Gene Expression Omnibus (GEO) Overview

DataSet	:	Series(GSE) x Platform(GPL). A set of related gene expression data.
Sample	:	Biological materials.
platform	:	Methods or instruments used for the gene expression profilings.

All
(11,831)

SAGE NlaIII
(83)

SAGE RsaI
(1)

Other
(142)

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	Platform ID	Title	Number of the probes	Institute	Submission date	Manufacturer	Species	Platform class	Reasoning of the classification Keywords used for the classification are shown with bold font.
1	GPL2543	18O Isotopic Labeling of Plasma Membrane	658	University of Wisconsin	2005-06-14		Arabidopsis thaliana	Other	MS, 18O Isotopic Labeling of Plasma Membrane, An isotopic labeling experiment designed to identifiy plasma membrane proteins. Fractions from a two-phase partitioning experiment are labeled using natural abundance or 18O enriched water to compare the PM enriched fraction to the PM-depleted microsomal fraction.
2	GPL6461	2D-LC MS/MS Analyses of HLA Class I Peptides Isolated from B-cells Infected with Vaccinia Virus	23,797	Mayo Clinic	2008-02-05		Homo sapiens,Bos taurus,Vaccinia virus	Other	MS, 2D-LC MS/MS Analyses of HLA Class I Peptides Isolated from B-cells Infected with Vaccinia Virus, B-cell cultures were infected with live vaccinia virus (NYBOH strain). Cells were lysed, HLA/peptide complexes were enriched by immunoaffinity (W6/32 mAb), peptides were released with acid and separated from HLA proteins by 10 kDa ultrafilitration. HLA class I peptides were separated and identified by 2-dimensional liquid chromatography and tandem mass spectrometry to identify class I peptides derived from vaccinia proteins, that were being presented to the immune system.
3	GPL11652	AbC_ELTE_human_432_v1	432	EÃƒÂ¶tvÃƒÂ¶s LorÃƒÂ¡nd University	2011-01-26	Eotvos Lorand University, Budapest, Hungary	Homo sapiens,Sus scrofa,Bos taurus,Capra hircus,Oryctolagus cuniculus	Other	spotted peptide or protein, AbC_ELTE_human_432_v1,
4	GPL9968	Allergochip for asthma diagnosis	103	University of Perugia	2010-01-24	Crisanti's Lab-Imperial College	Dermatophagoides pteronyssinus	Other	spotted peptide or protein, Allergochip for asthma diagnosis,
5	GPL15100	Antigen Discovery Vaccinia virus (strain WR) proteome microarray [batch VC11]	200	University of California Irvine	2012-01-09	Antigen Discovery Inc	Vaccinia virus WR	Other	spotted peptide or protein, Antigen Discovery Vaccinia virus (strain WR) proteome microarray [batch VC11], VC11 custom-commercial vaccinia (strain WR) proteome microarrays produced at Antigen Discovery Inc, Irvine CA. The arrays are produced by in vitro transcription/translation (IVTT) reactions using plasmids encoding individual vaccinia ORFs as templates, and reactions printed onto nitrocellulose-coated slides. Multiple spots consisting of reactions lacking plasmid templates ('no DNA' controls) are present on each array and used for data normalization. The construction and QC of the arrays used in this study (batch VC11) has been described previoulsy (Hermanson et al 2011).
6	GPL14921	ASU_random-sequence peptide microarray	23,196	Biodesign Institute	2011-11-22	Arizona State University	synthetic construct	Other	spotted peptide or protein, ASU_random-sequence peptide microarray, random-sequence peptide microarray
7	GPL15009	Austrain Institution of Technology Protein Array 642	642	Austrian Institution of Technology	2011-12-14	Austrian Institute of Technology	Homo sapiens	Other	spotted peptide or protein, Austrain Institution of Technology Protein Array 642,
8	GPL14556	Bio-Plex Pro Human Cytokine and Chemokine Assays_Stanford_Robinson Lab_v1.0	36	Stanford University	2011-09-09	Bio-Rad Laboratories, Inc.	Homo sapiens	Other	spotted peptide or protein, Bio-Plex Pro Human Cytokine and Chemokine Assays_Stanford_Robinson Lab_v1.0, Bead-based multiplex immunoassay Capture and secondary anti-cytokine antibodies for sandwich immunoassay were commercially obtained and proprietary.
9	GPL17262	Bos taurus Species Specific Phosphorylation Array	300	VIDO-Intervac	2013-06-07	JPT Peptide Technologies	Bos taurus	Other	spotted peptide or protein, Bos taurus Species Specific Phosphorylation Array,
10	GPL4569	C. elegans small RNA sequences	89,917	Stanford University	2006-11-17		Caenorhabditis elegans	Other	other, C. elegans small RNA sequences, Small RNA sequences from wild type animals fed on sel-1 dsRNA producing bacteria.
11	GPL5449	CSMA [DpnII: Mus musculus] signature list	103,515	Solexa	2007-06-28		Mus musculus	Other	other, CSMA [DpnII: Mus musculus] signature list, Contains annotation and mapping information for canonical signatures Unigene Mm.151 and mouse genome sequence (mm7) were used for the annotation
12	GPL5734	Dictyostelium discoideum small RNA sequences	2,673	Uppsala University	2007-08-13		Dictyostelium discoideum	Other	other, Dictyostelium discoideum small RNA sequences,
13	GPL9191	DUMRU Mouse 12K v1.0	6,963	Deakin University	2009-09-14	Deakin University, Metabolic Research Unit	Mus musculus	Other	other, DUMRU Mouse 12K v1.0, ONLY CLONES OF INTEREST HAVE BEEN SEQUENCED AND IDENTIFIED
14	GPL1721	Focused Phage Epitope Microarray	180	University of Michigan	2004-11-27		Homo sapiens	Other	other, Focused Phage Epitope Microarray, 180 phage clones were spotted on the membrane coated slide to make small focused epitope array. Each spot on the chip represents a different phage clone.
15	GPL6115	Global proteomic characterization of photosystem II complexes from Synechocystis sp. PCC 6803	218	Washington University in Saint Louis	2007-11-09		Synechocystis sp. PCC 6803	Other	MS, Global proteomic characterization of photosystem II complexes from Synechocystis sp. PCC 6803, Proteins identified in photosystem II complexes from Synechocystis sp. PCC 6803
16	GPL14644	Human Epigenome Microarray Platform V1.0	160	Stanford University	2011-09-30	Gozani Laboratory, Stanford University	Homo sapiens	Other	spotted peptide or protein, Human Epigenome Microarray Platform V1.0,
17	GPL6931	Human H1299 cells p73 ChIP-seq	4,224	Vanderbilt University Medical Center	2008-06-04	Genpathway, Inc., San Diego, CA.	Homo sapiens	Other	other, Human H1299 cells p73 ChIP-seq, Genpathway FactorPath Discovery Assay - H1299 cells
18	GPL9446	Human protoarray KSP gal file HA20034	12,288	Duke University	2009-10-14	Invitrogen	Homo sapiens	Other	spotted peptide or protein, Human protoarray KSP gal file HA20034,
19	GPL16889	IBMT Campylobacter jejuni alanine scan	204	Fraunhofer Institute for Biomedical Engineering	2013-03-27	JPT Peptides Technology	unidentified	Other	spotted peptide or protein, IBMT Campylobacter jejuni alanine scan, Spotted peptides. Campylobacter jejuni NCTC 11168 cj0669 protein.
20	GPL17115	IBMT Campylobacter jejuni alanine scan [2]	676	Fraunhofer Institute for Biomedical Engineering	2013-05-06	JPT Peptides Technology	unidentified	Other	spotted peptide or protein, IBMT Campylobacter jejuni alanine scan [2], Campylobacter jejuni NCTC 11168 cj0669 protein

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