Gene Expression Omnibus (GEO) Overview

DataSet	:	Series(GSE) x Platform(GPL). A set of related gene expression data.
Sample	:	Biological materials.
platform	:	Methods or instruments used for the gene expression profilings.

All
(11,528)

SAGE NlaIII
(83)

SAGE RsaI
(1)

Other
(129)

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	Platform ID	Title	Number of the probes	Institute	Submission date	Manufacturer	Species	Platform class	Reasoning of the classification Keywords used for the classification are shown with bold font.
1	GPL6705	Illumina Arabidopsis thaliana SBS inflorescence (polyA RNA)	7,109,274	Delaware Biotechnology Institute	2008-04-08		Arabidopsis thaliana	Other	other, Illumina Arabidopsis thaliana SBS inflorescence (polyA RNA),
2	GPL7071	Small RNA SBS signatures indentified from maize using Illumina's SBS technnology	5,386,553	University of Delaware	2008-07-19		Zea mays	Other	other, Small RNA SBS signatures indentified from maize using Illumina's SBS technnology,
3	GPL6708	Illumina Arabidopsis thaliana SBS inflorescence (small RNA)	3,589,785	Delaware Biotechnology Institute	2008-04-08		Arabidopsis thaliana	Other	other, Illumina Arabidopsis thaliana SBS inflorescence (small RNA),
4	GPL4737	Zebrafish Paired End DiTags	663,674	Genome Institute Of Singapore	2007-01-09	not applicable	Danio rerio	Other	other, Zebrafish Paired End DiTags, Paired End DiTags (PET) derived from 5 Zebrafish libraries. Used a DNA tag sequencing and mapping strategy called gene identification signature (GIS) analysis, in which 5' and 3' signatures of full-length cDNAs are accurately extracted into paired-end ditags (PETs) that are concatenated for efficient sequencing and mapped to genome sequences to demarcate the transcription boundaries of every gene. GIS analysis is potentially 30-fold more efficient than standard cDNA sequencing approaches for transcriptome characterization. Mappings based on Genome Build: Zv6 (March 2006)
5	GPL6583	MPI_Chen_domestic_dog_Solexa_2007	438,950	MPI molecular genetics	2008-03-14		Canis lupus familiaris	Other	other, MPI_Chen_domestic_dog_Solexa_2007,
6	GPL6584	MPI_Chen_HeLa_Solexa_2007	361,478	MPI molecular genetics	2008-03-14		Homo sapiens	Other	other, MPI_Chen_HeLa_Solexa_2007,
7	GPL3886	Physcomitrella patens high-throughput small RNA sequencing	214,996	Pennsylvania State University	2006-06-19		Physcomitrella patens	Other	other, Physcomitrella patens high-throughput small RNA sequencing, Endogenous small RNAs from Physcomitrella patens were sequenced using pyrosequencing as described in Axtell et al. (2006) A two-hit trigger for siRNA biogenesis in plants. Cell 127: 565-577. UPDATED JULY 9, 2007 TO INCLUDE SEQUENCED RNAS THAT DO NOT HAVE AN EXACT MATCH IN THE GENOME
8	GPL5449	CSMA [DpnII: Mus musculus] signature list	103,515	Solexa	2007-06-28		Mus musculus	Other	other, CSMA [DpnII: Mus musculus] signature list, Contains annotation and mapping information for canonical signatures Unigene Mm.151 and mouse genome sequence (mm7) were used for the annotation
9	GPL4569	C. elegans small RNA sequences	89,917	Stanford University	2006-11-17		Caenorhabditis elegans	Other	other, C. elegans small RNA sequences, Small RNA sequences from wild type animals fed on sel-1 dsRNA producing bacteria.
10	GPL3862	piRNA sequences in mouse	65,535	Brandeis University	2006-06-09	Massachusetts General Hospital	Mus musculus	Other	other, piRNA sequences in mouse, Sequences were analyzed and annotated for matches to the mouse genome. See Supplemental Online Materials from Lau et al. Science. 2006 Jun 15; [Epub ahead of print] PMID: 16778019 for detailed protocol on data processing.
11	GPL3858	piRNA sequences in rat	61,293	Brandeis University	2006-06-08	Massachusetts General Hospital	Rattus norvegicus	Other	other, piRNA sequences in rat, Sequences were analyzed and annotated for matches to the rat genome. See Supplemental Online Materials from Lau et al. Science. 2006 Jun 15; [Epub ahead of print] PMID: 16778019 for detailed protocol on data processing.
12	GPL5955	MaPTOL for REST	49,833	The Scripps Research Institute	2007-10-02	Scripps Research Institute	Mus musculus	Other	other, MaPTOL for REST,
13	GPL5014	Sequenced small RNAs from the lycopod Selaginella moellendorffii	36,582	Pennsylvania State University	2007-03-20		Selaginella moellendorffii	Other	other, Sequenced small RNAs from the lycopod Selaginella moellendorffii, Pyrosequencing of small RNAs from the lycopod Selaginella moellendorffii.
14	GPL973	UMAS:MboI/FokI:Saccharomyces cerevisiae	32,097	Agilix Corporation	2004-02-04		Saccharomyces cerevisiae	Other	other, UMAS:MboI/FokI:Saccharomyces cerevisiae, This is a virtual platform for UMAS libraries generated for Saccharomyces cerevisiae using MboI/FokI as an anchor enzyme. Platform_anchor: MboI/FokI
15	GPL6461	2D-LC MS/MS Analyses of HLA Class I Peptides Isolated from B-cells Infected with Vaccinia Virus	23,797	Mayo Clinic	2008-02-05		Homo sapiens,Bos taurus,Vaccinia virus	Other	MS, 2D-LC MS/MS Analyses of HLA Class I Peptides Isolated from B-cells Infected with Vaccinia Virus, B-cell cultures were infected with live vaccinia virus (NYBOH strain). Cells were lysed, HLA/peptide complexes were enriched by immunoaffinity (W6/32 mAb), peptides were released with acid and separated from HLA proteins by 10 kDa ultrafilitration. HLA class I peptides were separated and identified by 2-dimensional liquid chromatography and tandem mass spectrometry to identify class I peptides derived from vaccinia proteins, that were being presented to the immune system.
16	GPL14689	Invitrogen ProtoArray v5.0 (full array layout)	23,232	Stanford	2011-10-07	Invitrogen	Homo sapiens	Other	spotted peptide or protein, Invitrogen ProtoArray v5.0 (full array layout),
17	GPL14921	ASU_random-sequence peptide microarray	23,196	Biodesign Institute	2011-11-22	Arizona State University	synthetic construct	Other	spotted peptide or protein, ASU_random-sequence peptide microarray, random-sequence peptide microarray
18	GPL10695	SMD Print_1478 yeast protoarray YA104704	19,200	Stanford University	2010-07-16	Stanford Functional Genomics Facility, Stanford School of Medicine	Saccharomyces cerevisiae	Other	spotted peptide or protein, SMD Print_1478 yeast protoarray YA104704,
19	GPL6454	ProtoArray Human Protein Microarray v3.0	19,200	Stanford University	2008-02-04	Invitrogen Inc.	Homo sapiens	Other	spotted peptide or protein, ProtoArray Human Protein Microarray v3.0,
20	GPL6889	Invitrogen ProtoArray v3 protein microarray lot HA10726	19,200	Case Western Reserve University	2008-05-21	Invitrogen	Homo sapiens	Other	spotted peptide or protein, Invitrogen ProtoArray v3 protein microarray lot HA10726, For further information use the microarray ID (barcode) RS00030883 at http://www.invitrogen.com/site/us/en/home/Products-and-Services/Applications/Protein-Expression-and-Analysis/Biomarker-Discovery/ProtoArray/ProtoArray-Lot-Specific-Information.html (or current lot-specific information link on website)

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