Gene Expression Omnibus (GEO) Overview Version:2014-04-12Japanese page
An overview of the GEO entries broken down by the measurement platforms and the features of the measured samples.
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Data Unit : [ DataSet / Sample / Platform ] Show explanation>> <<Hide explanation
DataSet : Series(GSE) x Platform(GPL). A set of related gene expression data.
Sample : Biological materials.
platform : Methods or instruments used for the gene expression profilings.
The numbers shown in the tabs are the numbers of the data (series, samples or platforms) belonging to the groups.
  Human
(615,734)
  Primates
(5,814)
  Rodents
(225,055)
  Mammals
(20,968)
  Vertebrates
(22,581)
  Invertebrates
(46,584)
  Plants
(107,706)
  Bacteria
(45,091)
  Viruses
(1,432)
  Phages
(112)
  Unclassified
(6,986)
  All
(1,101,311)
 
  SAGE NlaIII
(1,697)
  SAGE RsaI
(3)
  SAGE Sau3A
(54)
  MPSS
(507)
  GeneChip
(441,758)
  Tiling Array
(24,730)
  cDNA Array
(109,124)
  Oligo Array
(288,250)
  Bead Array
(148,432)
  Protein Array
(5)
  Antibody
(1,287)
  RT-PCR
(6,509)
  HT-Seq
(64,850)
  Other
(13,899)
  All
(1,101,311)
 
  brain
(433)
  blood
(6,731)
  connective
(68)
  reproductive
(132)
  muscular
(12)
  digestive
(193)
  liver
(215)
  lung
(164)
  urinary
(2,481)
  endo/exo-crine
(851)
  embryo
(7)
  adult aerial structure
(0)
  young aerial structure
(0)
  root
(0)
  meristem/growing tissue
(0)
  flower/sexual organ
(2)
  seed/fruit/grain
(2)
  pooled
(95)
  unclassified
(2,513)
  all
(13,899)
 
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Sample ID Title Number of Data Institute Submission date Platform Sample type Species Organ class Reasoning of the classification
Keywords used for the classification are shown with bold font.
1 GSM306487 Small RNA SBS signatures: wild-type 3,355,880 University of Delaware 2008-07-19 [Other] Small RNA SBS signatures indentified from maize using Illumina's SBS technnology (GPL7071) MPSS Zea mays
Zea mays
other flower/sexual organ This library was derived from maize variety K55. Immature ears were harvested from plants grown outdoors in Tuscon, AZ. The material was harvested from plants 68 days after germination, with the floral tissue including young tassels 2-3 cm long. Total RNA was isolated using a standard TRIZOL-based method and the small RNA libraries were generated as described by Lu et al. (Methods 2007, 43:110), followed by sequencing with Illumina's SBS method. The adapter sequences were removed, and the abundance of each distinct small RNA was determined.
2 GSM306488 Small RNA SBS signatures: mutant mop1-1 2,235,562 University of Delaware 2008-07-19 [Other] Small RNA SBS signatures indentified from maize using Illumina's SBS technnology (GPL7071) MPSS Zea mays
Zea mays
other flower/sexual organ This library was derived from maize variety K55. Immature ears were harvested from plants grown outdoors in Tuscon, AZ. The material was harvested from plants 68 days after germination, with the floral tissue including young tassels 2-3 cm long. Total RNA was isolated using a standard TRIZOL-based method and the small RNA libraries were generated as described by Lu et al. (Methods 2007, 43:110), followed by sequencing with Illumina's SBS method. The adapter sequences were removed, and the abundance of each distinct small RNA was determined.
3 GSM1170854 Negative Control 1 23,232 Stanford University 2013-06-20 [Other] Invitrogen ProtoArray v5.0 (full array layout) (GPL14689) other unidentified
unidentified
unclassified source_name:none title:Negative Control 1 description:used to eliminate false signals
4 GSM1170855 Negative Control 2 23,232 Stanford University 2013-06-20 [Other] Invitrogen ProtoArray v5.0 (full array layout) (GPL14689) other unidentified
unidentified
unclassified source_name:none title:Negative Control 2 description:used to eliminate false signals
5 GSM1171488 Negative Control 352 Stanford University 2013-06-20 [Other] ProtoArray Custom Service (GPL17321) other unidentified
unidentified
unclassified source_name:None title:Negative Control description:352 Spots used for computation
6 GSM371854 No Antibody (Negative Control) 69 UC San Diego School of Medicine 2009-02-17 [Other] Mus musculus spotted antigen array (GPL8165) other unidentified
unidentified
unclassified source_name:control title:No Antibody (Negative Control) description:No antibody hybridized to slide; Buffer only
7 GSM373529 None 32 UC San Diego School of Medicine 2009-02-23 [Other] Mouse Human T15 Apoptotic Cell protein array (GPL8204) other unidentified
unidentified
unclassified source_name:None title:None description:No Antibody (Negative Control)
8 GSM373867 Blank (dendritic cell study) 31 UC San Diego School of Medicine 2009-02-24 [Other] Mouse Human T15 Apoptotic Cell protein array (GPL8204) other unidentified
unidentified
lymphnode Blank (dendritic cell study)
9 GSM266680 instrument_blanks 0 Mayo Clinic 2008-02-15 [Other] 2D-LC MS/MS Analyses of HLA Class I Peptides Isolated from B-cells Infected with Vaccinia Virus (GPL6461) protein unidentified
unidentified
unclassified source_name:instrument_blanks title:instrument_blanks description:Since the analyses are a series of SCX fractions from the same peptide preparations, the blanks serve to demonstrate the amount of carryover, but have essentially no effect on conclusions regarding the results, since subsequent analyses are of different fractions from the same sample.
10 GSM201208 SARD Profile of Soil Sample Pol-NE 3,127 Taxon Biosciences, Inc. 2007-06-13 [Other] Serial Analysis of Ribosomal DNA (GPL5384) genomic uncultured bacterium
uncultured bacterium
unclassified source_name:soil sample title:SARD Profile of Soil Sample Pol-NE description:Agricultural soil sample SARD tags.
11 GSM201211 SARD Profile of Soil Sample Pol-W 3,127 Taxon Biosciences, Inc. 2007-06-13 [Other] Serial Analysis of Ribosomal DNA (GPL5384) genomic uncultured bacterium
uncultured bacterium
unclassified source_name:soil sample title:SARD Profile of Soil Sample Pol-W description:Agricultural soil sample SARD tags.
12 GSM201212 SARD Profile of Soil Sample WP43 3,127 Taxon Biosciences, Inc. 2007-06-13 [Other] Serial Analysis of Ribosomal DNA (GPL5384) genomic uncultured bacterium
uncultured bacterium
unclassified source_name:soil sample title:SARD Profile of Soil Sample WP43 description:Agricultural soil sample SARD tags.
13 GSM201213 SARD Profile of Soil Sample WP45 3,127 Taxon Biosciences, Inc. 2007-06-13 [Other] Serial Analysis of Ribosomal DNA (GPL5384) genomic uncultured bacterium
uncultured bacterium
unclassified source_name:soil sample title:SARD Profile of Soil Sample WP45 description:Agricultural soil sample SARD tags.
14 GSM820919 S-GlcNAc modified CK2α with CK2β_Rep1 17,894 Johns Hopkins University School of Medicine 2011-10-21 [Other] JHUHIT Human 17K v2009 (GPL14771) protein synthetic construct
synthetic construct
unclassified source_name:semisynthetic S-GlcNAc-Ser347 CK2α protein with recombinant CK2β title:S-GlcNAc modified CK2α with CK2β_Rep1 description:There were no cells, organisms, or extracts used in this study. Semisynthetic and recombinant protein samples were used to catalyze phosphorylation of the proteins spotted on the microarray. 20 nM CK2α + 24 nM CK2β
15 GSM820920 S-GlcNAc modified CK2α with CK2β_Rep2 17,894 Johns Hopkins University School of Medicine 2011-10-21 [Other] JHUHIT Human 17K v2009 (GPL14771) protein synthetic construct
synthetic construct
unclassified source_name:semisynthetic S-GlcNAc-Ser347 CK2α protein with recombinant CK2β title:S-GlcNAc modified CK2α with CK2β_Rep2 description:There were no cells, organisms, or extracts used in this study. Semisynthetic and recombinant protein samples were used to catalyze phosphorylation of the proteins spotted on the microarray. 20 nM CK2α + 24 nM CK2β
16 GSM820921 Pfa modified CK2α with CK2β_Rep1 17,894 Johns Hopkins University School of Medicine 2011-10-21 [Other] JHUHIT Human 17K v2009 (GPL14771) protein synthetic construct
synthetic construct
unclassified source_name:semisynthetic Pfa344 CK2α protein with recombinant CK2β title:Pfa modified CK2α with CK2β_Rep1 description:There were no cells, organisms, or extracts used in this study. Semisynthetic and recombinant protein samples were used to catalyze phosphorylation of the proteins spotted on the microarray. 20 nM CK2α + 24 nM CK2β
17 GSM820922 Pfa modified CK2α with CK2β_Rep2 17,894 Johns Hopkins University School of Medicine 2011-10-21 [Other] JHUHIT Human 17K v2009 (GPL14771) protein synthetic construct
synthetic construct
unclassified source_name:semisynthetic Pfa344 CK2α protein with recombinant CK2β title:Pfa modified CK2α with CK2β_Rep2 description:There were no cells, organisms, or extracts used in this study. Semisynthetic and recombinant protein samples were used to catalyze phosphorylation of the proteins spotted on the microarray. 20 nM CK2α + 24 nM CK2β
18 GSM820923 unmodified CK2α with CK2β_Rep1 17,894 Johns Hopkins University School of Medicine 2011-10-21 [Other] JHUHIT Human 17K v2009 (GPL14771) protein synthetic construct
synthetic construct
unclassified source_name:semisynthetic unmodified CK2α protein with recombinant CK2β title:unmodified CK2α with CK2β_Rep1 description:There were no cells, organisms, or extracts used in this study. Semisynthetic and recombinant protein samples were used to catalyze phosphorylation of the proteins spotted on the microarray. 20 nM CK2α + 24 nM CK2β
19 GSM820924 unmodified CK2α with CK2β_Rep2 17,894 Johns Hopkins University School of Medicine 2011-10-21 [Other] JHUHIT Human 17K v2009 (GPL14771) protein synthetic construct
synthetic construct
unclassified source_name:semisynthetic unmodified CK2α protein with recombinant CK2β title:unmodified CK2α with CK2β_Rep2 description:There were no cells, organisms, or extracts used in this study. Semisynthetic and recombinant protein samples were used to catalyze phosphorylation of the proteins spotted on the microarray. 20 nM CK2α + 24 nM CK2β
20 GSM820925 S-GlcNAc modified CK2α alone_Rep1 17,894 Johns Hopkins University School of Medicine 2011-10-21 [Other] JHUHIT Human 17K v2009 (GPL14771) protein synthetic construct
synthetic construct
unclassified source_name:semisynthetic S-GlcNAc-Ser347 CK2α protein title:S-GlcNAc modified CK2α alone_Rep1 description:There were no cells, organisms, or extracts used in this study. Semisynthetic and recombinant protein samples were used to catalyze phosphorylation of the proteins spotted on the microarray. 20 nM CK2α
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