Gene Expression Omnibus (GEO) Overview Version´╝Ü2014-04-12Japanese page
An overview of the GEO entries broken down by the measurement platforms and the features of the measured samples.
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Data Unit : [ DataSet / Sample / Platform ] Show explanation>> <<Hide explanation
DataSet : Series(GSE) x Platform(GPL). A set of related gene expression data.
Sample : Biological materials.
platform : Methods or instruments used for the gene expression profilings.
The numbers shown in the tabs are the numbers of the data (series, samples or platforms) belonging to the groups.
  Human
(3,985)
  Primates
(80)
  Rodents
(1,907)
  Mammals
(359)
  Vertebrates
(450)
  Invertebrates
(1,139)
  Plants
(2,490)
  Bacteria
(1,901)
  Viruses
(90)
  Phages
(11)
  Unclassified
(542)
  All
(13,032)
 
  SAGE NlaIII
(83)
  SAGE RsaI
(1)
  SAGE Sau3A
(5)
  MPSS
(18)
  GeneChip
(809)
  Tiling Array
(1,310)
  cDNA Array
(2,770)
  Oligo Array
(5,679)
  Bead Array
(210)
  Protein Array
(1)
  Antibody
(28)
  RT-PCR
(209)
  HT-Seq
(1,710)
  Other
(187)
  All
(13,032)
 
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Platform ID Title Number of the probes Institute Submission date Manufacturer Species Platform class Reasoning of the classification
Keywords used for the classification are shown with bold font.
1 GPL17787 ZeptoMARK assay platform 158 University of Tuebingen 2013-10-17 Zeptosens (Witterswil, Switzerland) Mus musculus
Mus musculus
Other spotted peptide or protein, ZeptoMARK assay platform, protein or protein modifications
2 GPL4737 Zebrafish Paired End DiTags 663,674 Genome Institute Of Singapore 2007-01-09 not applicable Danio rerio
Danio rerio
Other other, Zebrafish Paired End DiTags, Paired End DiTags (PET) derived from 5 Zebrafish libraries. Used a DNA tag sequencing and mapping strategy called gene identification signature (GIS) analysis, in which 5' and 3' signatures of full-length cDNAs are accurately extracted into paired-end ditags (PETs) that are concatenated for efficient sequencing and mapped to genome sequences to demarcate the transcription boundaries of every gene. GIS analysis is potentially 30-fold more efficient than standard cDNA sequencing approaches for transcriptome characterization. Mappings based on Genome Build: Zv6 (March 2006)
3 GPL9445 Yeast Protoarray YA103104 gal file 12,288 Duke University 2009-10-14 Invitrogen Saccharomyces cerevisiae
Saccharomyces cerevisiae
Other spotted peptide or protein, Yeast Protoarray YA103104 gal file,
4 GPL9404 Yeast Protoarray 082004_YeastProtoArrayKSP 12,288 Duke University 2009-10-08 Invitrogen Saccharomyces cerevisiae
Saccharomyces cerevisiae
Other spotted peptide or protein, Yeast Protoarray 082004_YeastProtoArrayKSP,
5 GPL7497 Virtual Platform for Peptidome Submissions 0 2008-10-16 not applicable Mus musculus
Mus musculus
Other other, Virtual Platform for Peptidome Submissions, ESI-QUAD-TOF ESI-ION-TRAP ESI-FTICR-CID ESI-FTICR-ECD MALDI-QUAD-TOF MALDI-TOF-TOF MALDI-TOF-PSD ESI-4SECTOR ESI-QUAD FTMS-ECD ETD-TRAP MALDI-QUAD-TOF MALDI-QIT-TOF ETD+W TRAP-FTMS
6 GPL14638 Utz Lab Whole Protein Autoantigen Array V2.0 144 Stanford University 2011-09-29 Utz Laboratory, Stanford University Escherichia coli,Gallus gallus,Homo sapiens,Bos taurus,Oryctolagus cuniculus,Mus musculus
Escherichia coli,Gallus gallus,Homo sapiens,Bos taurus,Oryctolagus cuniculus,Mus musculus
Other spotted peptide or protein, Utz Lab Whole Protein Autoantigen Array V2.0,
7 GPL9059 Utz Lab Whole Protein Autoantigen Array V1.0 78 Stanford University 2009-08-19 Utz Laboratory, Stanford University Escherichia coli,Gallus gallus,Homo sapiens,Bos taurus,Oryctolagus cuniculus,Mus musculus
Escherichia coli,Gallus gallus,Homo sapiens,Bos taurus,Oryctolagus cuniculus,Mus musculus
Other spotted peptide or protein, Utz Lab Whole Protein Autoantigen Array V1.0,
8 GPL17752 Utz lab SLE antigen and serum factor microarray 1,350 Stanford University 2013-09-23 Laboratory of Paul J. Utz Gallus gallus,Homo sapiens,Bos taurus
Gallus gallus,Homo sapiens,Bos taurus
Other spotted peptide or protein, Utz lab SLE antigen and serum factor microarray,
9 GPL16497 Utz lab influenza peptide array 72 Stanford University 2013-01-11 Laboratory of Paul J. Utz Influenza B virus,H1N1 subtype,H3N2 subtype
Influenza B virus,H1N1 subtype,H3N2 subtype
Other spotted peptide or protein, Utz lab influenza peptide array, Influenza - Orthomyxovidiae, H1N1 (A/Brisbane/59/2007), H3N2 (A/Brisbane/10/2007), and B (B/Brisbane/60/2008)
10 GPL17754 Utz lab immunodeficiency antigen and serum factor microarray, number 2 282 Stanford University 2013-09-23 Laboratory of Paul J. Utz Gallus gallus,Homo sapiens,Bos taurus
Gallus gallus,Homo sapiens,Bos taurus
Other spotted peptide or protein, Utz lab immunodeficiency antigen and serum factor microarray, number 2,
11 GPL17753 Utz lab immunodeficiency antigen and serum factor microarray, number 1 282 Stanford University 2013-09-23 Laboratory of Paul J. Utz Gallus gallus,Homo sapiens,Bos taurus
Gallus gallus,Homo sapiens,Bos taurus
Other spotted peptide or protein, Utz lab immunodeficiency antigen and serum factor microarray, number 1,
12 GPL14945 Utz lab histone protein and peptide array 87 Stanford University 2011-12-01 Laboratory of Paul J. Utz Gallus gallus,Homo sapiens,Bos taurus
Gallus gallus,Homo sapiens,Bos taurus
Other spotted peptide or protein, Utz lab histone protein and peptide array,
13 GPL5338 University of Pennsylvania/Nathanson Lab_HomoSapiens_ChromosomeRegion_Virtual 5,795 University of Pennsylvania 2007-05-29 Weber Laboratory/School of Medicine/University of Pennsylvania Homo sapiens
Homo sapiens
Other other, University of Pennsylvania/Nathanson Lab_HomoSapiens_ChromosomeRegion_Virtual, This virtual platform comprises the chromosomal regions covered by the following three BAC arrays: GPL5108: HomoSapiens_5215 unique BACS_FGA011806 GPL5109: HomoSapiens_5217 unique BACS_FGA061005 GPL5110: HomoSapiens_4798 unique BACS_FGA72904 Nucleotide coordinates correspond to the hg18 assembly (NCBI Build 36.1)
14 GPL973 UMAS:MboI/FokI:Saccharomyces cerevisiae 32,097 Agilix Corporation 2004-02-04 Saccharomyces cerevisiae
Saccharomyces cerevisiae
Other other, UMAS:MboI/FokI:Saccharomyces cerevisiae, This is a virtual platform for UMAS libraries generated for Saccharomyces cerevisiae using MboI/FokI as an anchor enzyme. Platform_anchor: MboI/FokI
15 GPL16351 UCI Leptospira interrogans serovar Copenhageni Protein Microarray chip LI6 2,525 University of California Irvine 2012-12-04 UCI Protein Microarray Laboratory Leptospira interrogans serovar Copenhageni
Leptospira interrogans serovar Copenhageni
Other spotted peptide or protein, UCI Leptospira interrogans serovar Copenhageni Protein Microarray chip LI6,
16 GPL15319 Targeted array-based proteomics [RPPA-SKBR3] 3,030 German Cancer Research Center 2012-03-07 Division of Molecular Genome Analysis, B050, German Cancer Research Center Homo sapiens
Homo sapiens
Other spotted peptide or protein, Targeted array-based proteomics [RPPA-SKBR3], reverse phase protein array (RPPA/RPA), lysate array
17 GPL17612 Targeted array-based proteomics [RPPA-Shortterm-BT474] 3,060 German Cancer Research Center 2013-08-22 Division of Molecular Genome Analysis, B050, German Cancer Research Center Homo sapiens
Homo sapiens
Other spotted peptide or protein, Targeted array-based proteomics [RPPA-Shortterm-BT474], reverse phase protein array (RPPA/RPA), lysate array
18 GPL15318 Targeted array-based proteomics [RPPA-Longterm] 1,080 German Cancer Research Center 2012-03-07 Division of Molecular Genome Analysis, B050, German Cancer Research Center Homo sapiens
Homo sapiens
Other spotted peptide or protein, Targeted array-based proteomics [RPPA-Longterm], reverse phase protein array (RPPA/RPA), lysate array
19 GPL17613 Targeted array-based proteomics [RPPA-Longterm-BT474] 540 German Cancer Research Center 2013-08-22 Division of Molecular Genome Analysis, B050, German Cancer Research Center Homo sapiens
Homo sapiens
Other spotted peptide or protein, Targeted array-based proteomics [RPPA-Longterm-BT474], reverse phase protein array (RPPA/RPA), lysate array
20 GPL15317 Targeted array-based proteomics [RPPA-HCC1954] 3,030 German Cancer Research Center 2012-03-07 Division of Molecular Genome Analysis, B050, German Cancer Research Center Homo sapiens
Homo sapiens
Other spotted peptide or protein, Targeted array-based proteomics [RPPA-HCC1954], reverse phase protein array (RPPA/RPA), lysate array
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