Gene Expression Omnibus (GEO) Overview

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DataSet	:	Series(GSE) x Platform(GPL). A set of related gene expression data.
Sample	:	Biological materials.
platform	:	Methods or instruments used for the gene expression profilings.

All
(898,944)

SAGE NlaIII
(1,683)

Tiling Array
(21,846)

cDNA Array
(103,476)

Oligo Array
(239,584)

Other
(6,909)

brain
(0)

connective
(0)

reproductive
(0)

muscular
(0)

digestive
(0)

liver
(0)

lung
(0)

urinary
(0)

endo/exo-crine
(0)

embryo
(0)

adult aerial structure
(0)

young aerial structure
(0)

root
(0)

meristem/growing tissue
(0)

flower/sexual organ
(0)

seed/fruit/grain
(0)

pooled
(0)

unclassified
(606)

all
(6,909)

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	Sample ID	Title	Number of Data	Institute	Submission date	Platform	Sample type	Species	Organ class	Reasoning of the classification Keywords used for the classification are shown with bold font.
1	GSM306487	Small RNA SBS signatures: wild-type	3,355,880	University of Delaware	2008-07-19	[Other] Small RNA SBS signatures indentified from maize using Illumina's SBS technnology (GPL7071)	MPSS	Zea mays	other flower/sexual organ	This library was derived from maize variety K55. Immature ears were harvested from plants grown outdoors in Tuscon, AZ. The material was harvested from plants 68 days after germination, with the floral tissue including young tassels 2-3 cm long. Total RNA was isolated using a standard TRIZOL-based method and the small RNA libraries were generated as described by Lu et al. (Methods 2007, 43:110), followed by sequencing with Illumina's SBS method. The adapter sequences were removed, and the abundance of each distinct small RNA was determined.
2	GSM306488	Small RNA SBS signatures: mutant mop1-1	2,235,562	University of Delaware	2008-07-19	[Other] Small RNA SBS signatures indentified from maize using Illumina's SBS technnology (GPL7071)	MPSS	Zea mays	other flower/sexual organ	This library was derived from maize variety K55. Immature ears were harvested from plants grown outdoors in Tuscon, AZ. The material was harvested from plants 68 days after germination, with the floral tissue including young tassels 2-3 cm long. Total RNA was isolated using a standard TRIZOL-based method and the small RNA libraries were generated as described by Lu et al. (Methods 2007, 43:110), followed by sequencing with Illumina's SBS method. The adapter sequences were removed, and the abundance of each distinct small RNA was determined.
3	GSM273725	MPI_Chen_domestic_dog_Solexa_2007	438,950	MPI molecular genetics	2008-03-14	[Other] MPI_Chen_domestic_dog_Solexa_2007 (GPL6583)	MPSS	Canis lupus familiaris	unclassified	source_name:domestic dog title:MPI_Chen_domestic_dog_Solexa_2007 description:small RNAs
4	GSM274171	MPI_Chen_HeLa_Solexa_2007	361,478	MPI molecular genetics	2008-03-14	[Other] MPI_Chen_HeLa_Solexa_2007 (GPL6584)	MPSS	Homo sapiens	skin	HeLa cells
5	GSM531766	Stage_II_Primordia	354,282	Utrecht University	2010-04-08	[Other] SAGE:16:DpnII:Schizophyllum commune (GPL10299)	SAGE	Schizophyllum commune	unclassified	source_name:Stage II Primordia title:Stage_II_Primordia description:Anchoring enzyme: DpnII
6	GSM531764	Monokaryon_vegetative_mycelium	318,644	Utrecht University	2010-04-08	[Other] SAGE:16:DpnII:Schizophyllum commune (GPL10299)	SAGE	Schizophyllum commune	pooled	Monokaryon, vegetative mycelium
7	GSM531765	Stage_I_Aggregates	293,178	Utrecht University	2010-04-08	[Other] SAGE:16:DpnII:Schizophyllum commune (GPL10299)	SAGE	Schizophyllum commune	unclassified	source_name:Stage I Aggregates title:Stage_I_Aggregates description:Anchoring enzyme: DpnII
8	GSM531767	Mature mushrooms	267,911	Utrecht University	2010-04-08	[Other] SAGE:16:DpnII:Schizophyllum commune (GPL10299)	SAGE	Schizophyllum commune	unclassified	source_name:Mushrooms title:Mature mushrooms description:Anchoring enzyme: DpnII
9	GSM154489	PET counts from adult brain	228,263	Genome Institute Of Singapore	2007-01-09	[Other] Zebrafish Paired End DiTags (GPL4737)	RNA	Danio rerio	cerebrum	Adult Brain
10	GSM115095	Protonemata_1	214,996	Pennsylvania State University	2006-06-19	[Other] Physcomitrella patens high-throughput small RNA sequencing (GPL3886)	RNA	Physcomitrella patens	pooled	7 day protonemata
11	GSM115096	Protonemata-YoungGametophores_1	214,996	Pennsylvania State University	2006-06-19	[Other] Physcomitrella patens high-throughput small RNA sequencing (GPL3886)	RNA	Physcomitrella patens	pooled	Protonemata-YoungGametophores_1
12	GSM115097	GamteophoresSporophytes_1	214,996	Pennsylvania State University	2006-06-19	[Other] Physcomitrella patens high-throughput small RNA sequencing (GPL3886)	RNA	Physcomitrella patens	pooled	~60 day Gametophores and Sporophytes
13	GSM154488	PET counts from embryos	155,706	Genome Institute Of Singapore	2007-01-09	[Other] Zebrafish Paired End DiTags (GPL4737)	RNA	Danio rerio	embryo	Embryos
14	GSM154487	PET counts from adult gut/internal organs	145,522	Genome Institute Of Singapore	2007-01-09	[Other] Zebrafish Paired End DiTags (GPL4737)	RNA	Danio rerio	intestine	Adult Gut/Internal Organs
15	GSM154491	PET counts from adult ovary	130,744	Genome Institute Of Singapore	2007-01-09	[Other] Zebrafish Paired End DiTags (GPL4737)	RNA	Danio rerio	ovary	Adult Ovary
16	GSM146128	Caenorhabditis elegans small RNA sequences from wild type animals fed on sel-1 dsRNA producing bacteria	89,917	Stanford University	2006-11-17	[Other] C. elegans small RNA sequences (GPL4569)	other	Caenorhabditis elegans	unclassified	source_name:sel-1 RNAi (feeding) title:Caenorhabditis elegans small RNA sequences from wild type animals fed on sel-1 dsRNA producing bacteria description:Raw data files (e.g. on Science Magazine website) may be preferred source for analysis.
17	GSM113695	Abundance of piRNAs in mouse testes	65,535	Brandeis University	2006-06-09	[Other] piRNA sequences in mouse (GPL3862)	RNA	Mus musculus	testis	Q column eluate fractions of mouse testes extract
18	GSM154490	PET counts from whole adult fish	62,109	Genome Institute Of Singapore	2007-01-09	[Other] Zebrafish Paired End DiTags (GPL4737)	RNA	Danio rerio	unclassified	source_name:Whole Adult Fish title:PET counts from whole adult fish description:Paired End DiTags (PET) library, SDR001_177373U_29082006_nr2_v1.
19	GSM113418	Abundance of piRNAs in rat testes	61,293	Brandeis University	2006-06-08	[Other] piRNA sequences in rat (GPL3858)	RNA	Rattus norvegicus	testis	Q column eluate fractions from rat testes extract
20	GSM206374	Spinal cord entire, Female (MoSC.FeEn)	52,200	Solexa	2007-06-28	[Other] CSMA [DpnII: Mus musculus] signature list (GPL5449)	MPSS	Mus musculus	spine	Spinal cord entire, Female (MoSC.FeEn)

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