 0 Total HCH (ppm) 0.01 Heterotrophic counts 1.07E+07 Fungal counts 9.31E+03 pH 8.1 Organic matter 9.1 17 GSM35267 Spanish soil sample S10, replicate 2 1,200 University of British Columbia 2004-11-13 [Oligo Array] SARST microarray (GPL1705) genomic Bacteria unclassified source_name:Soil sample from Artxanda title:Spanish soil sample S10, replicate 2 description:Comparison of hexachlorocyclohexane (HCH) contaminated soils from Spain with a community-specific microarray. Location Artxanda Depth 15 alpha-HCH (ppm) 0 Total HCH (ppm) 0.03 Heterotrophic counts 2.17E+06 Fungal counts 7.43E+03 pH 5.4 Organic matter 21.2 18 GSM35266 Spanish soil sample S10, replicate 1 1,200 University of British Columbia 2004-11-13 [Oligo Array] SARST microarray (GPL1705) genomic Bacteria unclassified source_name:Soil sample from Artxanda title:Spanish soil sample S10, replicate 1 description:Comparison of hexachlorocyclohexane (HCH) contaminated soils from Spain with a community-specific microarray. Location Artxanda Depth 15 alpha-HCH (ppm) 0 Total HCH (ppm) 0.03 Heterotrophic counts 2.17E+06 Fungal counts 7.43E+03 pH 5.4 Organic matter 21.2 19 GSM34056 Snout 39,309 University of Toronto 2004-10-28 [Oligo Array] Mouse XM microarray set (GPL1537) RNA Mus musculus unclassified source_name:Snout title:Snout description:Pool of RNA from Snout tissue 20 GSM33607 SF370 6-23B 7,344 University of Maryland, College Park 2004-10-27 [Oligo Array] M1, M3, M18 GAS Array (GPL1482) RNA Streptococcus pyogenes unclassified source_name:CsCl total RNA from M1 serotype GAS SF370 genomic DNA from M1 serotype GAS SF370 title:SF370 6-23B description:Total RNA was isolated by CsCl method, cDNA was labeled using CyScribe Post Lbeleing kit from Amersham. Genomic DNA was labeled using Nick Translation kit from Amersham. Labeled probes were purified with GFX columns and incorporation rates were determined using a nanodrop. Approximately equal amounts of cDNA/gDNA were denatured and hybridized to arrays at 50C overnight followed by subsequent washes. Arrays were scanned using GenePix software. Output data (F635 mean -B635, F532 mean -B532, flags) from gpr file were analyzed to remove spots that did not exceed 2SD above a background threshold. Remaining spots were normalized and ratios of cDNA to gDNA were calculated. 1   |   2   |   3   |   4   |   5      »      [8]